RNA–Protein interactions for RNA: ENST00000469163.1

NUP50-214, Transcript of nucleoporin 50, humanhuman

TSL 2

Gene NUP50, Length 3,507 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-214ENST00000469163 NISCHQ9Y2I1 1504 aa19.54■□□□□ 0.72
NUP50-214ENST00000469163 DCAF8L2P0C7V8 631 aa18.29■□□□□ 0.52
NUP50-214ENST00000469163 SHROOM4Q9ULL8 1493 aa17.61■□□□□ 0.41
NUP50-214ENST00000469163 PELP1Q8IZL8 1130 aaKnown RBP17.42■□□□□ 0.38
NUP50-214ENST00000469163 SUPT5HO00267 1087 aaKnown RBP17.13■□□□□ 0.33
NUP50-214ENST00000469163 MYT1Q01538 1121 aa17.07■□□□□ 0.32
NUP50-214ENST00000469163 CCDC180Q9P1Z9 1646 aa17.01■□□□□ 0.31
NUP50-214ENST00000469163 ABCC9O60706 1549 aa16.94■□□□□ 0.3
NUP50-214ENST00000469163 PABPN1Q86U42 306 aaKnown RBP eCLIP16.51■□□□□ 0.23
NUP50-214ENST00000469163 EHMT2Q96KQ7 1210 aa16.45■□□□□ 0.22
NUP50-214ENST00000469163 ZCCHC6Q5VYS8 1495 aaKnown RBP16.39■□□□□ 0.21
NUP50-214ENST00000469163 HRCP23327 699 aa16.32■□□□□ 0.2
NUP50-214ENST00000469163 TTBK1Q5TCY1 1321 aaPredicted RBP16.27■□□□□ 0.19
NUP50-214ENST00000469163 PRKCSHP14314 528 aaPredicted RBP16.18■□□□□ 0.18
NUP50-214ENST00000469163 PPARGC1BQ86YN6 1023 aaKnown RBP16.11■□□□□ 0.17
NUP50-214ENST00000469163 SCAF1Q9H7N4 1312 aaKnown RBP16.1■□□□□ 0.17
NUP50-214ENST00000469163 SCRIBQ14160 1630 aa16.1■□□□□ 0.17
NUP50-214ENST00000469163 FAM9AQ8IZU1 332 aaPredicted RBP16.08■□□□□ 0.16
NUP50-214ENST00000469163 DCAF1Q9Y4B6 1507 aa16.05■□□□□ 0.16
NUP50-214ENST00000469163 BCL11AQ9H165 835 aa15.93■□□□□ 0.14
NUP50-214ENST00000469163 MYO15BQ96JP2 1530 aa15.88■□□□□ 0.13
NUP50-214ENST00000469163 NACADO15069 1562 aa15.86■□□□□ 0.13
NUP50-214ENST00000469163 RB1CC1Q8TDY2 1594 aa15.77■□□□□ 0.12
NUP50-214ENST00000469163 ERICH6Q7L0X2 663 aa15.77■□□□□ 0.12
NUP50-214ENST00000469163 RANGAP1P46060 587 aaPredicted RBP15.75■□□□□ 0.11
NUP50-214ENST00000469163 TRIM41Q8WV44 630 aa15.68■□□□□ 0.1
NUP50-214ENST00000469163 PCGF6Q9BYE7 350 aa15.67■□□□□ 0.1
NUP50-214ENST00000469163 UNC13AQ9UPW8 1703 aa15.66■□□□□ 0.1
NUP50-214ENST00000469163 CECR2Q9BXF3 1484 aa15.64■□□□□ 0.09
NUP50-214ENST00000469163 LOC105371045A0A1W2PR82 267 aa15.63■□□□□ 0.09
NUP50-214ENST00000469163 CHIC1Q5VXU3 224 aa15.61■□□□□ 0.09
NUP50-214ENST00000469163 CENPBP07199 599 aaPredicted RBP15.54■□□□□ 0.08
NUP50-214ENST00000469163 APLP2Q06481 763 aa15.52■□□□□ 0.08
NUP50-214ENST00000469163 BICRAQ9NZM4 1560 aa15.48■□□□□ 0.07
NUP50-214ENST00000469163 RSF1Q96T23 1441 aaPredicted RBP15.43■□□□□ 0.06
NUP50-214ENST00000469163 GTF3C3Q9Y5Q9 886 aa15.42■□□□□ 0.06
NUP50-214ENST00000469163 ACIN1Q9UKV3 1341 aaKnown RBP15.37■□□□□ 0.05
NUP50-214ENST00000469163 SLC24A1O60721 1099 aa15.36■□□□□ 0.05
NUP50-214ENST00000469163 MROH2BQ7Z745 1585 aa15.33■□□□□ 0.04
NUP50-214ENST00000469163 NEUROD1Q13562 356 aa15.31■□□□□ 0.04
NUP50-214ENST00000469163 UBTFP17480 764 aaKnown RBP15.27■□□□□ 0.04
NUP50-214ENST00000469163 DNAJC5BQ9UF47 199 aa15.24■□□□□ 0.03
NUP50-214ENST00000469163 WIZO95785 1651 aa15.17■□□□□ 0.02
NUP50-214ENST00000469163 ATP1B4Q9UN42 357 aaPredicted RBP15.16■□□□□ 0.02
NUP50-214ENST00000469163 ANP32EQ9BTT0 268 aa15.13■□□□□ 0.01
NUP50-214ENST00000469163 CSRNP3Q8WYN3 585 aa15.06■□□□□ 0
NUP50-214ENST00000469163 SMARCA4P51532 1647 aa15.06■□□□□ 0
NUP50-214ENST00000469163 BAZ1AQ9NRL2 1556 aaPredicted RBP15.03■□□□□ -0
NUP50-214ENST00000469163 BAZ1BQ9UIG0 1483 aaKnown RBP15.02■□□□□ -0
NUP50-214ENST00000469163 ZEB1P37275 1124 aaPredicted RBP15.02□□□□□ -0.01
NUP50-214ENST00000469163 FBLN2P98095 1184 aa14.97□□□□□ -0.01
NUP50-214ENST00000469163 CCDC88BA6NC98 1476 aa14.95□□□□□ -0.02
NUP50-214ENST00000469163 EIF4G1Q04637 1599 aaKnown RBP14.95□□□□□ -0.02
NUP50-214ENST00000469163 P3H3Q8IVL6 736 aa14.93□□□□□ -0.02
NUP50-214ENST00000469163 EIF5BO60841 1220 aaKnown RBP14.92□□□□□ -0.02
NUP50-214ENST00000469163 ABCC8Q09428 1581 aa14.92□□□□□ -0.02
NUP50-214ENST00000469163 ARID3CA6NKF2 412 aa14.91□□□□□ -0.02
NUP50-214ENST00000469163 ATAD2BQ9ULI0 1458 aa14.88□□□□□ -0.03
NUP50-214ENST00000469163 ANO8Q9HCE9 1232 aaPredicted RBP14.87□□□□□ -0.03
NUP50-214ENST00000469163 PEG3Q9GZU2 1588 aa14.84□□□□□ -0.03
NUP50-214ENST00000469163 CC2D2AQ9P2K1 1620 aa14.79□□□□□ -0.04
NUP50-214ENST00000469163 ITGAEP38570 1179 aa14.79□□□□□ -0.04
NUP50-214ENST00000469163 TOP2AP11388 1531 aaKnown RBP14.77□□□□□ -0.04
NUP50-214ENST00000469163 SOGA1O94964 1423 aa14.77□□□□□ -0.05
NUP50-214ENST00000469163 DAXXQ9UER7 740 aaPredicted RBP14.74□□□□□ -0.05
NUP50-214ENST00000469163 SMARCA2P51531 1590 aa14.73□□□□□ -0.05
NUP50-214ENST00000469163 YTHDC1Q96MU7 727 aaKnown RBP14.72□□□□□ -0.05
NUP50-214ENST00000469163 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.72□□□□□ -0.05
NUP50-214ENST00000469163 HNRNPUL2Q1KMD3 747 aaKnown RBP14.72□□□□□ -0.05
NUP50-214ENST00000469163 WRNQ14191 1432 aaPredicted RBP eCLIP14.71□□□□□ -0.05
NUP50-214ENST00000469163 NESP48681 1621 aa14.7□□□□□ -0.06
NUP50-214ENST00000469163 PLEKHG5O94827 1062 aa14.69□□□□□ -0.06
NUP50-214ENST00000469163 NCAPD3P42695 1498 aa14.69□□□□□ -0.06
NUP50-214ENST00000469163 RUSC2Q8N2Y8 1516 aa14.68□□□□□ -0.06
NUP50-214ENST00000469163 TRIM26Q12899 539 aaPredicted RBP14.67□□□□□ -0.06
NUP50-214ENST00000469163 HMGXB3Q12766 1538 aa14.63□□□□□ -0.07
NUP50-214ENST00000469163 CCDC136Q96JN2 1154 aa14.63□□□□□ -0.07
NUP50-214ENST00000469163 UBE2Q2Q8WVN8 375 aa14.59□□□□□ -0.07
NUP50-214ENST00000469163 DIEXFQ68CQ4 756 aaKnown RBP14.59□□□□□ -0.07
NUP50-214ENST00000469163 TDRD9Q8NDG6 1382 aaKnown RBP14.59□□□□□ -0.07
NUP50-214ENST00000469163 ERCC6Q03468 1493 aa14.57□□□□□ -0.08
NUP50-214ENST00000469163 CADPSQ9ULU8 1353 aa14.56□□□□□ -0.08
NUP50-214ENST00000469163 SALL2Q9Y467 1007 aaPredicted RBP14.53□□□□□ -0.08
NUP50-214ENST00000469163 TSHZ2Q9NRE2 1034 aa14.52□□□□□ -0.08
NUP50-214ENST00000469163 PODXL2Q9NZ53 605 aa14.47□□□□□ -0.09
NUP50-214ENST00000469163 CCER1Q8TC90 406 aaPredicted RBP14.47□□□□□ -0.09
NUP50-214ENST00000469163 CUX2O14529 1486 aa14.46□□□□□ -0.09
NUP50-214ENST00000469163 CHMP7Q8WUX9 453 aaPredicted RBP14.44□□□□□ -0.1
NUP50-214ENST00000469163 RAD54L2Q9Y4B4 1467 aa14.44□□□□□ -0.1
NUP50-214ENST00000469163 FANCD2Q9BXW9 1451 aa14.43□□□□□ -0.1
NUP50-214ENST00000469163 PKNOX2Q96KN3 472 aa14.43□□□□□ -0.1
NUP50-214ENST00000469163 FAM50AQ14320 339 aaKnown RBP14.4□□□□□ -0.1
NUP50-214ENST00000469163 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.38□□□□□ -0.11
NUP50-214ENST00000469163 CFTRP13569 1480 aa14.36□□□□□ -0.11
NUP50-214ENST00000469163 CEP162Q5TB80 1403 aa14.34□□□□□ -0.11
NUP50-214ENST00000469163 SYNJ1O43426 1573 aa14.34□□□□□ -0.11
NUP50-214ENST00000469163 KIF27Q86VH2 1401 aa14.33□□□□□ -0.11
NUP50-214ENST00000469163 PDS5BQ9NTI5 1447 aa14.33□□□□□ -0.11
NUP50-214ENST00000469163 RAPGEF2Q9Y4G8 1499 aa14.31□□□□□ -0.12
NUP50-214ENST00000469163 CLIP1P30622 1438 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms