RNA–Protein interactions for RNA: ENST00000474926.5

PHTF1-209, Transcript of putative homeodomain transcription factor 1, humanhuman

TSL 2

Gene PHTF1, Length 4,314 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHTF1-209ENST00000474926 SLC4A1APQ9BWU0 796 aaKnown RBP10.45□□□□□ -0.74
PHTF1-209ENST00000474926 KCNH8Q96L42 1107 aa10.45□□□□□ -0.74
PHTF1-209ENST00000474926 PLEKHD1A6NEE1 506 aa10.44□□□□□ -0.74
PHTF1-209ENST00000474926 TSPY4P0CV99 314 aa10.44□□□□□ -0.74
PHTF1-209ENST00000474926 TSPY10P0CW01 314 aa10.44□□□□□ -0.74
PHTF1-209ENST00000474926 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.44□□□□□ -0.74
PHTF1-209ENST00000474926 IGF1RP08069 1367 aa10.43□□□□□ -0.74
PHTF1-209ENST00000474926 BCANQ96GW7 911 aa10.43□□□□□ -0.74
PHTF1-209ENST00000474926 CFDP1Q9UEE9 299 aaPredicted RBP10.42□□□□□ -0.74
PHTF1-209ENST00000474926 SYNJ1O43426 1573 aa10.42□□□□□ -0.74
PHTF1-209ENST00000474926 FHOD3Q2V2M9 1422 aa10.41□□□□□ -0.74
PHTF1-209ENST00000474926 RAD54L2Q9Y4B4 1467 aa10.41□□□□□ -0.74
PHTF1-209ENST00000474926 FGD5Q6ZNL6 1462 aa10.4□□□□□ -0.74
PHTF1-209ENST00000474926 KDM2AQ9Y2K7 1162 aa10.39□□□□□ -0.75
PHTF1-209ENST00000474926 CFTRP13569 1480 aa10.38□□□□□ -0.75
PHTF1-209ENST00000474926 NPM1P06748 294 aaKnown RBP eCLIP10.38□□□□□ -0.75
PHTF1-209ENST00000474926 DNAJC5BQ9UF47 199 aa10.37□□□□□ -0.75
PHTF1-209ENST00000474926 ERICH6Q7L0X2 663 aa10.37□□□□□ -0.75
PHTF1-209ENST00000474926 NESP48681 1621 aa10.36□□□□□ -0.75
PHTF1-209ENST00000474926 UNC13AQ9UPW8 1703 aa10.34□□□□□ -0.75
PHTF1-209ENST00000474926 FMN1Q68DA7 1419 aa10.33□□□□□ -0.76
PHTF1-209ENST00000474926 CHGAP10645 457 aaKnown RBP10.33□□□□□ -0.76
PHTF1-209ENST00000474926 CLSPNQ9HAW4 1339 aa10.33□□□□□ -0.76
PHTF1-209ENST00000474926 ARHGAP35Q9NRY4 1499 aa10.33□□□□□ -0.76
PHTF1-209ENST00000474926 CC2D2AQ9P2K1 1620 aa10.33□□□□□ -0.76
PHTF1-209ENST00000474926 RAB3GAP2Q9H2M9 1393 aa10.32□□□□□ -0.76
PHTF1-209ENST00000474926 SETD5Q9C0A6 1442 aa10.32□□□□□ -0.76
PHTF1-209ENST00000474926 SCAF1Q9H7N4 1312 aaKnown RBP10.32□□□□□ -0.76
PHTF1-209ENST00000474926 HMGXB3Q12766 1538 aa10.31□□□□□ -0.76
PHTF1-209ENST00000474926 CUX1P39880 1505 aa10.31□□□□□ -0.76
PHTF1-209ENST00000474926 EIF4G2P78344 907 aaKnown RBP eCLIP10.3□□□□□ -0.76
PHTF1-209ENST00000474926 KIF21BO75037 1637 aa10.3□□□□□ -0.76
PHTF1-209ENST00000474926 RGL3Q3MIN7 710 aa10.3□□□□□ -0.76
PHTF1-209ENST00000474926 FAM9BQ8IZU0 186 aa10.3□□□□□ -0.76
PHTF1-209ENST00000474926 FOXD1Q16676 465 aa10.29□□□□□ -0.76
PHTF1-209ENST00000474926 HNRNPUQ00839 825 aaKnown RBP eCLIP10.29□□□□□ -0.76
PHTF1-209ENST00000474926 GAPVD1Q14C86 1478 aa10.29□□□□□ -0.76
PHTF1-209ENST00000474926 JPH4Q96JJ6 628 aa10.28□□□□□ -0.76
PHTF1-209ENST00000474926 TOP2BQ02880 1626 aa10.27□□□□□ -0.76
PHTF1-209ENST00000474926 AQRO60306 1485 aaKnown RBP eCLIP10.27□□□□□ -0.773e-7■■■■■ 36.6
PHTF1-209ENST00000474926 ARAP1Q96P48 1450 aa10.26□□□□□ -0.77
PHTF1-209ENST00000474926 PRXQ9BXM0 1461 aa10.26□□□□□ -0.77
PHTF1-209ENST00000474926 PEG3Q9GZU2 1588 aa10.25□□□□□ -0.77
PHTF1-209ENST00000474926 CARMIL2Q6F5E8 1435 aa10.24□□□□□ -0.77
PHTF1-209ENST00000474926 FKBP8Q14318 412 aa10.24□□□□□ -0.77
PHTF1-209ENST00000474926 SENP3Q9H4L4 574 aaPredicted RBP10.24□□□□□ -0.77
PHTF1-209ENST00000474926 DHX57Q6P158 1386 aaKnown RBP10.23□□□□□ -0.77
PHTF1-209ENST00000474926 SALL2Q9Y467 1007 aaPredicted RBP10.23□□□□□ -0.77
PHTF1-209ENST00000474926 MRS2Q9HD23 443 aa10.22□□□□□ -0.77
PHTF1-209ENST00000474926 TOPBP1Q92547 1522 aa10.22□□□□□ -0.77
PHTF1-209ENST00000474926 POLA1P09884 1462 aaPredicted RBP10.22□□□□□ -0.77
PHTF1-209ENST00000474926 SENP3-EIF4A1A0A087X0R7 540 aa10.21□□□□□ -0.78
PHTF1-209ENST00000474926 ERICH3Q5RHP9 1530 aa10.2□□□□□ -0.78
PHTF1-209ENST00000474926 MPHOSPH9Q99550 1183 aa10.2□□□□□ -0.78
PHTF1-209ENST00000474926 PHLDB1Q86UU1 1377 aa10.2□□□□□ -0.78
PHTF1-209ENST00000474926 PLPPR3Q6T4P5 718 aa10.2□□□□□ -0.78
PHTF1-209ENST00000474926 TMC1Q8TDI8 760 aa10.19□□□□□ -0.78
PHTF1-209ENST00000474926 PKD2Q13563 968 aa10.19□□□□□ -0.78
PHTF1-209ENST00000474926 STAG3Q9UJ98 1225 aa10.19□□□□□ -0.78
PHTF1-209ENST00000474926 TIMELESSQ9UNS1 1208 aa10.19□□□□□ -0.78
PHTF1-209ENST00000474926 CARD11Q9BXL7 1154 aa10.18□□□□□ -0.78
PHTF1-209ENST00000474926 PPP1R15AO75807 674 aaPredicted RBP10.18□□□□□ -0.78
PHTF1-209ENST00000474926 HNRNPMP52272 730 aaKnown RBP eCLIP10.18□□□□□ -0.78
PHTF1-209ENST00000474926 ESF1Q9H501 851 aaKnown RBP10.17□□□□□ -0.78
PHTF1-209ENST00000474926 DCAF11Q8TEB1 546 aa10.16□□□□□ -0.78
PHTF1-209ENST00000474926 LRRC9Q6ZRR7 1453 aa10.15□□□□□ -0.78
PHTF1-209ENST00000474926 HSPA5P11021 654 aaKnown RBP10.15□□□□□ -0.79
PHTF1-209ENST00000474926 IRX6P78412 446 aaPredicted RBP10.15□□□□□ -0.79
PHTF1-209ENST00000474926 ZNF644Q9H582 1327 aaPredicted RBP10.14□□□□□ -0.79
PHTF1-209ENST00000474926 L3MBTL2Q969R5 705 aa10.14□□□□□ -0.79
PHTF1-209ENST00000474926 CCDC18Q5T9S5 1454 aa10.13□□□□□ -0.79
PHTF1-209ENST00000474926 NUP155O75694 1391 aa10.13□□□□□ -0.79
PHTF1-209ENST00000474926 DNMBPQ6XZF7 1577 aa10.11□□□□□ -0.79
PHTF1-209ENST00000474926 CASKIN1Q8WXD9 1431 aa10.11□□□□□ -0.79
PHTF1-209ENST00000474926 GRIN2BQ13224 1484 aa10.11□□□□□ -0.79
PHTF1-209ENST00000474926 PTPRGP23470 1445 aa10.11□□□□□ -0.79
PHTF1-209ENST00000474926 FGD6Q6ZV73 1430 aa10.11□□□□□ -0.79
PHTF1-209ENST00000474926 ANKRD30AQ9BXX3 1397 aa10.1□□□□□ -0.79
PHTF1-209ENST00000474926 EFCAB2Q5VUJ9 269 aa10.1□□□□□ -0.79
PHTF1-209ENST00000474926 MRC2Q9UBG0 1479 aa10.09□□□□□ -0.79
PHTF1-209ENST00000474926 ABCA10Q8WWZ4 1543 aa10.08□□□□□ -0.8
PHTF1-209ENST00000474926 RRBP1Q9P2E9 1410 aaKnown RBP10.08□□□□□ -0.8
PHTF1-209ENST00000474926 MYOM3Q5VTT5 1437 aa10.07□□□□□ -0.8
PHTF1-209ENST00000474926 DAXXQ9UER7 740 aaPredicted RBP10.07□□□□□ -0.8
PHTF1-209ENST00000474926 NCOA2Q15596 1464 aa10.06□□□□□ -0.8
PHTF1-209ENST00000474926 GGT6Q6P531 493 aa10.06□□□□□ -0.8
PHTF1-209ENST00000474926 URB2Q14146 1524 aaKnown RBP10.06□□□□□ -0.8
PHTF1-209ENST00000474926 CANXP27824 592 aaKnown RBP10.05□□□□□ -0.8
PHTF1-209ENST00000474926 FYCO1Q9BQS8 1478 aa10.05□□□□□ -0.8
PHTF1-209ENST00000474926 SUPT16HQ9Y5B9 1047 aaKnown RBP10.04□□□□□ -0.8
PHTF1-209ENST00000474926 WDR43Q15061 677 aaKnown RBP eCLIP10.04□□□□□ -0.8
PHTF1-209ENST00000474926 LAMC3Q9Y6N6 1575 aa10.04□□□□□ -0.8
PHTF1-209ENST00000474926 IFT140Q96RY7 1462 aa10.04□□□□□ -0.8
PHTF1-209ENST00000474926 BIVM-ERCC5R4GMW8 1640 aa10.04□□□□□ -0.8
PHTF1-209ENST00000474926 SNAPC4Q5SXM2 1469 aa10.02□□□□□ -0.8
PHTF1-209ENST00000474926 KIF3BO15066 747 aa10.02□□□□□ -0.8
PHTF1-209ENST00000474926 CC2D1BQ5T0F9 858 aaKnown RBP10.02□□□□□ -0.81
PHTF1-209ENST00000474926 TIAM1Q13009 1591 aa10.02□□□□□ -0.81
PHTF1-209ENST00000474926 KNSTRNQ9Y448 316 aa10.01□□□□□ -0.81
PHTF1-209ENST00000474926 NEFMP07197 916 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms