RNA–Protein interactions for RNA: ENST00000470357.1

VAMP3-202, Transcript of vesicle associated membrane protein 3, humanhuman

TSL 3 BASIC

Gene VAMP3, Length 954 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-202ENST00000470357 CHRDL2Q6WN34 429 aa11.73□□□□□ -0.53
VAMP3-202ENST00000470357 RSF1Q96T23 1441 aaPredicted RBP11.7□□□□□ -0.54
VAMP3-202ENST00000470357 MROH2BQ7Z745 1585 aa11.7□□□□□ -0.54
VAMP3-202ENST00000470357 CADPSQ9ULU8 1353 aa11.68□□□□□ -0.54
VAMP3-202ENST00000470357 SUPT5HO00267 1087 aaKnown RBP11.67□□□□□ -0.54
VAMP3-202ENST00000470357 MRC2Q9UBG0 1479 aa11.66□□□□□ -0.54
VAMP3-202ENST00000470357 WDR62O43379 1518 aa11.65□□□□□ -0.54
VAMP3-202ENST00000470357 STAG3Q9UJ98 1225 aa11.64□□□□□ -0.55
VAMP3-202ENST00000470357 PRR29P0C7W0 189 aa11.63□□□□□ -0.55
VAMP3-202ENST00000470357 WIZO95785 1651 aa11.62□□□□□ -0.55
VAMP3-202ENST00000470357 FXR2P51116 673 aaKnown RBP eCLIP11.57□□□□□ -0.56
VAMP3-202ENST00000470357 PIP4P2Q8N4L2 257 aa11.57□□□□□ -0.56
VAMP3-202ENST00000470357 TOP2AP11388 1531 aaKnown RBP11.55□□□□□ -0.56
VAMP3-202ENST00000470357 CEP164Q9UPV0 1460 aa11.53□□□□□ -0.56
VAMP3-202ENST00000470357 FANCD2Q9BXW9 1451 aa11.52□□□□□ -0.56
VAMP3-202ENST00000470357 POTEHQ6S545 545 aa11.5□□□□□ -0.57
VAMP3-202ENST00000470357 CFTRP13569 1480 aa11.5□□□□□ -0.57
VAMP3-202ENST00000470357 PRKAR2AP13861 404 aaKnown RBP11.49□□□□□ -0.57
VAMP3-202ENST00000470357 CHADLQ6NUI6 762 aa11.49□□□□□ -0.57
VAMP3-202ENST00000470357 FBXO3Q9UK99 471 aa11.49□□□□□ -0.57
VAMP3-202ENST00000470357 URB2Q14146 1524 aaKnown RBP11.47□□□□□ -0.57
VAMP3-202ENST00000470357 CREBZFQ9NS37 354 aa11.45□□□□□ -0.58
VAMP3-202ENST00000470357 RIMBP3CA6NJZ7 1639 aa11.45□□□□□ -0.58
VAMP3-202ENST00000470357 RIMBP3BA6NNM3 1639 aa11.45□□□□□ -0.58
VAMP3-202ENST00000470357 RIMBP3Q9UFD9 1639 aa11.45□□□□□ -0.58
VAMP3-202ENST00000470357 MIER1Q8N108 512 aa11.43□□□□□ -0.58
VAMP3-202ENST00000470357 ARHGEF11O15085 1522 aa11.4□□□□□ -0.59
VAMP3-202ENST00000470357 ZNF608Q9ULD9 1512 aaPredicted RBP11.39□□□□□ -0.59
VAMP3-202ENST00000470357 PLCD3Q8N3E9 789 aa11.38□□□□□ -0.59
VAMP3-202ENST00000470357 CCDC88BA6NC98 1476 aa11.37□□□□□ -0.59
VAMP3-202ENST00000470357 VASPP50552 380 aaPredicted RBP11.35□□□□□ -0.59
VAMP3-202ENST00000470357 CYB5RLQ6IPT4 315 aa11.35□□□□□ -0.59
VAMP3-202ENST00000470357 FARP1Q9Y4F1 1045 aaPredicted RBP11.35□□□□□ -0.59
VAMP3-202ENST00000470357 IFT140Q96RY7 1462 aa11.34□□□□□ -0.59
VAMP3-202ENST00000470357 PLEKHG5O94827 1062 aa11.32□□□□□ -0.6
VAMP3-202ENST00000470357 MNX1P50219 401 aaPredicted RBP11.3□□□□□ -0.6
VAMP3-202ENST00000470357 ARAP1Q96P48 1450 aa11.29□□□□□ -0.6
VAMP3-202ENST00000470357 TOPBP1Q92547 1522 aa11.28□□□□□ -0.6
VAMP3-202ENST00000470357 PRDM2Q13029 1718 aa11.26□□□□□ -0.61
VAMP3-202ENST00000470357 HAX1O00165 279 aa11.26□□□□□ -0.61
VAMP3-202ENST00000470357 EIF4G3O43432 1585 aaKnown RBP11.25□□□□□ -0.61
VAMP3-202ENST00000470357 AQRO60306 1485 aaKnown RBP eCLIP11.25□□□□□ -0.618e-8■■■■■ 33.7
VAMP3-202ENST00000470357 NPM1P06748 294 aaKnown RBP eCLIP11.24□□□□□ -0.61
VAMP3-202ENST00000470357 KLHL34Q8N239 644 aa11.23□□□□□ -0.61
VAMP3-202ENST00000470357 IFNLR1Q8IU57 520 aaPredicted RBP11.21□□□□□ -0.61
VAMP3-202ENST00000470357 TARBP1Q13395 1621 aaKnown RBP11.2□□□□□ -0.62
VAMP3-202ENST00000470357 ABCC8Q09428 1581 aa11.2□□□□□ -0.62
VAMP3-202ENST00000470357 ZBTB47Q9UFB7 747 aaPredicted RBP11.2□□□□□ -0.62
VAMP3-202ENST00000470357 CHD1O14646 1710 aa11.2□□□□□ -0.62
VAMP3-202ENST00000470357 DNMBPQ6XZF7 1577 aa11.19□□□□□ -0.62
VAMP3-202ENST00000470357 C19orf67A6NJJ6 358 aa11.18□□□□□ -0.62
VAMP3-202ENST00000470357 EVX2Q03828 476 aa11.17□□□□□ -0.62
VAMP3-202ENST00000470357 POLA1P09884 1462 aaPredicted RBP11.15□□□□□ -0.62
VAMP3-202ENST00000470357 CD44P16070 742 aaKnown RBP11.15□□□□□ -0.62
VAMP3-202ENST00000470357 CLASP1Q7Z460 1538 aa11.13□□□□□ -0.63
VAMP3-202ENST00000470357 RAD54L2Q9Y4B4 1467 aa11.12□□□□□ -0.63
VAMP3-202ENST00000470357 NUBP1P53384 320 aa11.12□□□□□ -0.63
VAMP3-202ENST00000470357 TDRD9Q8NDG6 1382 aaKnown RBP11.12□□□□□ -0.63
VAMP3-202ENST00000470357 RASEFQ8IZ41 740 aa11.1□□□□□ -0.63
VAMP3-202ENST00000470357 SOGA1O94964 1423 aa11.09□□□□□ -0.63
VAMP3-202ENST00000470357 TSPYL2Q9H2G4 693 aaPredicted RBP11.09□□□□□ -0.63
VAMP3-202ENST00000470357 ZRANB1Q9UGI0 708 aa11.09□□□□□ -0.63
VAMP3-202ENST00000470357 SNAPC4Q5SXM2 1469 aa11.08□□□□□ -0.64
VAMP3-202ENST00000470357 SPOCK2Q92563 424 aa11.08□□□□□ -0.64
VAMP3-202ENST00000470357 PAK3O75914 559 aaPredicted RBP11.07□□□□□ -0.64
VAMP3-202ENST00000470357 CHMP7Q8WUX9 453 aaPredicted RBP11.06□□□□□ -0.64
VAMP3-202ENST00000470357 WRNQ14191 1432 aaPredicted RBP eCLIP11.06□□□□□ -0.64
VAMP3-202ENST00000470357 SYNJ1O43426 1573 aa11.04□□□□□ -0.64
VAMP3-202ENST00000470357 MAGI1Q96QZ7 1491 aaPredicted RBP11.04□□□□□ -0.64
VAMP3-202ENST00000470357 BIVM-ERCC5R4GMW8 1640 aa11.03□□□□□ -0.64
VAMP3-202ENST00000470357 DCAF8Q5TAQ9 597 aa11.03□□□□□ -0.64
VAMP3-202ENST00000470357 WDR97A6NE52 1622 aa11.02□□□□□ -0.64
VAMP3-202ENST00000470357 GAPVD1Q14C86 1478 aa11.02□□□□□ -0.65
VAMP3-202ENST00000470357 FGD5Q6ZNL6 1462 aa11.02□□□□□ -0.65
VAMP3-202ENST00000470357 TOP2BQ02880 1626 aa11.02□□□□□ -0.65
VAMP3-202ENST00000470357 SYNJ2O15056 1496 aa11.01□□□□□ -0.65
VAMP3-202ENST00000470357 GRIN2BQ13224 1484 aa11.01□□□□□ -0.65
VAMP3-202ENST00000470357 FAM212AQ96EL1 285 aa11□□□□□ -0.65
VAMP3-202ENST00000470357 SP7Q8TDD2 431 aaPredicted RBP10.99□□□□□ -0.65
VAMP3-202ENST00000470357 CUX1P39880 1505 aa10.99□□□□□ -0.65
VAMP3-202ENST00000470357 ZNF579Q8NAF0 562 aaKnown RBP10.97□□□□□ -0.65
VAMP3-202ENST00000470357 PHF12Q96QT6 1004 aa10.97□□□□□ -0.65
VAMP3-202ENST00000470357 CCDC61Q9Y6R9 512 aa10.97□□□□□ -0.65
VAMP3-202ENST00000470357 CIZ1Q9ULV3 898 aaPredicted RBP10.96□□□□□ -0.65
VAMP3-202ENST00000470357 ERCC6L2Q5T890 1561 aa10.95□□□□□ -0.66
VAMP3-202ENST00000470357 GSE1Q14687 1217 aa10.94□□□□□ -0.66
VAMP3-202ENST00000470357 GABBR2O75899 941 aa10.92□□□□□ -0.66
VAMP3-202ENST00000470357 EEA1Q15075 1411 aa10.91□□□□□ -0.66
VAMP3-202ENST00000470357 ABCA10Q8WWZ4 1543 aa10.9□□□□□ -0.66
VAMP3-202ENST00000470357 PBRM1Q86U86 1689 aa10.89□□□□□ -0.67
VAMP3-202ENST00000470357 ABCA5Q8WWZ7 1642 aa10.89□□□□□ -0.67
VAMP3-202ENST00000470357 PYGBP11216 843 aa10.89□□□□□ -0.67
VAMP3-202ENST00000470357 NUP160Q12769 1436 aa10.88□□□□□ -0.67
VAMP3-202ENST00000470357 KIF12Q96FN5 646 aa10.88□□□□□ -0.67
VAMP3-202ENST00000470357 GRIN2AQ12879 1464 aa10.87□□□□□ -0.67
VAMP3-202ENST00000470357 CEP170Q5SW79 1584 aa10.87□□□□□ -0.67
VAMP3-202ENST00000470357 MAP3K13O43283 966 aa10.86□□□□□ -0.67
VAMP3-202ENST00000470357 CLCN6P51797 869 aa10.85□□□□□ -0.67
VAMP3-202ENST00000470357 SHROOM2Q13796 1616 aa10.84□□□□□ -0.67
VAMP3-202ENST00000470357 GALR2O43603 387 aaPredicted RBP10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms