RNA–Protein interactions for RNA: ENST00000470357.1

VAMP3-202, Transcript of vesicle associated membrane protein 3, humanhuman

TSL 3 BASIC

Gene VAMP3, Length 954 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-202ENST00000470357 AEBP2Q6ZN18 517 aaPredicted RBP21.62■■□□□ 1.05
VAMP3-202ENST00000470357 CHIC1Q5VXU3 224 aa20.97■□□□□ 0.95
VAMP3-202ENST00000470357 PHF23Q9BUL5 403 aaPredicted RBP18.47■□□□□ 0.55
VAMP3-202ENST00000470357 SENP3Q9H4L4 574 aaPredicted RBP18.31■□□□□ 0.52
VAMP3-202ENST00000470357 FOXD1Q16676 465 aa17.05■□□□□ 0.32
VAMP3-202ENST00000470357 PLPPR3Q6T4P5 718 aa16.97■□□□□ 0.31
VAMP3-202ENST00000470357 PPP6R1Q9UPN7 881 aa16.35■□□□□ 0.21
VAMP3-202ENST00000470357 ADRA2BP18089 450 aa16.34■□□□□ 0.21
VAMP3-202ENST00000470357 PIAS4Q8N2W9 510 aaPredicted RBP16.04■□□□□ 0.16
VAMP3-202ENST00000470357 MSH5O43196 834 aa15.72■□□□□ 0.11
VAMP3-202ENST00000470357 NISCHQ9Y2I1 1504 aa15.22■□□□□ 0.03
VAMP3-202ENST00000470357 PPP4R3CPQ6ZMV5 832 aa14.97□□□□□ -0.01
VAMP3-202ENST00000470357 SCAF1Q9H7N4 1312 aaKnown RBP14.89□□□□□ -0.03
VAMP3-202ENST00000470357 MAPK8IP2Q13387 824 aaPredicted RBP14.87□□□□□ -0.03
VAMP3-202ENST00000470357 DMRT2Q9Y5R5 561 aa14.6□□□□□ -0.07
VAMP3-202ENST00000470357 POTEDQ86YR6 584 aa14.55□□□□□ -0.08
VAMP3-202ENST00000470357 CNKSR2Q8WXI2 1034 aa14.55□□□□□ -0.08
VAMP3-202ENST00000470357 NCBP3Q53F19 620 aaKnown RBP14.52□□□□□ -0.09
VAMP3-202ENST00000470357 KCNA4P22459 653 aa14.51□□□□□ -0.09
VAMP3-202ENST00000470357 NPM3O75607 178 aaKnown RBP14.32□□□□□ -0.12
VAMP3-202ENST00000470357 RNF216Q9NWF9 866 aaPredicted RBP14.28□□□□□ -0.12
VAMP3-202ENST00000470357 HOXD11P31277 338 aaPredicted RBP14.26□□□□□ -0.13
VAMP3-202ENST00000470357 DCAF8L1A6NGE4 600 aa14.04□□□□□ -0.16
VAMP3-202ENST00000470357 ABCC9O60706 1549 aa14□□□□□ -0.17
VAMP3-202ENST00000470357 DNAJC5BQ9UF47 199 aa13.85□□□□□ -0.19
VAMP3-202ENST00000470357 SLC4A1APQ9BWU0 796 aaKnown RBP13.78□□□□□ -0.2
VAMP3-202ENST00000470357 CCDC180Q9P1Z9 1646 aa13.67□□□□□ -0.22
VAMP3-202ENST00000470357 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.63□□□□□ -0.23
VAMP3-202ENST00000470357 SLC4A2P04920 1241 aa13.57□□□□□ -0.24
VAMP3-202ENST00000470357 RNF39Q9H2S5 420 aa13.48□□□□□ -0.25
VAMP3-202ENST00000470357 U3KPZ7 1027 aaPredicted RBP13.37□□□□□ -0.27
VAMP3-202ENST00000470357 FOXD4L1Q9NU39 408 aa13.35□□□□□ -0.27
VAMP3-202ENST00000470357 ZBTB22O15209 634 aa13.34□□□□□ -0.27
VAMP3-202ENST00000470357 C1QBPQ07021 282 aaKnown RBP13.3□□□□□ -0.28
VAMP3-202ENST00000470357 EHMT2Q96KQ7 1210 aa13.29□□□□□ -0.28
VAMP3-202ENST00000470357 CACNB1Q02641 598 aaPredicted RBP13.25□□□□□ -0.29
VAMP3-202ENST00000470357 MYCNP04198 464 aaPredicted RBP13.21□□□□□ -0.29
VAMP3-202ENST00000470357 CSRNP3Q8WYN3 585 aa13.18□□□□□ -0.3
VAMP3-202ENST00000470357 RB1CC1Q8TDY2 1594 aa13.16□□□□□ -0.3
VAMP3-202ENST00000470357 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.13□□□□□ -0.31
VAMP3-202ENST00000470357 HNRNPUL2Q1KMD3 747 aaKnown RBP13.13□□□□□ -0.31
VAMP3-202ENST00000470357 SAMD1Q6SPF0 538 aaPredicted RBP13.09□□□□□ -0.31
VAMP3-202ENST00000470357 SPINK5Q9NQ38 1064 aaPredicted RBP13.06□□□□□ -0.32
VAMP3-202ENST00000470357 NACADO15069 1562 aa13.03□□□□□ -0.32
VAMP3-202ENST00000470357 PABPN1Q86U42 306 aaKnown RBP eCLIP13.02□□□□□ -0.33
VAMP3-202ENST00000470357 CAPN15O75808 1086 aa13.01□□□□□ -0.33
VAMP3-202ENST00000470357 APLP2Q06481 763 aa13.01□□□□□ -0.33
VAMP3-202ENST00000470357 TRHP20396 242 aaPredicted RBP12.94□□□□□ -0.34
VAMP3-202ENST00000470357 ATF5Q9Y2D1 282 aaPredicted RBP12.93□□□□□ -0.34
VAMP3-202ENST00000470357 DCAF8L2P0C7V8 631 aa12.88□□□□□ -0.35
VAMP3-202ENST00000470357 ATXN8OSP0DMR3 200 aa12.87□□□□□ -0.35
VAMP3-202ENST00000470357 BICRAQ9NZM4 1560 aa12.86□□□□□ -0.35
VAMP3-202ENST00000470357 UNC13AQ9UPW8 1703 aa12.86□□□□□ -0.35
VAMP3-202ENST00000470357 ZNF219Q9P2Y4 722 aaPredicted RBP12.86□□□□□ -0.35
VAMP3-202ENST00000470357 DSG3P32926 999 aa12.8□□□□□ -0.36
VAMP3-202ENST00000470357 MYO15BQ96JP2 1530 aa12.79□□□□□ -0.36
VAMP3-202ENST00000470357 ABCB7O75027 752 aa12.77□□□□□ -0.37
VAMP3-202ENST00000470357 ZCCHC6Q5VYS8 1495 aaKnown RBP12.76□□□□□ -0.37
VAMP3-202ENST00000470357 POLA2Q14181 598 aa12.7□□□□□ -0.38
VAMP3-202ENST00000470357 DCAF1Q9Y4B6 1507 aa12.66□□□□□ -0.38
VAMP3-202ENST00000470357 CECR2Q9BXF3 1484 aa12.65□□□□□ -0.38
VAMP3-202ENST00000470357 CC2D2AQ9P2K1 1620 aa12.62□□□□□ -0.39
VAMP3-202ENST00000470357 SHROOM4Q9ULL8 1493 aa12.6□□□□□ -0.39
VAMP3-202ENST00000470357 DNAJC5Q9H3Z4 198 aa12.58□□□□□ -0.4
VAMP3-202ENST00000470357 EIF4G1Q04637 1599 aaKnown RBP12.53□□□□□ -0.4
VAMP3-202ENST00000470357 SCRIBQ14160 1630 aa12.44□□□□□ -0.42
VAMP3-202ENST00000470357 ZBTB12Q9Y330 459 aaPredicted RBP12.4□□□□□ -0.42
VAMP3-202ENST00000470357 FBLN2P98095 1184 aa12.35□□□□□ -0.43
VAMP3-202ENST00000470357 MKRN4PQ13434 485 aaPredicted RBP12.34□□□□□ -0.43
VAMP3-202ENST00000470357 OSCARQ8IYS5 282 aa12.24□□□□□ -0.45
VAMP3-202ENST00000470357 CUX2O14529 1486 aa12.18□□□□□ -0.46
VAMP3-202ENST00000470357 RBM42Q9BTD8 480 aaKnown RBP12.16□□□□□ -0.46
VAMP3-202ENST00000470357 SPDYE2BA6NHP3 402 aa12.08□□□□□ -0.48
VAMP3-202ENST00000470357 SPDYE6P0CI01 402 aa12.08□□□□□ -0.48
VAMP3-202ENST00000470357 SPDYE2Q495Y8 402 aa12.08□□□□□ -0.48
VAMP3-202ENST00000470357 NCAPD3P42695 1498 aa12.08□□□□□ -0.48
VAMP3-202ENST00000470357 ZNF692Q9BU19 519 aaPredicted RBP12.06□□□□□ -0.48
VAMP3-202ENST00000470357 ERCC6Q03468 1493 aa12.06□□□□□ -0.48
VAMP3-202ENST00000470357 AKT1S1Q96B36 256 aa12.01□□□□□ -0.49
VAMP3-202ENST00000470357 SPDYE4A6NLX3 237 aa12□□□□□ -0.49
VAMP3-202ENST00000470357 ATAD2BQ9ULI0 1458 aa11.99□□□□□ -0.49
VAMP3-202ENST00000470357 SSUH2Q9Y2M2 353 aa11.97□□□□□ -0.49
VAMP3-202ENST00000470357 NESP48681 1621 aa11.97□□□□□ -0.49
VAMP3-202ENST00000470357 FKBP8Q14318 412 aa11.92□□□□□ -0.5
VAMP3-202ENST00000470357 REM2Q8IYK8 340 aaPredicted RBP11.92□□□□□ -0.5
VAMP3-202ENST00000470357 HMGXB3Q12766 1538 aa11.91□□□□□ -0.5
VAMP3-202ENST00000470357 SMARCA2P51531 1590 aa11.88□□□□□ -0.51
VAMP3-202ENST00000470357 THOC2Q8NI27 1593 aaKnown RBP11.88□□□□□ -0.51
VAMP3-202ENST00000470357 SMARCA4P51532 1647 aa11.86□□□□□ -0.51
VAMP3-202ENST00000470357 TRIM41Q8WV44 630 aa11.83□□□□□ -0.52
VAMP3-202ENST00000470357 BAZ1AQ9NRL2 1556 aaPredicted RBP11.81□□□□□ -0.52
VAMP3-202ENST00000470357 BAZ1BQ9UIG0 1483 aaKnown RBP11.8□□□□□ -0.52
VAMP3-202ENST00000470357 PEG3Q9GZU2 1588 aa11.79□□□□□ -0.52
VAMP3-202ENST00000470357 LAMC3Q9Y6N6 1575 aa11.79□□□□□ -0.52
VAMP3-202ENST00000470357 PITPNM1O00562 1244 aa11.77□□□□□ -0.53
VAMP3-202ENST00000470357 CLEC11AQ9Y240 323 aa11.77□□□□□ -0.53
VAMP3-202ENST00000470357 SPDYE1Q8NFV5 336 aaPredicted RBP11.76□□□□□ -0.53
VAMP3-202ENST00000470357 KIF21AQ7Z4S6 1674 aa11.75□□□□□ -0.53
VAMP3-202ENST00000470357 PROM2Q8N271 834 aa11.74□□□□□ -0.53
VAMP3-202ENST00000470357 PDS5BQ9NTI5 1447 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms