RNA–Protein interactions for RNA: ENST00000482878.5

CCDC78-213, Transcript of coiled-coil domain containing 78, humanhuman

TSL 2

Gene CCDC78, Length 3,458 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-213ENST00000482878 NISCHQ9Y2I1 1504 aa24.92■■□□□ 1.58
CCDC78-213ENST00000482878 SHROOM4Q9ULL8 1493 aa21.51■■□□□ 1.03
CCDC78-213ENST00000482878 DCAF8L2P0C7V8 631 aa21.51■■□□□ 1.03
CCDC78-213ENST00000482878 SUPT5HO00267 1087 aaKnown RBP21.19■□□□□ 0.98
CCDC78-213ENST00000482878 ZCCHC6Q5VYS8 1495 aaKnown RBP21.12■□□□□ 0.97
CCDC78-213ENST00000482878 CCDC180Q9P1Z9 1646 aa20.97■□□□□ 0.95
CCDC78-213ENST00000482878 CHIC1Q5VXU3 224 aa20.69■□□□□ 0.9
CCDC78-213ENST00000482878 MYO15BQ96JP2 1530 aa20.67■□□□□ 0.9
CCDC78-213ENST00000482878 HRCP23327 699 aa20.58■□□□□ 0.89
CCDC78-213ENST00000482878 PELP1Q8IZL8 1130 aaKnown RBP20.39■□□□□ 0.85
CCDC78-213ENST00000482878 DCAF1Q9Y4B6 1507 aa20.39■□□□□ 0.85
CCDC78-213ENST00000482878 PPARGC1BQ86YN6 1023 aaKnown RBP20.31■□□□□ 0.84
CCDC78-213ENST00000482878 PCGF6Q9BYE7 350 aa20.29■□□□□ 0.84
CCDC78-213ENST00000482878 LOC105371045A0A1W2PR82 267 aa20.13■□□□□ 0.81
CCDC78-213ENST00000482878 ABCC9O60706 1549 aa19.94■□□□□ 0.78
CCDC78-213ENST00000482878 EHMT2Q96KQ7 1210 aa19.93■□□□□ 0.78
CCDC78-213ENST00000482878 RSF1Q96T23 1441 aaPredicted RBP19.84■□□□□ 0.77
CCDC78-213ENST00000482878 SCRIBQ14160 1630 aa19.81■□□□□ 0.76
CCDC78-213ENST00000482878 TRIM26Q12899 539 aaPredicted RBP19.81■□□□□ 0.76
CCDC78-213ENST00000482878 SCAF1Q9H7N4 1312 aaKnown RBP19.69■□□□□ 0.74
CCDC78-213ENST00000482878 MYT1Q01538 1121 aa19.69■□□□□ 0.74
CCDC78-213ENST00000482878 TRIM41Q8WV44 630 aa19.69■□□□□ 0.74
CCDC78-213ENST00000482878 RB1CC1Q8TDY2 1594 aa19.64■□□□□ 0.73
CCDC78-213ENST00000482878 FAM9AQ8IZU1 332 aaPredicted RBP19.63■□□□□ 0.73
CCDC78-213ENST00000482878 CECR2Q9BXF3 1484 aa19.49■□□□□ 0.71
CCDC78-213ENST00000482878 ZEB1P37275 1124 aaPredicted RBP19.42■□□□□ 0.7
CCDC78-213ENST00000482878 MROH2BQ7Z745 1585 aa19.41■□□□□ 0.7
CCDC78-213ENST00000482878 NACADO15069 1562 aa19.39■□□□□ 0.69
CCDC78-213ENST00000482878 WIZO95785 1651 aa19.29■□□□□ 0.68
CCDC78-213ENST00000482878 BAZ1AQ9NRL2 1556 aaPredicted RBP19.15■□□□□ 0.66
CCDC78-213ENST00000482878 TTBK1Q5TCY1 1321 aaPredicted RBP19.13■□□□□ 0.65
CCDC78-213ENST00000482878 PABPN1Q86U42 306 aaKnown RBP eCLIP19.13■□□□□ 0.65
CCDC78-213ENST00000482878 ACIN1Q9UKV3 1341 aaKnown RBP19.13■□□□□ 0.65
CCDC78-213ENST00000482878 EIF4G1Q04637 1599 aaKnown RBP19.11■□□□□ 0.65
CCDC78-213ENST00000482878 GTF3C3Q9Y5Q9 886 aa19.09■□□□□ 0.65
CCDC78-213ENST00000482878 NEUROD1Q13562 356 aa19.08■□□□□ 0.65
CCDC78-213ENST00000482878 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.02■□□□□ 0.64
CCDC78-213ENST00000482878 CENPBP07199 599 aaPredicted RBP18.98■□□□□ 0.63
CCDC78-213ENST00000482878 ABCC8Q09428 1581 aa18.98■□□□□ 0.63
CCDC78-213ENST00000482878 CCDC88BA6NC98 1476 aa18.97■□□□□ 0.63
CCDC78-213ENST00000482878 TOP2AP11388 1531 aaKnown RBP18.97■□□□□ 0.63
CCDC78-213ENST00000482878 CCER1Q8TC90 406 aaPredicted RBP18.95■□□□□ 0.62
CCDC78-213ENST00000482878 SMARCA4P51532 1647 aa18.91■□□□□ 0.62
CCDC78-213ENST00000482878 SMARCA2P51531 1590 aa18.89■□□□□ 0.61
CCDC78-213ENST00000482878 RANGAP1P46060 587 aaPredicted RBP18.88■□□□□ 0.61
CCDC78-213ENST00000482878 SOGA1O94964 1423 aa18.88■□□□□ 0.61
CCDC78-213ENST00000482878 WRNQ14191 1432 aaPredicted RBP eCLIP18.87■□□□□ 0.61
CCDC78-213ENST00000482878 CEP162Q5TB80 1403 aa18.86■□□□□ 0.61
CCDC78-213ENST00000482878 TNIKQ9UKE5 1360 aa18.8■□□□□ 0.6
CCDC78-213ENST00000482878 RUSC2Q8N2Y8 1516 aa18.77■□□□□ 0.6
CCDC78-213ENST00000482878 CSRNP3Q8WYN3 585 aa18.77■□□□□ 0.6
CCDC78-213ENST00000482878 UBTFP17480 764 aaKnown RBP18.73■□□□□ 0.59
CCDC78-213ENST00000482878 UNC13AQ9UPW8 1703 aa18.72■□□□□ 0.59
CCDC78-213ENST00000482878 EEA1Q15075 1411 aa18.72■□□□□ 0.59
CCDC78-213ENST00000482878 DIEXFQ68CQ4 756 aaKnown RBP18.7■□□□□ 0.58
CCDC78-213ENST00000482878 YTHDC1Q96MU7 727 aaKnown RBP18.67■□□□□ 0.58
CCDC78-213ENST00000482878 GOLGA3Q08378 1498 aa18.63■□□□□ 0.57
CCDC78-213ENST00000482878 BICRAQ9NZM4 1560 aa18.56■□□□□ 0.56
CCDC78-213ENST00000482878 PEG3Q9GZU2 1588 aa18.51■□□□□ 0.55
CCDC78-213ENST00000482878 SYNJ1O43426 1573 aa18.51■□□□□ 0.55
CCDC78-213ENST00000482878 CEP164Q9UPV0 1460 aa18.5■□□□□ 0.55
CCDC78-213ENST00000482878 ZNF316A6NFI3 1004 aaPredicted RBP18.49■□□□□ 0.55
CCDC78-213ENST00000482878 HNRNPUL2Q1KMD3 747 aaKnown RBP18.47■□□□□ 0.55
CCDC78-213ENST00000482878 BCL11AQ9H165 835 aa18.47■□□□□ 0.55
CCDC78-213ENST00000482878 CLIP1P30622 1438 aa18.46■□□□□ 0.55
CCDC78-213ENST00000482878 KIF21BO75037 1637 aa18.44■□□□□ 0.54
CCDC78-213ENST00000482878 ATAD2BQ9ULI0 1458 aa18.41■□□□□ 0.54
CCDC78-213ENST00000482878 VPS8Q8N3P4 1428 aa18.39■□□□□ 0.54
CCDC78-213ENST00000482878 RAPGEF2Q9Y4G8 1499 aa18.39■□□□□ 0.53
CCDC78-213ENST00000482878 BAZ1BQ9UIG0 1483 aaKnown RBP18.36■□□□□ 0.53
CCDC78-213ENST00000482878 APLP2Q06481 763 aa18.32■□□□□ 0.52
CCDC78-213ENST00000482878 MIER1Q8N108 512 aa18.29■□□□□ 0.52
CCDC78-213ENST00000482878 ANP32EQ9BTT0 268 aa18.23■□□□□ 0.51
CCDC78-213ENST00000482878 TOP2BQ02880 1626 aa18.23■□□□□ 0.51
CCDC78-213ENST00000482878 PRXQ9BXM0 1461 aa18.16■□□□□ 0.5
CCDC78-213ENST00000482878 ARAP1Q96P48 1450 aa18.14■□□□□ 0.49
CCDC78-213ENST00000482878 KANK4Q5T7N3 995 aaPredicted RBP18.13■□□□□ 0.49
CCDC78-213ENST00000482878 ATP1B4Q9UN42 357 aaPredicted RBP18.13■□□□□ 0.49
CCDC78-213ENST00000482878 BIVM-ERCC5R4GMW8 1640 aa18.13■□□□□ 0.49
CCDC78-213ENST00000482878 ERICH3Q5RHP9 1530 aa18.12■□□□□ 0.49
CCDC78-213ENST00000482878 DHX57Q6P158 1386 aaKnown RBP18.11■□□□□ 0.49
CCDC78-213ENST00000482878 CLSPNQ9HAW4 1339 aa18.07■□□□□ 0.48
CCDC78-213ENST00000482878 CUX1P39880 1505 aa18.05■□□□□ 0.48
CCDC78-213ENST00000482878 ITGAEP38570 1179 aa18.03■□□□□ 0.48
CCDC78-213ENST00000482878 KIF27Q86VH2 1401 aa18.01■□□□□ 0.47
CCDC78-213ENST00000482878 NCAPD3P42695 1498 aa18■□□□□ 0.47
CCDC78-213ENST00000482878 RRBP1Q9P2E9 1410 aaKnown RBP18■□□□□ 0.47
CCDC78-213ENST00000482878 TSHZ2Q9NRE2 1034 aa17.99■□□□□ 0.47
CCDC78-213ENST00000482878 SUPT16HQ9Y5B9 1047 aaKnown RBP17.99■□□□□ 0.47
CCDC78-213ENST00000482878 HMGXB3Q12766 1538 aa17.97■□□□□ 0.47
CCDC78-213ENST00000482878 ARHGAP35Q9NRY4 1499 aa17.95■□□□□ 0.46
CCDC78-213ENST00000482878 CCNB3Q8WWL7 1395 aa17.93■□□□□ 0.46
CCDC78-213ENST00000482878 CFTRP13569 1480 aa17.93■□□□□ 0.46
CCDC78-213ENST00000482878 CUX2O14529 1486 aa17.91■□□□□ 0.46
CCDC78-213ENST00000482878 PRKCSHP14314 528 aaPredicted RBP17.89■□□□□ 0.46
CCDC78-213ENST00000482878 P3H3Q8IVL6 736 aa17.86■□□□□ 0.45
CCDC78-213ENST00000482878 BCANQ96GW7 911 aa17.85■□□□□ 0.45
CCDC78-213ENST00000482878 IGF1RP08069 1367 aa17.84■□□□□ 0.45
CCDC78-213ENST00000482878 RAB3GAP2Q9H2M9 1393 aa17.81■□□□□ 0.44
CCDC78-213ENST00000482878 MAPKBP1O60336 1514 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms