RNA–Protein interactions for RNA: ENST00000473171.5

LSAMP-202, Transcript of limbic system associated membrane protein, humanhuman

TSL 3

Gene LSAMP, Length 640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-202ENST00000473171 AEBP2Q6ZN18 517 aaPredicted RBP25.99■■□□□ 1.75
LSAMP-202ENST00000473171 CHIC1Q5VXU3 224 aa25.14■■□□□ 1.62
LSAMP-202ENST00000473171 SENP3Q9H4L4 574 aaPredicted RBP22.2■■□□□ 1.14
LSAMP-202ENST00000473171 PHF23Q9BUL5 403 aaPredicted RBP22.03■■□□□ 1.12
LSAMP-202ENST00000473171 FOXD1Q16676 465 aa20.58■□□□□ 0.89
LSAMP-202ENST00000473171 PLPPR3Q6T4P5 718 aa20.34■□□□□ 0.85
LSAMP-202ENST00000473171 NISCHQ9Y2I1 1504 aa19.76■□□□□ 0.75
LSAMP-202ENST00000473171 POTEDQ86YR6 584 aa19.6■□□□□ 0.73
LSAMP-202ENST00000473171 ADRA2BP18089 450 aa19.56■□□□□ 0.72
LSAMP-202ENST00000473171 PPP6R1Q9UPN7 881 aa19.55■□□□□ 0.72
LSAMP-202ENST00000473171 PIAS4Q8N2W9 510 aaPredicted RBP19.41■□□□□ 0.7
LSAMP-202ENST00000473171 MSH5O43196 834 aa19.16■□□□□ 0.66
LSAMP-202ENST00000473171 ABCC9O60706 1549 aa18.3■□□□□ 0.52
LSAMP-202ENST00000473171 SCAF1Q9H7N4 1312 aaKnown RBP17.98■□□□□ 0.47
LSAMP-202ENST00000473171 PPP4R3CPQ6ZMV5 832 aa17.86■□□□□ 0.45
LSAMP-202ENST00000473171 MAPK8IP2Q13387 824 aaPredicted RBP17.82■□□□□ 0.44
LSAMP-202ENST00000473171 CCDC180Q9P1Z9 1646 aa17.77■□□□□ 0.44
LSAMP-202ENST00000473171 DMRT2Q9Y5R5 561 aa17.63■□□□□ 0.41
LSAMP-202ENST00000473171 DNAJC5BQ9UF47 199 aa17.5■□□□□ 0.39
LSAMP-202ENST00000473171 CNKSR2Q8WXI2 1034 aa17.44■□□□□ 0.38
LSAMP-202ENST00000473171 NCBP3Q53F19 620 aaKnown RBP17.37■□□□□ 0.37
LSAMP-202ENST00000473171 RB1CC1Q8TDY2 1594 aa17.15■□□□□ 0.34
LSAMP-202ENST00000473171 RNF216Q9NWF9 866 aaPredicted RBP17.15■□□□□ 0.34
LSAMP-202ENST00000473171 HOXD11P31277 338 aaPredicted RBP17.13■□□□□ 0.33
LSAMP-202ENST00000473171 KCNA4P22459 653 aa17.09■□□□□ 0.33
LSAMP-202ENST00000473171 DCAF8L1A6NGE4 600 aa17.03■□□□□ 0.32
LSAMP-202ENST00000473171 NPM3O75607 178 aaKnown RBP17.03■□□□□ 0.32
LSAMP-202ENST00000473171 PABPN1Q86U42 306 aaKnown RBP eCLIP17.03■□□□□ 0.32
LSAMP-202ENST00000473171 DCAF8L2P0C7V8 631 aa16.96■□□□□ 0.31
LSAMP-202ENST00000473171 NACADO15069 1562 aa16.94■□□□□ 0.3
LSAMP-202ENST00000473171 BICRAQ9NZM4 1560 aa16.68■□□□□ 0.26
LSAMP-202ENST00000473171 UNC13AQ9UPW8 1703 aa16.67■□□□□ 0.26
LSAMP-202ENST00000473171 MYO15BQ96JP2 1530 aa16.55■□□□□ 0.24
LSAMP-202ENST00000473171 CECR2Q9BXF3 1484 aa16.49■□□□□ 0.23
LSAMP-202ENST00000473171 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.44■□□□□ 0.22
LSAMP-202ENST00000473171 CC2D2AQ9P2K1 1620 aa16.44■□□□□ 0.22
LSAMP-202ENST00000473171 SHROOM4Q9ULL8 1493 aa16.37■□□□□ 0.21
LSAMP-202ENST00000473171 RNF39Q9H2S5 420 aa16.33■□□□□ 0.2
LSAMP-202ENST00000473171 EIF4G1Q04637 1599 aaKnown RBP16.32■□□□□ 0.2
LSAMP-202ENST00000473171 SCRIBQ14160 1630 aa16.31■□□□□ 0.2
LSAMP-202ENST00000473171 ZCCHC6Q5VYS8 1495 aaKnown RBP16.3■□□□□ 0.2
LSAMP-202ENST00000473171 CACNB1Q02641 598 aaPredicted RBP16.29■□□□□ 0.2
LSAMP-202ENST00000473171 SLC4A1APQ9BWU0 796 aaKnown RBP16.28■□□□□ 0.2
LSAMP-202ENST00000473171 DNAJC5Q9H3Z4 198 aa16.27■□□□□ 0.2
LSAMP-202ENST00000473171 DCAF1Q9Y4B6 1507 aa16.23■□□□□ 0.19
LSAMP-202ENST00000473171 C1QBPQ07021 282 aaKnown RBP16.16■□□□□ 0.18
LSAMP-202ENST00000473171 SLC4A2P04920 1241 aa16.12■□□□□ 0.17
LSAMP-202ENST00000473171 U3KPZ7 1027 aaPredicted RBP16.05■□□□□ 0.16
LSAMP-202ENST00000473171 FOXD4L1Q9NU39 408 aa15.85■□□□□ 0.13
LSAMP-202ENST00000473171 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.84■□□□□ 0.13
LSAMP-202ENST00000473171 HNRNPUL2Q1KMD3 747 aaKnown RBP15.84■□□□□ 0.13
LSAMP-202ENST00000473171 CUX2O14529 1486 aa15.84■□□□□ 0.13
LSAMP-202ENST00000473171 ERCC6Q03468 1493 aa15.82■□□□□ 0.12
LSAMP-202ENST00000473171 MYCNP04198 464 aaPredicted RBP15.79■□□□□ 0.12
LSAMP-202ENST00000473171 APLP2Q06481 763 aa15.77■□□□□ 0.12
LSAMP-202ENST00000473171 CAPN15O75808 1086 aa15.74■□□□□ 0.11
LSAMP-202ENST00000473171 SAMD1Q6SPF0 538 aaPredicted RBP15.74■□□□□ 0.11
LSAMP-202ENST00000473171 SPINK5Q9NQ38 1064 aaPredicted RBP15.7■□□□□ 0.1
LSAMP-202ENST00000473171 NCAPD3P42695 1498 aa15.68■□□□□ 0.1
LSAMP-202ENST00000473171 ZBTB22O15209 634 aa15.67■□□□□ 0.1
LSAMP-202ENST00000473171 NESP48681 1621 aa15.61■□□□□ 0.09
LSAMP-202ENST00000473171 ATAD2BQ9ULI0 1458 aa15.61■□□□□ 0.09
LSAMP-202ENST00000473171 TRHP20396 242 aaPredicted RBP15.59■□□□□ 0.09
LSAMP-202ENST00000473171 ZNF219Q9P2Y4 722 aaPredicted RBP15.55■□□□□ 0.08
LSAMP-202ENST00000473171 TRIM41Q8WV44 630 aa15.51■□□□□ 0.07
LSAMP-202ENST00000473171 HMGXB3Q12766 1538 aa15.51■□□□□ 0.07
LSAMP-202ENST00000473171 SMARCA2P51531 1590 aa15.5■□□□□ 0.07
LSAMP-202ENST00000473171 EHMT2Q96KQ7 1210 aa15.5■□□□□ 0.07
LSAMP-202ENST00000473171 SMARCA4P51532 1647 aa15.46■□□□□ 0.07
LSAMP-202ENST00000473171 THOC2Q8NI27 1593 aaKnown RBP15.45■□□□□ 0.06
LSAMP-202ENST00000473171 DSG3P32926 999 aa15.45■□□□□ 0.06
LSAMP-202ENST00000473171 BAZ1BQ9UIG0 1483 aaKnown RBP15.45■□□□□ 0.06
LSAMP-202ENST00000473171 ABCB7O75027 752 aa15.38■□□□□ 0.05
LSAMP-202ENST00000473171 CSRNP3Q8WYN3 585 aa15.37■□□□□ 0.05
LSAMP-202ENST00000473171 LAMC3Q9Y6N6 1575 aa15.35■□□□□ 0.05
LSAMP-202ENST00000473171 BAZ1AQ9NRL2 1556 aaPredicted RBP15.34■□□□□ 0.05
LSAMP-202ENST00000473171 ATF5Q9Y2D1 282 aaPredicted RBP15.32■□□□□ 0.04
LSAMP-202ENST00000473171 PDS5BQ9NTI5 1447 aa15.32■□□□□ 0.04
LSAMP-202ENST00000473171 ATXN8OSP0DMR3 200 aa15.3■□□□□ 0.04
LSAMP-202ENST00000473171 KIF21AQ7Z4S6 1674 aa15.29■□□□□ 0.04
LSAMP-202ENST00000473171 PEG3Q9GZU2 1588 aa15.28■□□□□ 0.04
LSAMP-202ENST00000473171 MROH2BQ7Z745 1585 aa15.26■□□□□ 0.03
LSAMP-202ENST00000473171 POLA2Q14181 598 aa15.23■□□□□ 0.03
LSAMP-202ENST00000473171 MRC2Q9UBG0 1479 aa15.22■□□□□ 0.03
LSAMP-202ENST00000473171 CADPSQ9ULU8 1353 aa15.22■□□□□ 0.03
LSAMP-202ENST00000473171 WDR62O43379 1518 aa15.17■□□□□ 0.02
LSAMP-202ENST00000473171 POTEHQ6S545 545 aa15.16■□□□□ 0.02
LSAMP-202ENST00000473171 CEP164Q9UPV0 1460 aa15.1■□□□□ 0.01
LSAMP-202ENST00000473171 OSCARQ8IYS5 282 aa15.1■□□□□ 0.01
LSAMP-202ENST00000473171 FANCD2Q9BXW9 1451 aa15.06■□□□□ 0
LSAMP-202ENST00000473171 WIZO95785 1651 aa15.02□□□□□ -0.01
LSAMP-202ENST00000473171 ZBTB12Q9Y330 459 aaPredicted RBP14.98□□□□□ -0.01
LSAMP-202ENST00000473171 URB2Q14146 1524 aaKnown RBP14.96□□□□□ -0.02
LSAMP-202ENST00000473171 CFTRP13569 1480 aa14.95□□□□□ -0.02
LSAMP-202ENST00000473171 RIMBP3CA6NJZ7 1639 aa14.9□□□□□ -0.02
LSAMP-202ENST00000473171 RIMBP3BA6NNM3 1639 aa14.9□□□□□ -0.02
LSAMP-202ENST00000473171 RIMBP3Q9UFD9 1639 aa14.9□□□□□ -0.02
LSAMP-202ENST00000473171 ARHGEF11O15085 1522 aa14.86□□□□□ -0.03
LSAMP-202ENST00000473171 ZNF608Q9ULD9 1512 aaPredicted RBP14.86□□□□□ -0.03
LSAMP-202ENST00000473171 FBLN2P98095 1184 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms