RNA–Protein interactions for RNA: ENST00000474546.1

CCDC93-208, Transcript of coiled-coil domain containing 93, humanhuman

TSL 3

Gene CCDC93, Length 452 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC93-208ENST00000474546 MAGI1Q96QZ7 1491 aaPredicted RBP12.16□□□□□ -0.46
CCDC93-208ENST00000474546 EEA1Q15075 1411 aa12.16□□□□□ -0.46
CCDC93-208ENST00000474546 PRDM2Q13029 1718 aa12.16□□□□□ -0.46
CCDC93-208ENST00000474546 ACIN1Q9UKV3 1341 aaKnown RBP12.15□□□□□ -0.46
CCDC93-208ENST00000474546 NPM1P06748 294 aaKnown RBP eCLIP12.15□□□□□ -0.46
CCDC93-208ENST00000474546 SCAF1Q9H7N4 1312 aaKnown RBP12.14□□□□□ -0.47
CCDC93-208ENST00000474546 CLSPNQ9HAW4 1339 aa12.11□□□□□ -0.47
CCDC93-208ENST00000474546 WDR97A6NE52 1622 aa12.11□□□□□ -0.47
CCDC93-208ENST00000474546 PCF11O94913 1555 aaKnown RBP12.07□□□□□ -0.48
CCDC93-208ENST00000474546 CCER1Q8TC90 406 aaPredicted RBP12.06□□□□□ -0.48
CCDC93-208ENST00000474546 DNMBPQ6XZF7 1577 aa12.05□□□□□ -0.48
CCDC93-208ENST00000474546 CEP170Q5SW79 1584 aa12.05□□□□□ -0.48
CCDC93-208ENST00000474546 TDRD9Q8NDG6 1382 aaKnown RBP12.03□□□□□ -0.48
CCDC93-208ENST00000474546 DIEXFQ68CQ4 756 aaKnown RBP12.01□□□□□ -0.49
CCDC93-208ENST00000474546 GRIN2BQ13224 1484 aa12□□□□□ -0.49
CCDC93-208ENST00000474546 POLA1P09884 1462 aaPredicted RBP11.98□□□□□ -0.49
CCDC93-208ENST00000474546 TNIKQ9UKE5 1360 aa11.98□□□□□ -0.49
CCDC93-208ENST00000474546 TOP2AP11388 1531 aaKnown RBP11.97□□□□□ -0.49
CCDC93-208ENST00000474546 PPRC1Q5VV67 1664 aaKnown RBP11.97□□□□□ -0.49
CCDC93-208ENST00000474546 SHROOM2Q13796 1616 aa11.97□□□□□ -0.49
CCDC93-208ENST00000474546 PTPRMP28827 1452 aa11.95□□□□□ -0.5
CCDC93-208ENST00000474546 COL17A1Q9UMD9 1497 aaPredicted RBP11.94□□□□□ -0.5
CCDC93-208ENST00000474546 TTBK1Q5TCY1 1321 aaPredicted RBP11.92□□□□□ -0.5
CCDC93-208ENST00000474546 SOGA1O94964 1423 aa11.92□□□□□ -0.5
CCDC93-208ENST00000474546 RAD54L2Q9Y4B4 1467 aa11.91□□□□□ -0.5
CCDC93-208ENST00000474546 ZNF316A6NFI3 1004 aaPredicted RBP11.91□□□□□ -0.5
CCDC93-208ENST00000474546 WIZO95785 1651 aa11.91□□□□□ -0.5
CCDC93-208ENST00000474546 CEP162Q5TB80 1403 aa11.9□□□□□ -0.5
CCDC93-208ENST00000474546 FAM9AQ8IZU1 332 aaPredicted RBP11.9□□□□□ -0.5
CCDC93-208ENST00000474546 NEUROD1Q13562 356 aa11.89□□□□□ -0.51
CCDC93-208ENST00000474546 GTF3C3Q9Y5Q9 886 aa11.88□□□□□ -0.51
CCDC93-208ENST00000474546 ADCY10Q96PN6 1610 aa11.88□□□□□ -0.51
CCDC93-208ENST00000474546 GOLGA3Q08378 1498 aa11.88□□□□□ -0.51
CCDC93-208ENST00000474546 GLI2P10070 1586 aa11.88□□□□□ -0.51
CCDC93-208ENST00000474546 TEX14Q8IWB6 1497 aa11.86□□□□□ -0.51
CCDC93-208ENST00000474546 PBRM1Q86U86 1689 aa11.85□□□□□ -0.51
CCDC93-208ENST00000474546 ADAMTSL3P82987 1691 aa11.84□□□□□ -0.51
CCDC93-208ENST00000474546 MED1Q15648 1581 aaPredicted RBP11.84□□□□□ -0.51
CCDC93-208ENST00000474546 IQSEC2Q5JU85 1478 aa11.84□□□□□ -0.51
CCDC93-208ENST00000474546 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.84□□□□□ -0.51
CCDC93-208ENST00000474546 HSPA2P54652 639 aa11.84□□□□□ -0.51
CCDC93-208ENST00000474546 NUP160Q12769 1436 aa11.84□□□□□ -0.51
CCDC93-208ENST00000474546 KIF21BO75037 1637 aa11.82□□□□□ -0.52
CCDC93-208ENST00000474546 DMRT2Q9Y5R5 561 aa11.82□□□□□ -0.52
CCDC93-208ENST00000474546 PRG4Q92954 1404 aaPredicted RBP11.82□□□□□ -0.52
CCDC93-208ENST00000474546 GRIN2AQ12879 1464 aa11.82□□□□□ -0.52
CCDC93-208ENST00000474546 PHF23Q9BUL5 403 aaPredicted RBP11.79□□□□□ -0.52
CCDC93-208ENST00000474546 CSRNP3Q8WYN3 585 aa11.78□□□□□ -0.52
CCDC93-208ENST00000474546 PLB1Q6P1J6 1458 aa11.76□□□□□ -0.53
CCDC93-208ENST00000474546 MAP3K4Q9Y6R4 1608 aa11.75□□□□□ -0.53
CCDC93-208ENST00000474546 CCDC88BA6NC98 1476 aa11.74□□□□□ -0.53
CCDC93-208ENST00000474546 KIAA0586Q9BVV6 1533 aa11.74□□□□□ -0.53
CCDC93-208ENST00000474546 JPH4Q96JJ6 628 aa11.73□□□□□ -0.53
CCDC93-208ENST00000474546 APLP2Q06481 763 aa11.72□□□□□ -0.53
CCDC93-208ENST00000474546 SRCAPQ6ZRS2 3230 aa11.71□□□□□ -0.53
CCDC93-208ENST00000474546 VPS8Q8N3P4 1428 aa11.71□□□□□ -0.53
CCDC93-208ENST00000474546 YEATS2Q9ULM3 1422 aa11.69□□□□□ -0.54
CCDC93-208ENST00000474546 FGD5Q6ZNL6 1462 aa11.69□□□□□ -0.54
CCDC93-208ENST00000474546 ASXL2Q76L83 1435 aa11.69□□□□□ -0.54
CCDC93-208ENST00000474546 MADDQ8WXG6 1647 aa11.68□□□□□ -0.54
CCDC93-208ENST00000474546 BCORL1Q5H9F3 1711 aa11.68□□□□□ -0.54
CCDC93-208ENST00000474546 UBTFP17480 764 aaKnown RBP11.67□□□□□ -0.54
CCDC93-208ENST00000474546 CLIP1P30622 1438 aa11.66□□□□□ -0.54
CCDC93-208ENST00000474546 LTBP4Q8N2S1 1624 aa11.64□□□□□ -0.55
CCDC93-208ENST00000474546 IFFO2Q5TF58 517 aa11.64□□□□□ -0.55
CCDC93-208ENST00000474546 PTPRTO14522 1441 aa11.63□□□□□ -0.55
CCDC93-208ENST00000474546 CFAP43Q8NDM7 1665 aa11.63□□□□□ -0.55
CCDC93-208ENST00000474546 UBAP1LF5GYI3 381 aa11.63□□□□□ -0.55
CCDC93-208ENST00000474546 ERICH3Q5RHP9 1530 aa11.63□□□□□ -0.55
CCDC93-208ENST00000474546 STRCQ7RTU9 1775 aa11.63□□□□□ -0.55
CCDC93-208ENST00000474546 ABCA5Q8WWZ7 1642 aa11.62□□□□□ -0.55
CCDC93-208ENST00000474546 ADAMTS12P58397 1594 aa11.62□□□□□ -0.55
CCDC93-208ENST00000474546 RIMS1Q86UR5 1692 aaKnown RBP11.62□□□□□ -0.55
CCDC93-208ENST00000474546 EPRSP07814 1512 aaKnown RBP11.61□□□□□ -0.55
CCDC93-208ENST00000474546 ABCC2Q92887 1545 aa11.61□□□□□ -0.55
CCDC93-208ENST00000474546 FHAD1B1AJZ9 1412 aa11.56□□□□□ -0.56
CCDC93-208ENST00000474546 HSPA1LP34931 641 aa11.56□□□□□ -0.56
CCDC93-208ENST00000474546 EHMT2Q96KQ7 1210 aa11.55□□□□□ -0.56
CCDC93-208ENST00000474546 CUL7Q14999 1698 aa11.55□□□□□ -0.56
CCDC93-208ENST00000474546 MIER1Q8N108 512 aa11.54□□□□□ -0.56
CCDC93-208ENST00000474546 PREX1Q8TCU6 1659 aa11.54□□□□□ -0.56
CCDC93-208ENST00000474546 ARID4BQ4LE39 1312 aaPredicted RBP11.54□□□□□ -0.56
CCDC93-208ENST00000474546 MAGI3Q5TCQ9 1506 aa11.53□□□□□ -0.56
CCDC93-208ENST00000474546 ABCA10Q8WWZ4 1543 aa11.52□□□□□ -0.57
CCDC93-208ENST00000474546 TIMELESSQ9UNS1 1208 aa11.51□□□□□ -0.57
CCDC93-208ENST00000474546 MAP3K1Q13233 1512 aa11.5□□□□□ -0.57
CCDC93-208ENST00000474546 RRBP1Q9P2E9 1410 aaKnown RBP11.5□□□□□ -0.57
CCDC93-208ENST00000474546 RUSC2Q8N2Y8 1516 aa11.5□□□□□ -0.57
CCDC93-208ENST00000474546 BIVM-ERCC5R4GMW8 1640 aa11.49□□□□□ -0.57
CCDC93-208ENST00000474546 ARAP3Q8WWN8 1544 aa11.49□□□□□ -0.57
CCDC93-208ENST00000474546 PLPPR3Q6T4P5 718 aa11.48□□□□□ -0.57
CCDC93-208ENST00000474546 YTHDC1Q96MU7 727 aaKnown RBP11.48□□□□□ -0.57
CCDC93-208ENST00000474546 PTPRGP23470 1445 aa11.48□□□□□ -0.57
CCDC93-208ENST00000474546 DHX57Q6P158 1386 aaKnown RBP11.46□□□□□ -0.57
CCDC93-208ENST00000474546 RGS17Q9UGC6 210 aaPredicted RBP11.46□□□□□ -0.57
CCDC93-208ENST00000474546 CD109Q6YHK3 1445 aa11.45□□□□□ -0.58
CCDC93-208ENST00000474546 CUX1P39880 1505 aa11.45□□□□□ -0.58
CCDC93-208ENST00000474546 UHRF1BP1LA0JNW5 1464 aa11.44□□□□□ -0.58
CCDC93-208ENST00000474546 HNRNPUL2Q1KMD3 747 aaKnown RBP11.44□□□□□ -0.58
CCDC93-208ENST00000474546 SUPT16HQ9Y5B9 1047 aaKnown RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms