RNA–Protein interactions for RNA: ENST00000473344.1

CKS1B-205, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 3

Gene CKS1B, Length 390 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-205ENST00000473344 SYNJ1O43426 1573 aa12.56□□□□□ -0.4
CKS1B-205ENST00000473344 GRIN2BQ13224 1484 aa12.56□□□□□ -0.4
CKS1B-205ENST00000473344 CUX1P39880 1505 aa12.55□□□□□ -0.4
CKS1B-205ENST00000473344 CLASP1Q7Z460 1538 aa12.53□□□□□ -0.4
CKS1B-205ENST00000473344 SYNJ2O15056 1496 aa12.53□□□□□ -0.4
CKS1B-205ENST00000473344 GAPVD1Q14C86 1478 aa12.5□□□□□ -0.41
CKS1B-205ENST00000473344 PBRM1Q86U86 1689 aa12.45□□□□□ -0.42
CKS1B-205ENST00000473344 ABCA10Q8WWZ4 1543 aa12.44□□□□□ -0.42
CKS1B-205ENST00000473344 SUPT5HO00267 1087 aaKnown RBP12.44□□□□□ -0.42
CKS1B-205ENST00000473344 ABCA5Q8WWZ7 1642 aa12.41□□□□□ -0.42
CKS1B-205ENST00000473344 WRNQ14191 1432 aaPredicted RBP eCLIP12.41□□□□□ -0.42
CKS1B-205ENST00000473344 GRIN2AQ12879 1464 aa12.4□□□□□ -0.43
CKS1B-205ENST00000473344 FHAD1B1AJZ9 1412 aa12.34□□□□□ -0.43
CKS1B-205ENST00000473344 ADAMTS12P58397 1594 aa12.34□□□□□ -0.43
CKS1B-205ENST00000473344 NUP160Q12769 1436 aa12.33□□□□□ -0.44
CKS1B-205ENST00000473344 CEP170Q5SW79 1584 aa12.32□□□□□ -0.44
CKS1B-205ENST00000473344 ERCC6L2Q5T890 1561 aa12.32□□□□□ -0.44
CKS1B-205ENST00000473344 TOP2BQ02880 1626 aa12.32□□□□□ -0.44
CKS1B-205ENST00000473344 BIVM-ERCC5R4GMW8 1640 aa12.3□□□□□ -0.44
CKS1B-205ENST00000473344 ERICH3Q5RHP9 1530 aa12.29□□□□□ -0.44
CKS1B-205ENST00000473344 SHROOM2Q13796 1616 aa12.26□□□□□ -0.45
CKS1B-205ENST00000473344 PRG4Q92954 1404 aaPredicted RBP12.26□□□□□ -0.45
CKS1B-205ENST00000473344 JPH4Q96JJ6 628 aa12.25□□□□□ -0.45
CKS1B-205ENST00000473344 NPM1P06748 294 aaKnown RBP eCLIP12.24□□□□□ -0.45
CKS1B-205ENST00000473344 U3KPZ7 1027 aaPredicted RBP12.24□□□□□ -0.45
CKS1B-205ENST00000473344 FAM69CQ0P6D2 419 aa12.19□□□□□ -0.46
CKS1B-205ENST00000473344 RUSC2Q8N2Y8 1516 aa12.17□□□□□ -0.46
CKS1B-205ENST00000473344 KCNA4P22459 653 aa12.16□□□□□ -0.46
CKS1B-205ENST00000473344 ABCC10Q5T3U5 1492 aa12.14□□□□□ -0.47
CKS1B-205ENST00000473344 KIF13AQ9H1H9 1805 aa12.14□□□□□ -0.47
CKS1B-205ENST00000473344 APLP2Q06481 763 aa12.13□□□□□ -0.47
CKS1B-205ENST00000473344 KIF27Q86VH2 1401 aa12.12□□□□□ -0.47
CKS1B-205ENST00000473344 MAPKBP1O60336 1514 aa12.12□□□□□ -0.47
CKS1B-205ENST00000473344 KIAA0586Q9BVV6 1533 aa12.12□□□□□ -0.47
CKS1B-205ENST00000473344 CAPN15O75808 1086 aa12.12□□□□□ -0.47
CKS1B-205ENST00000473344 IGF1RP08069 1367 aa12.1□□□□□ -0.47
CKS1B-205ENST00000473344 ADCY10Q96PN6 1610 aa12.09□□□□□ -0.47
CKS1B-205ENST00000473344 CUL7Q14999 1698 aa12.09□□□□□ -0.47
CKS1B-205ENST00000473344 DIP2BQ9P265 1576 aa12.09□□□□□ -0.47
CKS1B-205ENST00000473344 TTBK1Q5TCY1 1321 aaPredicted RBP12.09□□□□□ -0.47
CKS1B-205ENST00000473344 DSG3P32926 999 aa12.07□□□□□ -0.48
CKS1B-205ENST00000473344 PTPRGP23470 1445 aa12.06□□□□□ -0.48
CKS1B-205ENST00000473344 CARMIL2Q6F5E8 1435 aa12.05□□□□□ -0.48
CKS1B-205ENST00000473344 KDM6BO15054 1643 aa12.05□□□□□ -0.48
CKS1B-205ENST00000473344 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.05□□□□□ -0.48
CKS1B-205ENST00000473344 HNRNPUL2Q1KMD3 747 aaKnown RBP12.05□□□□□ -0.48
CKS1B-205ENST00000473344 SPINK5Q9NQ38 1064 aaPredicted RBP12.05□□□□□ -0.48
CKS1B-205ENST00000473344 CARMIL1Q5VZK9 1371 aa12.05□□□□□ -0.48
CKS1B-205ENST00000473344 TNIKQ9UKE5 1360 aa12.02□□□□□ -0.49
CKS1B-205ENST00000473344 SLC4A2P04920 1241 aa12.01□□□□□ -0.49
CKS1B-205ENST00000473344 ABCC2Q92887 1545 aa11.99□□□□□ -0.49
CKS1B-205ENST00000473344 TSPOAP1O95153 1857 aa11.99□□□□□ -0.49
CKS1B-205ENST00000473344 IQGAP2Q13576 1575 aa11.98□□□□□ -0.49
CKS1B-205ENST00000473344 KDM4FA0A1W2PPD8 638 aa11.98□□□□□ -0.49
CKS1B-205ENST00000473344 PLB1Q6P1J6 1458 aa11.97□□□□□ -0.49
CKS1B-205ENST00000473344 ASXL2Q76L83 1435 aa11.97□□□□□ -0.49
CKS1B-205ENST00000473344 ZNF219Q9P2Y4 722 aaPredicted RBP11.96□□□□□ -0.49
CKS1B-205ENST00000473344 UACAQ9BZF9 1416 aa11.95□□□□□ -0.5
CKS1B-205ENST00000473344 UHRF1BP1LA0JNW5 1464 aa11.94□□□□□ -0.5
CKS1B-205ENST00000473344 SAMD1Q6SPF0 538 aaPredicted RBP11.93□□□□□ -0.5
CKS1B-205ENST00000473344 GLI2P10070 1586 aa11.92□□□□□ -0.5
CKS1B-205ENST00000473344 RAPGEF2Q9Y4G8 1499 aa11.92□□□□□ -0.5
CKS1B-205ENST00000473344 DISP1Q96F81 1524 aa11.91□□□□□ -0.5
CKS1B-205ENST00000473344 EPRSP07814 1512 aaKnown RBP11.89□□□□□ -0.51
CKS1B-205ENST00000473344 KDM5BQ9UGL1 1544 aa11.89□□□□□ -0.51
CKS1B-205ENST00000473344 TEX14Q8IWB6 1497 aa11.89□□□□□ -0.51
CKS1B-205ENST00000473344 UGGT2Q9NYU1 1516 aa11.88□□□□□ -0.51
CKS1B-205ENST00000473344 KIAA0556O60303 1618 aa11.86□□□□□ -0.51
CKS1B-205ENST00000473344 ADGRL1O94910 1474 aa11.86□□□□□ -0.51
CKS1B-205ENST00000473344 PPRC1Q5VV67 1664 aaKnown RBP11.86□□□□□ -0.51
CKS1B-205ENST00000473344 ZCCHC11Q5TAX3 1644 aaKnown RBP11.86□□□□□ -0.51
CKS1B-205ENST00000473344 MAP3K4Q9Y6R4 1608 aa11.85□□□□□ -0.51
CKS1B-205ENST00000473344 COL17A1Q9UMD9 1497 aaPredicted RBP11.83□□□□□ -0.52
CKS1B-205ENST00000473344 WDR7Q9Y4E6 1490 aa11.83□□□□□ -0.52
CKS1B-205ENST00000473344 FAM9AQ8IZU1 332 aaPredicted RBP11.83□□□□□ -0.52
CKS1B-205ENST00000473344 GOLGA3Q08378 1498 aa11.83□□□□□ -0.52
CKS1B-205ENST00000473344 KCNH8Q96L42 1107 aa11.82□□□□□ -0.52
CKS1B-205ENST00000473344 CD109Q6YHK3 1445 aa11.79□□□□□ -0.52
CKS1B-205ENST00000473344 POTEHQ6S545 545 aa11.78□□□□□ -0.52
CKS1B-205ENST00000473344 ILDR1Q86SU0 546 aaPredicted RBP11.78□□□□□ -0.52
CKS1B-205ENST00000473344 CTTNBP2Q8WZ74 1663 aa11.78□□□□□ -0.52
CKS1B-205ENST00000473344 MAGI3Q5TCQ9 1506 aa11.76□□□□□ -0.53
CKS1B-205ENST00000473344 ABCB7O75027 752 aa11.75□□□□□ -0.53
CKS1B-205ENST00000473344 ABCA8O94911 1581 aa11.75□□□□□ -0.53
CKS1B-205ENST00000473344 CFAP43Q8NDM7 1665 aa11.75□□□□□ -0.53
CKS1B-205ENST00000473344 ARID3CA6NKF2 412 aa11.74□□□□□ -0.53
CKS1B-205ENST00000473344 HECW2Q9P2P5 1572 aa11.74□□□□□ -0.53
CKS1B-205ENST00000473344 P3H3Q8IVL6 736 aa11.73□□□□□ -0.53
CKS1B-205ENST00000473344 PRXQ9BXM0 1461 aa11.73□□□□□ -0.53
CKS1B-205ENST00000473344 MYCNP04198 464 aaPredicted RBP11.71□□□□□ -0.53
CKS1B-205ENST00000473344 ARAP3Q8WWN8 1544 aa11.67□□□□□ -0.54
CKS1B-205ENST00000473344 RBM42Q9BTD8 480 aaKnown RBP11.67□□□□□ -0.54
CKS1B-205ENST00000473344 ATP10BO94823 1461 aa11.67□□□□□ -0.54
CKS1B-205ENST00000473344 PHLDB1Q86UU1 1377 aa11.67□□□□□ -0.54
CKS1B-205ENST00000473344 KIF21BO75037 1637 aa11.66□□□□□ -0.54
CKS1B-205ENST00000473344 CSRNP3Q8WYN3 585 aa11.65□□□□□ -0.54
CKS1B-205ENST00000473344 RANGAP1P46060 587 aaPredicted RBP11.64□□□□□ -0.55
CKS1B-205ENST00000473344 RAPGEF3O95398 923 aa11.63□□□□□ -0.55
CKS1B-205ENST00000473344 ABCA9Q8IUA7 1624 aa11.63□□□□□ -0.55
CKS1B-205ENST00000473344 ARID4BQ4LE39 1312 aaPredicted RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms