RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 ZNF219Q9P2Y4 722 aaPredicted RBP9.84□□□□□ -0.83
USP39-213ENST00000467885 AQRO60306 1485 aaKnown RBP eCLIP9.84□□□□□ -0.831e-6■□□□□ 10.8
USP39-213ENST00000467885 IFT140Q96RY7 1462 aa9.84□□□□□ -0.83
USP39-213ENST00000467885 ABCA10Q8WWZ4 1543 aa9.83□□□□□ -0.84
USP39-213ENST00000467885 LOC105371045A0A1W2PR82 267 aa9.83□□□□□ -0.84
USP39-213ENST00000467885 KIF27Q86VH2 1401 aa9.82□□□□□ -0.84
USP39-213ENST00000467885 TARBP1Q13395 1621 aaKnown RBP9.81□□□□□ -0.84
USP39-213ENST00000467885 ZNF608Q9ULD9 1512 aaPredicted RBP9.81□□□□□ -0.84
USP39-213ENST00000467885 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.8□□□□□ -0.84
USP39-213ENST00000467885 HNRNPUL2Q1KMD3 747 aaKnown RBP9.8□□□□□ -0.84
USP39-213ENST00000467885 GAPVD1Q14C86 1478 aa9.78□□□□□ -0.84
USP39-213ENST00000467885 EEA1Q15075 1411 aa9.77□□□□□ -0.85
USP39-213ENST00000467885 CARMIL1Q5VZK9 1371 aa9.76□□□□□ -0.85
USP39-213ENST00000467885 SAMD1Q6SPF0 538 aaPredicted RBP9.75□□□□□ -0.85
USP39-213ENST00000467885 EHMT2Q96KQ7 1210 aa9.73□□□□□ -0.85
USP39-213ENST00000467885 GRIN2BQ13224 1484 aa9.72□□□□□ -0.85
USP39-213ENST00000467885 PRXQ9BXM0 1461 aa9.72□□□□□ -0.85
USP39-213ENST00000467885 CHMP7Q8WUX9 453 aaPredicted RBP9.71□□□□□ -0.86
USP39-213ENST00000467885 UBTFP17480 764 aaKnown RBP9.69□□□□□ -0.86
USP39-213ENST00000467885 FBLN2P98095 1184 aa9.69□□□□□ -0.86
USP39-213ENST00000467885 ABCA5Q8WWZ7 1642 aa9.68□□□□□ -0.86
USP39-213ENST00000467885 ERICH3Q5RHP9 1530 aa9.68□□□□□ -0.86
USP39-213ENST00000467885 FHAD1B1AJZ9 1412 aa9.68□□□□□ -0.86
USP39-213ENST00000467885 WDR97A6NE52 1622 aa9.67□□□□□ -0.86
USP39-213ENST00000467885 RAPGEF2Q9Y4G8 1499 aa9.66□□□□□ -0.86
USP39-213ENST00000467885 SNAPC4Q5SXM2 1469 aa9.65□□□□□ -0.87
USP39-213ENST00000467885 OSCARQ8IYS5 282 aa9.63□□□□□ -0.87
USP39-213ENST00000467885 MAGI1Q96QZ7 1491 aaPredicted RBP9.63□□□□□ -0.87
USP39-213ENST00000467885 EIF4G3O43432 1585 aaKnown RBP9.63□□□□□ -0.87
USP39-213ENST00000467885 TNIKQ9UKE5 1360 aa9.63□□□□□ -0.87
USP39-213ENST00000467885 SYNJ2O15056 1496 aa9.61□□□□□ -0.87
USP39-213ENST00000467885 JPH4Q96JJ6 628 aa9.61□□□□□ -0.87
USP39-213ENST00000467885 RBM42Q9BTD8 480 aaKnown RBP9.61□□□□□ -0.87
USP39-213ENST00000467885 MYCNP04198 464 aaPredicted RBP9.6□□□□□ -0.87
USP39-213ENST00000467885 GOLGA3Q08378 1498 aa9.59□□□□□ -0.87
USP39-213ENST00000467885 POLA2Q14181 598 aa9.58□□□□□ -0.88
USP39-213ENST00000467885 GRIN2AQ12879 1464 aa9.58□□□□□ -0.88
USP39-213ENST00000467885 KIF21BO75037 1637 aa9.57□□□□□ -0.88
USP39-213ENST00000467885 RANGAP1P46060 587 aaPredicted RBP9.57□□□□□ -0.88
USP39-213ENST00000467885 NUP160Q12769 1436 aa9.56□□□□□ -0.88
USP39-213ENST00000467885 CUL7Q14999 1698 aa9.55□□□□□ -0.88
USP39-213ENST00000467885 ADAMTS12P58397 1594 aa9.55□□□□□ -0.88
USP39-213ENST00000467885 KIAA0586Q9BVV6 1533 aa9.55□□□□□ -0.88
USP39-213ENST00000467885 PBRM1Q86U86 1689 aa9.55□□□□□ -0.88
USP39-213ENST00000467885 P3H3Q8IVL6 736 aa9.54□□□□□ -0.88
USP39-213ENST00000467885 CHRDL2Q6WN34 429 aa9.5□□□□□ -0.89
USP39-213ENST00000467885 CEP170Q5SW79 1584 aa9.5□□□□□ -0.89
USP39-213ENST00000467885 CEP162Q5TB80 1403 aa9.48□□□□□ -0.89
USP39-213ENST00000467885 CLIP1P30622 1438 aa9.48□□□□□ -0.89
USP39-213ENST00000467885 PRG4Q92954 1404 aaPredicted RBP9.46□□□□□ -0.9
USP39-213ENST00000467885 ARHGAP35Q9NRY4 1499 aa9.46□□□□□ -0.9
USP39-213ENST00000467885 DISP1Q96F81 1524 aa9.44□□□□□ -0.9
USP39-213ENST00000467885 UGGT2Q9NYU1 1516 aa9.44□□□□□ -0.9
USP39-213ENST00000467885 CHD1O14646 1710 aa9.43□□□□□ -0.9
USP39-213ENST00000467885 CLASP1Q7Z460 1538 aa9.43□□□□□ -0.9
USP39-213ENST00000467885 IQGAP2Q13576 1575 aa9.42□□□□□ -0.9
USP39-213ENST00000467885 ARAP1Q96P48 1450 aa9.42□□□□□ -0.9
USP39-213ENST00000467885 TTBK1Q5TCY1 1321 aaPredicted RBP9.42□□□□□ -0.9
USP39-213ENST00000467885 ATF5Q9Y2D1 282 aaPredicted RBP9.42□□□□□ -0.9
USP39-213ENST00000467885 CARMIL2Q6F5E8 1435 aa9.41□□□□□ -0.9
USP39-213ENST00000467885 DNAJC5Q9H3Z4 198 aa9.41□□□□□ -0.9
USP39-213ENST00000467885 PTPRGP23470 1445 aa9.4□□□□□ -0.9
USP39-213ENST00000467885 FOXD4L1Q9NU39 408 aa9.4□□□□□ -0.9
USP39-213ENST00000467885 FHOD3Q2V2M9 1422 aa9.39□□□□□ -0.91
USP39-213ENST00000467885 SLC4A1APQ9BWU0 796 aaKnown RBP9.39□□□□□ -0.91
USP39-213ENST00000467885 ERCC6L2Q5T890 1561 aa9.37□□□□□ -0.91
USP39-213ENST00000467885 CYB5RLQ6IPT4 315 aa9.37□□□□□ -0.91
USP39-213ENST00000467885 ATP1B4Q9UN42 357 aaPredicted RBP9.37□□□□□ -0.91
USP39-213ENST00000467885 SHROOM2Q13796 1616 aa9.37□□□□□ -0.91
USP39-213ENST00000467885 AKT1S1Q96B36 256 aa9.36□□□□□ -0.91
USP39-213ENST00000467885 CTTNBP2Q8WZ74 1663 aa9.36□□□□□ -0.91
USP39-213ENST00000467885 SAMD9Q5K651 1589 aa9.35□□□□□ -0.91
USP39-213ENST00000467885 VPS8Q8N3P4 1428 aa9.35□□□□□ -0.91
USP39-213ENST00000467885 EFCAB5A4FU69 1503 aa9.35□□□□□ -0.91
USP39-213ENST00000467885 FMN1Q68DA7 1419 aa9.34□□□□□ -0.91
USP39-213ENST00000467885 KANK4Q5T7N3 995 aaPredicted RBP9.34□□□□□ -0.91
USP39-213ENST00000467885 ZBTB12Q9Y330 459 aaPredicted RBP9.34□□□□□ -0.91
USP39-213ENST00000467885 PPARGC1BQ86YN6 1023 aaKnown RBP9.33□□□□□ -0.92
USP39-213ENST00000467885 CASKIN1Q8WXD9 1431 aa9.32□□□□□ -0.92
USP39-213ENST00000467885 ARID3CA6NKF2 412 aa9.32□□□□□ -0.92
USP39-213ENST00000467885 PLB1Q6P1J6 1458 aa9.32□□□□□ -0.92
USP39-213ENST00000467885 UACAQ9BZF9 1416 aa9.31□□□□□ -0.92
USP39-213ENST00000467885 KIAA0556O60303 1618 aa9.31□□□□□ -0.92
USP39-213ENST00000467885 ARHGEF11O15085 1522 aa9.3□□□□□ -0.92
USP39-213ENST00000467885 ATP10BO94823 1461 aa9.29□□□□□ -0.92
USP39-213ENST00000467885 PLEKHD1A6NEE1 506 aa9.28□□□□□ -0.92
USP39-213ENST00000467885 REM2Q8IYK8 340 aaPredicted RBP9.28□□□□□ -0.92
USP39-213ENST00000467885 NPM1P06748 294 aaKnown RBP eCLIP9.27□□□□□ -0.93
USP39-213ENST00000467885 UHRF1BP1LA0JNW5 1464 aa9.27□□□□□ -0.93
USP39-213ENST00000467885 NUP153P49790 1475 aaKnown RBP9.27□□□□□ -0.93
USP39-213ENST00000467885 ABCA8O94911 1581 aa9.26□□□□□ -0.93
USP39-213ENST00000467885 CDK11AQ9UQ88 783 aaPredicted RBP9.26□□□□□ -0.93
USP39-213ENST00000467885 SP7Q8TDD2 431 aaPredicted RBP9.25□□□□□ -0.93
USP39-213ENST00000467885 FYCO1Q9BQS8 1478 aa9.24□□□□□ -0.93
USP39-213ENST00000467885 PIP4P2Q8N4L2 257 aa9.24□□□□□ -0.93
USP39-213ENST00000467885 EPRSP07814 1512 aaKnown RBP9.24□□□□□ -0.93
USP39-213ENST00000467885 MAP3K1Q13233 1512 aa9.24□□□□□ -0.93
USP39-213ENST00000467885 RIMBP3CA6NJZ7 1639 aa9.23□□□□□ -0.93
USP39-213ENST00000467885 RIMBP3BA6NNM3 1639 aa9.23□□□□□ -0.93
USP39-213ENST00000467885 RIMBP3Q9UFD9 1639 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms