RNA–Protein interactions for RNA: ENST00000469163.1

NUP50-214, Transcript of nucleoporin 50, humanhuman

TSL 2

Gene NUP50, Length 3,507 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-214ENST00000469163 CEP164Q9UPV0 1460 aa14.3□□□□□ -0.12
NUP50-214ENST00000469163 AQRO60306 1485 aaKnown RBP eCLIP14.29□□□□□ -0.12
NUP50-214ENST00000469163 SUPT16HQ9Y5B9 1047 aaKnown RBP14.29□□□□□ -0.12
NUP50-214ENST00000469163 CARMIL1Q5VZK9 1371 aa14.29□□□□□ -0.12
NUP50-214ENST00000469163 FGD5Q6ZNL6 1462 aa14.29□□□□□ -0.12
NUP50-214ENST00000469163 MYT1LQ9UL68 1186 aa14.28□□□□□ -0.12
NUP50-214ENST00000469163 ZNF777Q9ULD5 760 aaPredicted RBP14.28□□□□□ -0.12
NUP50-214ENST00000469163 DEKP35659 375 aaKnown RBP14.25□□□□□ -0.13
NUP50-214ENST00000469163 PRDM2Q13029 1718 aa14.25□□□□□ -0.13
NUP50-214ENST00000469163 CUX1P39880 1505 aa14.23□□□□□ -0.13
NUP50-214ENST00000469163 GOLGA3Q08378 1498 aa14.23□□□□□ -0.13
NUP50-214ENST00000469163 KANK4Q5T7N3 995 aaPredicted RBP14.22□□□□□ -0.13
NUP50-214ENST00000469163 CHIC2Q9UKJ5 165 aa14.2□□□□□ -0.14
NUP50-214ENST00000469163 RTN4Q9NQC3 1192 aaKnown RBP14.2□□□□□ -0.14
NUP50-214ENST00000469163 KCNH8Q96L42 1107 aa14.19□□□□□ -0.14
NUP50-214ENST00000469163 LAMC3Q9Y6N6 1575 aa14.18□□□□□ -0.14
NUP50-214ENST00000469163 IGF1RP08069 1367 aa14.18□□□□□ -0.14
NUP50-214ENST00000469163 KIF21AQ7Z4S6 1674 aa14.17□□□□□ -0.14
NUP50-214ENST00000469163 TNIKQ9UKE5 1360 aa14.15□□□□□ -0.14
NUP50-214ENST00000469163 ERICH6BQ5W0A0 696 aa14.15□□□□□ -0.14
NUP50-214ENST00000469163 RBM19Q9Y4C8 960 aaKnown RBP14.13□□□□□ -0.15
NUP50-214ENST00000469163 BCANQ96GW7 911 aa14.12□□□□□ -0.15
NUP50-214ENST00000469163 POLA1P09884 1462 aaPredicted RBP14.12□□□□□ -0.15
NUP50-214ENST00000469163 TOP2BQ02880 1626 aa14.11□□□□□ -0.15
NUP50-214ENST00000469163 TOPBP1Q92547 1522 aa14.11□□□□□ -0.15
NUP50-214ENST00000469163 FHOD3Q2V2M9 1422 aa14.1□□□□□ -0.15
NUP50-214ENST00000469163 CNGB1Q14028 1251 aaPredicted RBP14.1□□□□□ -0.15
NUP50-214ENST00000469163 BIVM-ERCC5R4GMW8 1640 aa14.1□□□□□ -0.15
NUP50-214ENST00000469163 EEA1Q15075 1411 aa14.08□□□□□ -0.15
NUP50-214ENST00000469163 URB2Q14146 1524 aaKnown RBP14.08□□□□□ -0.15
NUP50-214ENST00000469163 MIER1Q8N108 512 aa14.08□□□□□ -0.16
NUP50-214ENST00000469163 ZNF608Q9ULD9 1512 aaPredicted RBP14.08□□□□□ -0.16
NUP50-214ENST00000469163 SENP3Q9H4L4 574 aaPredicted RBP14.07□□□□□ -0.16
NUP50-214ENST00000469163 CLSPNQ9HAW4 1339 aa14.06□□□□□ -0.16
NUP50-214ENST00000469163 TRIM52Q96A61 297 aa14.06□□□□□ -0.16
NUP50-214ENST00000469163 GAPVD1Q14C86 1478 aa14.05□□□□□ -0.16
NUP50-214ENST00000469163 MSH5O43196 834 aa14.04□□□□□ -0.16
NUP50-214ENST00000469163 PLPPR3Q6T4P5 718 aa14.02□□□□□ -0.16
NUP50-214ENST00000469163 IL27Q8NEV9 243 aa14.01□□□□□ -0.17
NUP50-214ENST00000469163 RRP7BPQ9NSQ0 103 aa14.01□□□□□ -0.17
NUP50-214ENST00000469163 MTUS2Q5JR59 1369 aa14.01□□□□□ -0.17
NUP50-214ENST00000469163 JPH4Q96JJ6 628 aa14.01□□□□□ -0.17
NUP50-214ENST00000469163 DNMBPQ6XZF7 1577 aa13.99□□□□□ -0.17
NUP50-214ENST00000469163 A0A0U1RQG5 324 aaPredicted RBP13.98□□□□□ -0.17
NUP50-214ENST00000469163 NEFLP07196 543 aa13.97□□□□□ -0.17
NUP50-214ENST00000469163 ZNF316A6NFI3 1004 aaPredicted RBP13.96□□□□□ -0.17
NUP50-214ENST00000469163 MRC2Q9UBG0 1479 aa13.95□□□□□ -0.18
NUP50-214ENST00000469163 THOC2Q8NI27 1593 aaKnown RBP13.94□□□□□ -0.18
NUP50-214ENST00000469163 NBR1Q14596 966 aa13.93□□□□□ -0.18
NUP50-214ENST00000469163 CYB5RLQ6IPT4 315 aa13.93□□□□□ -0.18
NUP50-214ENST00000469163 ZNF326Q5BKZ1 582 aaKnown RBP13.93□□□□□ -0.18
NUP50-214ENST00000469163 POLR3GLQ9BT43 218 aa13.92□□□□□ -0.18
NUP50-214ENST00000469163 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.91□□□□□ -0.18
NUP50-214ENST00000469163 HIRIP3Q9BW71 556 aaPredicted RBP13.91□□□□□ -0.18
NUP50-214ENST00000469163 AEBP2Q6ZN18 517 aaPredicted RBP13.9□□□□□ -0.18
NUP50-214ENST00000469163 VPS8Q8N3P4 1428 aa13.89□□□□□ -0.19
NUP50-214ENST00000469163 WDR62O43379 1518 aa13.89□□□□□ -0.19
NUP50-214ENST00000469163 ARAP1Q96P48 1450 aa13.89□□□□□ -0.19
NUP50-214ENST00000469163 GLIPR1L2Q4G1C9 344 aa13.89□□□□□ -0.19
NUP50-214ENST00000469163 PDE4CQ08493 712 aa13.89□□□□□ -0.19
NUP50-214ENST00000469163 SNAPC4Q5SXM2 1469 aa13.88□□□□□ -0.19
NUP50-214ENST00000469163 PLEKHD1A6NEE1 506 aa13.87□□□□□ -0.19
NUP50-214ENST00000469163 VSIG10Q8N0Z9 540 aa13.87□□□□□ -0.19
NUP50-214ENST00000469163 TIMELESSQ9UNS1 1208 aa13.87□□□□□ -0.19
NUP50-214ENST00000469163 TARBP1Q13395 1621 aaKnown RBP13.87□□□□□ -0.19
NUP50-214ENST00000469163 WDR97A6NE52 1622 aa13.86□□□□□ -0.19
NUP50-214ENST00000469163 CDK11AQ9UQ88 783 aaPredicted RBP13.86□□□□□ -0.19
NUP50-214ENST00000469163 PRXQ9BXM0 1461 aa13.86□□□□□ -0.19
NUP50-214ENST00000469163 NPM1P06748 294 aaKnown RBP eCLIP13.85□□□□□ -0.19
NUP50-214ENST00000469163 ZMYND15Q9H091 742 aa13.85□□□□□ -0.19
NUP50-214ENST00000469163 FOXD1Q16676 465 aa13.84□□□□□ -0.19
NUP50-214ENST00000469163 ZNF644Q9H582 1327 aaPredicted RBP13.83□□□□□ -0.2
NUP50-214ENST00000469163 ABCA10Q8WWZ4 1543 aa13.83□□□□□ -0.2
NUP50-214ENST00000469163 CFDP1Q9UEE9 299 aaPredicted RBP13.82□□□□□ -0.2
NUP50-214ENST00000469163 FKBP8Q14318 412 aa13.82□□□□□ -0.2
NUP50-214ENST00000469163 ARHGAP35Q9NRY4 1499 aa13.81□□□□□ -0.2
NUP50-214ENST00000469163 KIF21BO75037 1637 aa13.8□□□□□ -0.2
NUP50-214ENST00000469163 PDIA4P13667 645 aaKnown RBP13.8□□□□□ -0.2
NUP50-214ENST00000469163 SIN3AQ96ST3 1273 aa13.8□□□□□ -0.2
NUP50-214ENST00000469163 GRIN2BQ13224 1484 aa13.79□□□□□ -0.2
NUP50-214ENST00000469163 OSCARQ8IYS5 282 aa13.78□□□□□ -0.2
NUP50-214ENST00000469163 ABCA5Q8WWZ7 1642 aa13.78□□□□□ -0.2
NUP50-214ENST00000469163 RTL5Q5HYW3 569 aaPredicted RBP13.77□□□□□ -0.2
NUP50-214ENST00000469163 IFT140Q96RY7 1462 aa13.75□□□□□ -0.21
NUP50-214ENST00000469163 HNRNPMP52272 730 aaKnown RBP eCLIP13.75□□□□□ -0.21
NUP50-214ENST00000469163 FHAD1B1AJZ9 1412 aa13.75□□□□□ -0.21
NUP50-214ENST00000469163 TRHP20396 242 aaPredicted RBP13.74□□□□□ -0.21
NUP50-214ENST00000469163 FANCIQ9NVI1 1328 aa13.73□□□□□ -0.21
NUP50-214ENST00000469163 BCL11BQ9C0K0 894 aaPredicted RBP13.72□□□□□ -0.21
NUP50-214ENST00000469163 KLHL34Q8N239 644 aa13.71□□□□□ -0.21
NUP50-214ENST00000469163 CCNB3Q8WWL7 1395 aa13.71□□□□□ -0.22
NUP50-214ENST00000469163 PTPRGP23470 1445 aa13.7□□□□□ -0.22
NUP50-214ENST00000469163 PRG4Q92954 1404 aaPredicted RBP13.7□□□□□ -0.22
NUP50-214ENST00000469163 EIF4G3O43432 1585 aaKnown RBP13.7□□□□□ -0.22
NUP50-214ENST00000469163 FGD1P98174 961 aa13.7□□□□□ -0.22
NUP50-214ENST00000469163 TSPY4P0CV99 314 aa13.69□□□□□ -0.22
NUP50-214ENST00000469163 TSPY10P0CW01 314 aa13.69□□□□□ -0.22
NUP50-214ENST00000469163 KDM2AQ9Y2K7 1162 aa13.69□□□□□ -0.22
NUP50-214ENST00000469163 PHLDB1Q86UU1 1377 aa13.69□□□□□ -0.22
NUP50-214ENST00000469163 PBRM1Q86U86 1689 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms