RNA–Protein interactions for RNA: ENST00000467238.1

SND1-205, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 3

Gene SND1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-205ENST00000467238 PLSCR2Q9NRY7 297 aa13.64□□□□□ -0.23
SND1-205ENST00000467238 BAZ1BQ9UIG0 1483 aaKnown RBP13.61□□□□□ -0.23
SND1-205ENST00000467238 FARP1Q9Y4F1 1045 aaPredicted RBP13.61□□□□□ -0.23
SND1-205ENST00000467238 MROH2BQ7Z745 1585 aa13.6□□□□□ -0.23
SND1-205ENST00000467238 ERCC6Q03468 1493 aa13.57□□□□□ -0.24
SND1-205ENST00000467238 CUX2O14529 1486 aa13.55□□□□□ -0.24
SND1-205ENST00000467238 NESP48681 1621 aa13.54□□□□□ -0.24
SND1-205ENST00000467238 CLCN6P51797 869 aa13.49□□□□□ -0.25
SND1-205ENST00000467238 LAMC3Q9Y6N6 1575 aa13.49□□□□□ -0.25
SND1-205ENST00000467238 DCBLD2Q96PD2 775 aa13.48□□□□□ -0.25
SND1-205ENST00000467238 WIZO95785 1651 aa13.47□□□□□ -0.25
SND1-205ENST00000467238 THOC2Q8NI27 1593 aaKnown RBP13.45□□□□□ -0.26
SND1-205ENST00000467238 KIF21AQ7Z4S6 1674 aa13.44□□□□□ -0.26
SND1-205ENST00000467238 ZNF579Q8NAF0 562 aaKnown RBP13.44□□□□□ -0.26
SND1-205ENST00000467238 DNAJC5Q9H3Z4 198 aa13.44□□□□□ -0.26
SND1-205ENST00000467238 OTUD5Q96G74 571 aa13.42□□□□□ -0.26
SND1-205ENST00000467238 POTEB2H3BUK9 544 aa13.39□□□□□ -0.27
SND1-205ENST00000467238 ZRANB1Q9UGI0 708 aa13.37□□□□□ -0.27
SND1-205ENST00000467238 PDS5BQ9NTI5 1447 aa13.37□□□□□ -0.27
SND1-205ENST00000467238 GALR2O43603 387 aaPredicted RBP13.36□□□□□ -0.27
SND1-205ENST00000467238 CADPSQ9ULU8 1353 aa13.34□□□□□ -0.27
SND1-205ENST00000467238 RSF1Q96T23 1441 aaPredicted RBP13.32□□□□□ -0.28
SND1-205ENST00000467238 CREBZFQ9NS37 354 aa13.31□□□□□ -0.28
SND1-205ENST00000467238 EHMT2Q96KQ7 1210 aa13.3□□□□□ -0.28
SND1-205ENST00000467238 TOP2AP11388 1531 aaKnown RBP13.29□□□□□ -0.28
SND1-205ENST00000467238 POTEMA6NI47 508 aa13.26□□□□□ -0.29
SND1-205ENST00000467238 CSRNP3Q8WYN3 585 aa13.26□□□□□ -0.29
SND1-205ENST00000467238 MRC2Q9UBG0 1479 aa13.26□□□□□ -0.29
SND1-205ENST00000467238 WDR62O43379 1518 aa13.25□□□□□ -0.29
SND1-205ENST00000467238 CFTRP13569 1480 aa13.23□□□□□ -0.29
SND1-205ENST00000467238 PRDM2Q13029 1718 aa13.22□□□□□ -0.29
SND1-205ENST00000467238 CEP164Q9UPV0 1460 aa13.22□□□□□ -0.29
SND1-205ENST00000467238 POTEGQ6S5H5 508 aa13.21□□□□□ -0.29
SND1-205ENST00000467238 PELP1Q8IZL8 1130 aaKnown RBP13.21□□□□□ -0.29
SND1-205ENST00000467238 PHF12Q96QT6 1004 aa13.2□□□□□ -0.3
SND1-205ENST00000467238 FANCD2Q9BXW9 1451 aa13.2□□□□□ -0.3
SND1-205ENST00000467238 CCDC88BA6NC98 1476 aa13.11□□□□□ -0.31
SND1-205ENST00000467238 POTEJP0CG39 1038 aa13.11□□□□□ -0.31
SND1-205ENST00000467238 URB2Q14146 1524 aaKnown RBP13.1□□□□□ -0.31
SND1-205ENST00000467238 STAG3Q9UJ98 1225 aa13.06□□□□□ -0.32
SND1-205ENST00000467238 MNX1P50219 401 aaPredicted RBP13.04□□□□□ -0.32
SND1-205ENST00000467238 PAK3O75914 559 aaPredicted RBP13.03□□□□□ -0.32
SND1-205ENST00000467238 LCE2DQ5TA82 110 aaPredicted RBP13.03□□□□□ -0.32
SND1-205ENST00000467238 ASTLQ6HA08 431 aaPredicted RBP13.02□□□□□ -0.33
SND1-205ENST00000467238 METRNQ9UJH8 293 aa13.02□□□□□ -0.33
SND1-205ENST00000467238 ATMINO43313 823 aaPredicted RBP12.98□□□□□ -0.33
SND1-205ENST00000467238 MS4A3Q96HJ5 214 aa12.98□□□□□ -0.33
SND1-205ENST00000467238 PCDH10Q9P2E7 1040 aa12.98□□□□□ -0.33
SND1-205ENST00000467238 TOPBP1Q92547 1522 aa12.98□□□□□ -0.33
SND1-205ENST00000467238 DNMBPQ6XZF7 1577 aa12.95□□□□□ -0.34
SND1-205ENST00000467238 IFT140Q96RY7 1462 aa12.95□□□□□ -0.34
SND1-205ENST00000467238 ABCC8Q09428 1581 aa12.94□□□□□ -0.34
SND1-205ENST00000467238 C7P10643 843 aa12.93□□□□□ -0.34
SND1-205ENST00000467238 SLC39A7Q92504 469 aa12.93□□□□□ -0.34
SND1-205ENST00000467238 ZNF608Q9ULD9 1512 aaPredicted RBP12.93□□□□□ -0.34
SND1-205ENST00000467238 NPM1P06748 294 aaKnown RBP eCLIP12.92□□□□□ -0.34
SND1-205ENST00000467238 SPDYE4A6NLX3 237 aa12.89□□□□□ -0.35
SND1-205ENST00000467238 EIF4G3O43432 1585 aaKnown RBP12.89□□□□□ -0.35
SND1-205ENST00000467238 TARBP1Q13395 1621 aaKnown RBP12.88□□□□□ -0.35
SND1-205ENST00000467238 FAM163AQ96GL9 167 aaPredicted RBP12.86□□□□□ -0.35
SND1-205ENST00000467238 MAMSTRQ6ZN01 415 aa12.85□□□□□ -0.35
SND1-205ENST00000467238 TRIM41Q8WV44 630 aa12.85□□□□□ -0.35
SND1-205ENST00000467238 POLA1P09884 1462 aaPredicted RBP12.85□□□□□ -0.35
SND1-205ENST00000467238 POTEFA5A3E0 1075 aa12.83□□□□□ -0.36
SND1-205ENST00000467238 ATN1P54259 1190 aaPredicted RBP12.83□□□□□ -0.36
SND1-205ENST00000467238 CHD1O14646 1710 aa12.82□□□□□ -0.36
SND1-205ENST00000467238 AQRO60306 1485 aaKnown RBP eCLIP12.8□□□□□ -0.36
SND1-205ENST00000467238 RIMBP3CA6NJZ7 1639 aa12.8□□□□□ -0.36
SND1-205ENST00000467238 RIMBP3BA6NNM3 1639 aa12.8□□□□□ -0.36
SND1-205ENST00000467238 RIMBP3Q9UFD9 1639 aa12.8□□□□□ -0.36
SND1-205ENST00000467238 RAD54L2Q9Y4B4 1467 aa12.78□□□□□ -0.36
SND1-205ENST00000467238 CUX1P39880 1505 aa12.78□□□□□ -0.36
SND1-205ENST00000467238 SCUBE2Q9NQ36 999 aa12.77□□□□□ -0.37
SND1-205ENST00000467238 FGD5Q6ZNL6 1462 aa12.77□□□□□ -0.37
SND1-205ENST00000467238 WDR97A6NE52 1622 aa12.77□□□□□ -0.37
SND1-205ENST00000467238 CCDC61Q9Y6R9 512 aa12.76□□□□□ -0.37
SND1-205ENST00000467238 SOGA1O94964 1423 aa12.75□□□□□ -0.37
SND1-205ENST00000467238 TSPYL2Q9H2G4 693 aaPredicted RBP12.75□□□□□ -0.37
SND1-205ENST00000467238 TRPC6Q9Y210 931 aa12.75□□□□□ -0.37
SND1-205ENST00000467238 ARHGEF11O15085 1522 aa12.74□□□□□ -0.37
SND1-205ENST00000467238 BMP2KQ9NSY1 1161 aaPredicted RBP12.73□□□□□ -0.37
SND1-205ENST00000467238 SUPT5HO00267 1087 aaKnown RBP12.72□□□□□ -0.37
SND1-205ENST00000467238 TDRD9Q8NDG6 1382 aaKnown RBP12.71□□□□□ -0.37
SND1-205ENST00000467238 KIF12Q96FN5 646 aa12.71□□□□□ -0.37
SND1-205ENST00000467238 SNAPC4Q5SXM2 1469 aa12.69□□□□□ -0.38
SND1-205ENST00000467238 PBRM1Q86U86 1689 aa12.69□□□□□ -0.38
SND1-205ENST00000467238 MAGI1Q96QZ7 1491 aaPredicted RBP12.67□□□□□ -0.38
SND1-205ENST00000467238 GRIN2BQ13224 1484 aa12.65□□□□□ -0.38
SND1-205ENST00000467238 COLQQ9Y215 455 aaPredicted RBP12.65□□□□□ -0.38
SND1-205ENST00000467238 ABCA5Q8WWZ7 1642 aa12.64□□□□□ -0.39
SND1-205ENST00000467238 CLASP1Q7Z460 1538 aa12.63□□□□□ -0.39
SND1-205ENST00000467238 ABCA10Q8WWZ4 1543 aa12.63□□□□□ -0.39
SND1-205ENST00000467238 BIVM-ERCC5R4GMW8 1640 aa12.63□□□□□ -0.39
SND1-205ENST00000467238 CDAN1Q8IWY9 1227 aa12.63□□□□□ -0.39
SND1-205ENST00000467238 GAPVD1Q14C86 1478 aa12.63□□□□□ -0.39
SND1-205ENST00000467238 SYNJ1O43426 1573 aa12.62□□□□□ -0.39
SND1-205ENST00000467238 SYNJ2O15056 1496 aa12.61□□□□□ -0.39
SND1-205ENST00000467238 ARAP1Q96P48 1450 aa12.61□□□□□ -0.39
SND1-205ENST00000467238 TOP2BQ02880 1626 aa12.61□□□□□ -0.39
SND1-205ENST00000467238 MAP3K13O43283 966 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms