RNA–Protein interactions for RNA: ENST00000473171.5

LSAMP-202, Transcript of limbic system associated membrane protein, humanhuman

TSL 3

Gene LSAMP, Length 640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-202ENST00000473171 CYB5RLQ6IPT4 315 aa14.82□□□□□ -0.04
LSAMP-202ENST00000473171 RSF1Q96T23 1441 aaPredicted RBP14.82□□□□□ -0.04
LSAMP-202ENST00000473171 RBM42Q9BTD8 480 aaKnown RBP14.81□□□□□ -0.04
LSAMP-202ENST00000473171 TOP2AP11388 1531 aaKnown RBP14.81□□□□□ -0.04
LSAMP-202ENST00000473171 IFT140Q96RY7 1462 aa14.79□□□□□ -0.04
LSAMP-202ENST00000473171 TOPBP1Q92547 1522 aa14.71□□□□□ -0.05
LSAMP-202ENST00000473171 ARAP1Q96P48 1450 aa14.7□□□□□ -0.06
LSAMP-202ENST00000473171 EIF4G3O43432 1585 aaKnown RBP14.7□□□□□ -0.06
LSAMP-202ENST00000473171 AQRO60306 1485 aaKnown RBP eCLIP14.69□□□□□ -0.06
LSAMP-202ENST00000473171 CCDC88BA6NC98 1476 aa14.67□□□□□ -0.06
LSAMP-202ENST00000473171 MKRN4PQ13434 485 aaPredicted RBP14.63□□□□□ -0.07
LSAMP-202ENST00000473171 PRDM2Q13029 1718 aa14.61□□□□□ -0.07
LSAMP-202ENST00000473171 DNMBPQ6XZF7 1577 aa14.6□□□□□ -0.07
LSAMP-202ENST00000473171 CHD1O14646 1710 aa14.6□□□□□ -0.07
LSAMP-202ENST00000473171 ABCC8Q09428 1581 aa14.6□□□□□ -0.07
LSAMP-202ENST00000473171 TARBP1Q13395 1621 aaKnown RBP14.57□□□□□ -0.08
LSAMP-202ENST00000473171 POLA1P09884 1462 aaPredicted RBP14.56□□□□□ -0.08
LSAMP-202ENST00000473171 TDRD9Q8NDG6 1382 aaKnown RBP14.55□□□□□ -0.08
LSAMP-202ENST00000473171 RAD54L2Q9Y4B4 1467 aa14.55□□□□□ -0.08
LSAMP-202ENST00000473171 SPDYE2BA6NHP3 402 aa14.52□□□□□ -0.09
LSAMP-202ENST00000473171 SPDYE6P0CI01 402 aa14.52□□□□□ -0.09
LSAMP-202ENST00000473171 SPDYE2Q495Y8 402 aa14.52□□□□□ -0.09
LSAMP-202ENST00000473171 AKT1S1Q96B36 256 aa14.52□□□□□ -0.09
LSAMP-202ENST00000473171 SNAPC4Q5SXM2 1469 aa14.51□□□□□ -0.09
LSAMP-202ENST00000473171 CHMP7Q8WUX9 453 aaPredicted RBP14.49□□□□□ -0.09
LSAMP-202ENST00000473171 SOGA1O94964 1423 aa14.49□□□□□ -0.09
LSAMP-202ENST00000473171 CLASP1Q7Z460 1538 aa14.47□□□□□ -0.09
LSAMP-202ENST00000473171 ZNF692Q9BU19 519 aaPredicted RBP14.46□□□□□ -0.09
LSAMP-202ENST00000473171 FGD5Q6ZNL6 1462 aa14.43□□□□□ -0.1
LSAMP-202ENST00000473171 SYNJ1O43426 1573 aa14.42□□□□□ -0.1
LSAMP-202ENST00000473171 MAGI1Q96QZ7 1491 aaPredicted RBP14.4□□□□□ -0.1
LSAMP-202ENST00000473171 GRIN2BQ13224 1484 aa14.38□□□□□ -0.11
LSAMP-202ENST00000473171 GAPVD1Q14C86 1478 aa14.38□□□□□ -0.11
LSAMP-202ENST00000473171 SYNJ2O15056 1496 aa14.38□□□□□ -0.11
LSAMP-202ENST00000473171 REM2Q8IYK8 340 aaPredicted RBP14.37□□□□□ -0.11
LSAMP-202ENST00000473171 CUX1P39880 1505 aa14.35□□□□□ -0.11
LSAMP-202ENST00000473171 WDR97A6NE52 1622 aa14.33□□□□□ -0.11
LSAMP-202ENST00000473171 SSUH2Q9Y2M2 353 aa14.32□□□□□ -0.12
LSAMP-202ENST00000473171 CHRDL2Q6WN34 429 aa14.28□□□□□ -0.12
LSAMP-202ENST00000473171 ERCC6L2Q5T890 1561 aa14.27□□□□□ -0.12
LSAMP-202ENST00000473171 SPDYE4A6NLX3 237 aa14.25□□□□□ -0.13
LSAMP-202ENST00000473171 PBRM1Q86U86 1689 aa14.23□□□□□ -0.13
LSAMP-202ENST00000473171 GRIN2AQ12879 1464 aa14.21□□□□□ -0.13
LSAMP-202ENST00000473171 PITPNM1O00562 1244 aa14.21□□□□□ -0.13
LSAMP-202ENST00000473171 ABCA10Q8WWZ4 1543 aa14.2□□□□□ -0.14
LSAMP-202ENST00000473171 ABCA5Q8WWZ7 1642 aa14.19□□□□□ -0.14
LSAMP-202ENST00000473171 SPDYE1Q8NFV5 336 aaPredicted RBP14.19□□□□□ -0.14
LSAMP-202ENST00000473171 CLEC11AQ9Y240 323 aa14.19□□□□□ -0.14
LSAMP-202ENST00000473171 CEP170Q5SW79 1584 aa14.18□□□□□ -0.14
LSAMP-202ENST00000473171 NUP160Q12769 1436 aa14.16□□□□□ -0.14
LSAMP-202ENST00000473171 ADAMTS12P58397 1594 aa14.13□□□□□ -0.15
LSAMP-202ENST00000473171 FHAD1B1AJZ9 1412 aa14.1□□□□□ -0.15
LSAMP-202ENST00000473171 WRNQ14191 1432 aaPredicted RBP eCLIP14.1□□□□□ -0.15
LSAMP-202ENST00000473171 PRG4Q92954 1404 aaPredicted RBP14.09□□□□□ -0.15
LSAMP-202ENST00000473171 FAM69CQ0P6D2 419 aa14.09□□□□□ -0.15
LSAMP-202ENST00000473171 SHROOM2Q13796 1616 aa14.08□□□□□ -0.16
LSAMP-202ENST00000473171 JPH4Q96JJ6 628 aa14.05□□□□□ -0.16
LSAMP-202ENST00000473171 KIF13AQ9H1H9 1805 aa14.04□□□□□ -0.16
LSAMP-202ENST00000473171 ABCC10Q5T3U5 1492 aa14.04□□□□□ -0.16
LSAMP-202ENST00000473171 KDM4FA0A1W2PPD8 638 aa14.03□□□□□ -0.16
LSAMP-202ENST00000473171 NPM1P06748 294 aaKnown RBP eCLIP14.02□□□□□ -0.17
LSAMP-202ENST00000473171 PIP4P2Q8N4L2 257 aa14.01□□□□□ -0.17
LSAMP-202ENST00000473171 PRR29P0C7W0 189 aa14□□□□□ -0.17
LSAMP-202ENST00000473171 ERICH3Q5RHP9 1530 aa14□□□□□ -0.17
LSAMP-202ENST00000473171 SUPT5HO00267 1087 aaKnown RBP13.99□□□□□ -0.17
LSAMP-202ENST00000473171 FKBP8Q14318 412 aa13.99□□□□□ -0.17
LSAMP-202ENST00000473171 ILDR1Q86SU0 546 aaPredicted RBP13.99□□□□□ -0.17
LSAMP-202ENST00000473171 DIP2BQ9P265 1576 aa13.97□□□□□ -0.17
LSAMP-202ENST00000473171 FXR2P51116 673 aaKnown RBP eCLIP13.97□□□□□ -0.17
LSAMP-202ENST00000473171 TOP2BQ02880 1626 aa13.97□□□□□ -0.17
LSAMP-202ENST00000473171 MAPKBP1O60336 1514 aa13.96□□□□□ -0.17
LSAMP-202ENST00000473171 STAG3Q9UJ98 1225 aa13.96□□□□□ -0.17
LSAMP-202ENST00000473171 KDM6BO15054 1643 aa13.95□□□□□ -0.18
LSAMP-202ENST00000473171 RUSC2Q8N2Y8 1516 aa13.95□□□□□ -0.18
LSAMP-202ENST00000473171 BIVM-ERCC5R4GMW8 1640 aa13.94□□□□□ -0.18
LSAMP-202ENST00000473171 ADCY10Q96PN6 1610 aa13.93□□□□□ -0.18
LSAMP-202ENST00000473171 TTBK1Q5TCY1 1321 aaPredicted RBP13.91□□□□□ -0.18
LSAMP-202ENST00000473171 PRKAR2AP13861 404 aaKnown RBP13.89□□□□□ -0.19
LSAMP-202ENST00000473171 PROM2Q8N271 834 aa13.85□□□□□ -0.19
LSAMP-202ENST00000473171 KIAA0586Q9BVV6 1533 aa13.84□□□□□ -0.19
LSAMP-202ENST00000473171 TSPOAP1O95153 1857 aa13.83□□□□□ -0.2
LSAMP-202ENST00000473171 PTPRGP23470 1445 aa13.82□□□□□ -0.2
LSAMP-202ENST00000473171 ADGRL1O94910 1474 aa13.82□□□□□ -0.2
LSAMP-202ENST00000473171 CHADLQ6NUI6 762 aa13.81□□□□□ -0.2
LSAMP-202ENST00000473171 IGF1RP08069 1367 aa13.8□□□□□ -0.2
LSAMP-202ENST00000473171 ASXL2Q76L83 1435 aa13.79□□□□□ -0.2
LSAMP-202ENST00000473171 ABCC2Q92887 1545 aa13.77□□□□□ -0.21
LSAMP-202ENST00000473171 TNIKQ9UKE5 1360 aa13.75□□□□□ -0.21
LSAMP-202ENST00000473171 PLB1Q6P1J6 1458 aa13.74□□□□□ -0.21
LSAMP-202ENST00000473171 COL17A1Q9UMD9 1497 aaPredicted RBP13.74□□□□□ -0.21
LSAMP-202ENST00000473171 KIF27Q86VH2 1401 aa13.73□□□□□ -0.21
LSAMP-202ENST00000473171 HECW2Q9P2P5 1572 aa13.73□□□□□ -0.21
LSAMP-202ENST00000473171 CARMIL2Q6F5E8 1435 aa13.73□□□□□ -0.21
LSAMP-202ENST00000473171 HAX1O00165 279 aa13.72□□□□□ -0.21
LSAMP-202ENST00000473171 PPRC1Q5VV67 1664 aaKnown RBP13.72□□□□□ -0.21
LSAMP-202ENST00000473171 GLI2P10070 1586 aa13.71□□□□□ -0.22
LSAMP-202ENST00000473171 CARMIL1Q5VZK9 1371 aa13.7□□□□□ -0.22
LSAMP-202ENST00000473171 CUL7Q14999 1698 aa13.69□□□□□ -0.22
LSAMP-202ENST00000473171 SP7Q8TDD2 431 aaPredicted RBP13.69□□□□□ -0.22
LSAMP-202ENST00000473171 UACAQ9BZF9 1416 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms