RNA–Protein interactions for RNA: ENST00000474926.5

PHTF1-209, Transcript of putative homeodomain transcription factor 1, humanhuman

TSL 2

Gene PHTF1, Length 4,314 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHTF1-209ENST00000474926 NISCHQ9Y2I1 1504 aa14.24□□□□□ -0.13
PHTF1-209ENST00000474926 DCAF8L2P0C7V8 631 aa13.5□□□□□ -0.25
PHTF1-209ENST00000474926 SHROOM4Q9ULL8 1493 aa13.02□□□□□ -0.32
PHTF1-209ENST00000474926 SUPT5HO00267 1087 aaKnown RBP12.95□□□□□ -0.34
PHTF1-209ENST00000474926 EHMT2Q96KQ7 1210 aa12.29□□□□□ -0.44
PHTF1-209ENST00000474926 FAM9AQ8IZU1 332 aaPredicted RBP12.13□□□□□ -0.47
PHTF1-209ENST00000474926 ABCC9O60706 1549 aa12.01□□□□□ -0.49
PHTF1-209ENST00000474926 TRIM41Q8WV44 630 aa11.98□□□□□ -0.49
PHTF1-209ENST00000474926 CHIC1Q5VXU3 224 aa11.9□□□□□ -0.5
PHTF1-209ENST00000474926 PCGF6Q9BYE7 350 aa11.89□□□□□ -0.51
PHTF1-209ENST00000474926 ZCCHC6Q5VYS8 1495 aaKnown RBP11.86□□□□□ -0.51
PHTF1-209ENST00000474926 TTBK1Q5TCY1 1321 aaPredicted RBP11.81□□□□□ -0.52
PHTF1-209ENST00000474926 LOC105371045A0A1W2PR82 267 aa11.79□□□□□ -0.52
PHTF1-209ENST00000474926 CCDC180Q9P1Z9 1646 aa11.78□□□□□ -0.52
PHTF1-209ENST00000474926 PABPN1Q86U42 306 aaKnown RBP eCLIP11.78□□□□□ -0.52
PHTF1-209ENST00000474926 RANGAP1P46060 587 aaPredicted RBP11.75□□□□□ -0.53
PHTF1-209ENST00000474926 UBTFP17480 764 aaKnown RBP11.67□□□□□ -0.54
PHTF1-209ENST00000474926 APLP2Q06481 763 aa11.67□□□□□ -0.54
PHTF1-209ENST00000474926 PPARGC1BQ86YN6 1023 aaKnown RBP11.65□□□□□ -0.54
PHTF1-209ENST00000474926 SCRIBQ14160 1630 aa11.61□□□□□ -0.55
PHTF1-209ENST00000474926 TRIM26Q12899 539 aaPredicted RBP11.47□□□□□ -0.57
PHTF1-209ENST00000474926 ATP1B4Q9UN42 357 aaPredicted RBP11.46□□□□□ -0.57
PHTF1-209ENST00000474926 CCER1Q8TC90 406 aaPredicted RBP11.45□□□□□ -0.58
PHTF1-209ENST00000474926 HRCP23327 699 aa11.37□□□□□ -0.59
PHTF1-209ENST00000474926 ZEB1P37275 1124 aaPredicted RBP11.36□□□□□ -0.59
PHTF1-209ENST00000474926 RSF1Q96T23 1441 aaPredicted RBP11.36□□□□□ -0.59
PHTF1-209ENST00000474926 DCAF1Q9Y4B6 1507 aa11.35□□□□□ -0.59
PHTF1-209ENST00000474926 NACADO15069 1562 aa11.3□□□□□ -0.6
PHTF1-209ENST00000474926 RB1CC1Q8TDY2 1594 aa11.3□□□□□ -0.6
PHTF1-209ENST00000474926 MYO15BQ96JP2 1530 aa11.27□□□□□ -0.61
PHTF1-209ENST00000474926 HNRNPUL2Q1KMD3 747 aaKnown RBP11.25□□□□□ -0.61
PHTF1-209ENST00000474926 CECR2Q9BXF3 1484 aa11.25□□□□□ -0.61
PHTF1-209ENST00000474926 ITGAEP38570 1179 aa11.23□□□□□ -0.61
PHTF1-209ENST00000474926 CSRNP3Q8WYN3 585 aa11.23□□□□□ -0.61
PHTF1-209ENST00000474926 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.21□□□□□ -0.62
PHTF1-209ENST00000474926 MROH2BQ7Z745 1585 aa11.09□□□□□ -0.63
PHTF1-209ENST00000474926 BAZ1AQ9NRL2 1556 aaPredicted RBP11.06□□□□□ -0.64
PHTF1-209ENST00000474926 P3H3Q8IVL6 736 aa11.05□□□□□ -0.64
PHTF1-209ENST00000474926 YTHDC1Q96MU7 727 aaKnown RBP11.02□□□□□ -0.65
PHTF1-209ENST00000474926 FAM50AQ14320 339 aaKnown RBP11□□□□□ -0.65
PHTF1-209ENST00000474926 BAZ1BQ9UIG0 1483 aaKnown RBP10.99□□□□□ -0.65
PHTF1-209ENST00000474926 CENPBP07199 599 aaPredicted RBP10.99□□□□□ -0.65
PHTF1-209ENST00000474926 WRNQ14191 1432 aaPredicted RBP eCLIP10.95□□□□□ -0.66
PHTF1-209ENST00000474926 FBLN2P98095 1184 aa10.95□□□□□ -0.66
PHTF1-209ENST00000474926 WIZO95785 1651 aa10.94□□□□□ -0.66
PHTF1-209ENST00000474926 CCDC88BA6NC98 1476 aa10.93□□□□□ -0.66
PHTF1-209ENST00000474926 ARID3CA6NKF2 412 aa10.92□□□□□ -0.66
PHTF1-209ENST00000474926 SOGA1O94964 1423 aa10.89□□□□□ -0.67
PHTF1-209ENST00000474926 DIEXFQ68CQ4 756 aaKnown RBP10.88□□□□□ -0.67
PHTF1-209ENST00000474926 ABCC8Q09428 1581 aa10.87□□□□□ -0.67
PHTF1-209ENST00000474926 CEP162Q5TB80 1403 aa10.86□□□□□ -0.67
PHTF1-209ENST00000474926 NEUROD1Q13562 356 aa10.85□□□□□ -0.67
PHTF1-209ENST00000474926 CLIP1P30622 1438 aa10.85□□□□□ -0.67
PHTF1-209ENST00000474926 EEA1Q15075 1411 aa10.84□□□□□ -0.67
PHTF1-209ENST00000474926 GOLGA3Q08378 1498 aa10.82□□□□□ -0.68
PHTF1-209ENST00000474926 TRIM52Q96A61 297 aa10.81□□□□□ -0.68
PHTF1-209ENST00000474926 MYT1LQ9UL68 1186 aa10.81□□□□□ -0.68
PHTF1-209ENST00000474926 PELP1Q8IZL8 1130 aaKnown RBP10.8□□□□□ -0.68
PHTF1-209ENST00000474926 TNIKQ9UKE5 1360 aa10.8□□□□□ -0.68
PHTF1-209ENST00000474926 TOP2AP11388 1531 aaKnown RBP10.8□□□□□ -0.68
PHTF1-209ENST00000474926 SMARCA4P51532 1647 aa10.78□□□□□ -0.68
PHTF1-209ENST00000474926 POLR3GLQ9BT43 218 aa10.77□□□□□ -0.68
PHTF1-209ENST00000474926 ATAD2BQ9ULI0 1458 aa10.76□□□□□ -0.69
PHTF1-209ENST00000474926 CNGB1Q14028 1251 aaPredicted RBP10.76□□□□□ -0.69
PHTF1-209ENST00000474926 KIF27Q86VH2 1401 aa10.75□□□□□ -0.69
PHTF1-209ENST00000474926 SMARCA2P51531 1590 aa10.75□□□□□ -0.69
PHTF1-209ENST00000474926 CEP164Q9UPV0 1460 aa10.75□□□□□ -0.69
PHTF1-209ENST00000474926 ZNF316A6NFI3 1004 aaPredicted RBP10.74□□□□□ -0.69
PHTF1-209ENST00000474926 ZNF777Q9ULD5 760 aaPredicted RBP10.7□□□□□ -0.7
PHTF1-209ENST00000474926 RUSC2Q8N2Y8 1516 aa10.69□□□□□ -0.7
PHTF1-209ENST00000474926 CUX2O14529 1486 aa10.67□□□□□ -0.7
PHTF1-209ENST00000474926 CHIC2Q9UKJ5 165 aa10.66□□□□□ -0.7
PHTF1-209ENST00000474926 CHMP7Q8WUX9 453 aaPredicted RBP10.65□□□□□ -0.7
PHTF1-209ENST00000474926 ZNF326Q5BKZ1 582 aaKnown RBP10.64□□□□□ -0.71
PHTF1-209ENST00000474926 CDK11AQ9UQ88 783 aaPredicted RBP10.64□□□□□ -0.71
PHTF1-209ENST00000474926 CARMIL1Q5VZK9 1371 aa10.64□□□□□ -0.71
PHTF1-209ENST00000474926 NEFLP07196 543 aa10.64□□□□□ -0.71
PHTF1-209ENST00000474926 MTUS2Q5JR59 1369 aa10.63□□□□□ -0.71
PHTF1-209ENST00000474926 CADPSQ9ULU8 1353 aa10.62□□□□□ -0.71
PHTF1-209ENST00000474926 KANK4Q5T7N3 995 aaPredicted RBP10.59□□□□□ -0.71
PHTF1-209ENST00000474926 TDRD9Q8NDG6 1382 aaKnown RBP10.58□□□□□ -0.72
PHTF1-209ENST00000474926 RAPGEF2Q9Y4G8 1499 aa10.57□□□□□ -0.72
PHTF1-209ENST00000474926 VPS8Q8N3P4 1428 aa10.56□□□□□ -0.72
PHTF1-209ENST00000474926 RRP7BPQ9NSQ0 103 aa10.55□□□□□ -0.72
PHTF1-209ENST00000474926 GTF3C3Q9Y5Q9 886 aa10.54□□□□□ -0.72
PHTF1-209ENST00000474926 ERCC6Q03468 1493 aa10.52□□□□□ -0.73
PHTF1-209ENST00000474926 TONSLQ96HA7 1378 aa10.52□□□□□ -0.73
PHTF1-209ENST00000474926 NCAPD3P42695 1498 aa10.52□□□□□ -0.73
PHTF1-209ENST00000474926 ANP32CO43423 234 aa10.52□□□□□ -0.73
PHTF1-209ENST00000474926 HIRIP3Q9BW71 556 aaPredicted RBP10.52□□□□□ -0.73
PHTF1-209ENST00000474926 EIF4G1Q04637 1599 aaKnown RBP10.51□□□□□ -0.73
PHTF1-209ENST00000474926 PDS5BQ9NTI5 1447 aa10.51□□□□□ -0.73
PHTF1-209ENST00000474926 DDX10Q13206 875 aaKnown RBP10.5□□□□□ -0.73
PHTF1-209ENST00000474926 BICRAQ9NZM4 1560 aa10.5□□□□□ -0.73
PHTF1-209ENST00000474926 ACIN1Q9UKV3 1341 aaKnown RBP10.49□□□□□ -0.73
PHTF1-209ENST00000474926 CCNB3Q8WWL7 1395 aa10.48□□□□□ -0.73
PHTF1-209ENST00000474926 MIER1Q8N108 512 aa10.48□□□□□ -0.73
PHTF1-209ENST00000474926 FANCD2Q9BXW9 1451 aa10.47□□□□□ -0.73
PHTF1-209ENST00000474926 FHAD1B1AJZ9 1412 aa10.46□□□□□ -0.73
PHTF1-209ENST00000474926 SIN3AQ96ST3 1273 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms