RNA–Protein interactions for RNA: ENST00000466010.1

TPM3-214, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 461 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-214ENST00000466010 PAXIP1Q6ZW49 1069 aaPredicted RBP11.69□□□□□ -0.54
TPM3-214ENST00000466010 MRC2Q9UBG0 1479 aa11.69□□□□□ -0.54
TPM3-214ENST00000466010 KIF21AQ7Z4S6 1674 aa11.68□□□□□ -0.54
TPM3-214ENST00000466010 POLA2Q14181 598 aa11.68□□□□□ -0.54
TPM3-214ENST00000466010 TPRNQ4KMQ1 711 aa11.68□□□□□ -0.54
TPM3-214ENST00000466010 CFAP44Q96MT7 982 aa11.67□□□□□ -0.54
TPM3-214ENST00000466010 ZBTB12Q9Y330 459 aaPredicted RBP11.67□□□□□ -0.54
TPM3-214ENST00000466010 CEP164Q9UPV0 1460 aa11.67□□□□□ -0.54
TPM3-214ENST00000466010 WDR62O43379 1518 aa11.65□□□□□ -0.55
TPM3-214ENST00000466010 FANCD2Q9BXW9 1451 aa11.64□□□□□ -0.55
TPM3-214ENST00000466010 KDM2AQ9Y2K7 1162 aa11.63□□□□□ -0.55
TPM3-214ENST00000466010 STAG3Q9UJ98 1225 aa11.6□□□□□ -0.55
TPM3-214ENST00000466010 CCDC88BA6NC98 1476 aa11.58□□□□□ -0.56
TPM3-214ENST00000466010 SPRYD3Q8NCJ5 442 aa11.58□□□□□ -0.56
TPM3-214ENST00000466010 SPINK5Q9NQ38 1064 aaPredicted RBP11.57□□□□□ -0.56
TPM3-214ENST00000466010 CAPN15O75808 1086 aa11.56□□□□□ -0.56
TPM3-214ENST00000466010 NPM1P06748 294 aaKnown RBP eCLIP11.56□□□□□ -0.56
TPM3-214ENST00000466010 PRDM2Q13029 1718 aa11.55□□□□□ -0.56
TPM3-214ENST00000466010 PLCD3Q8N3E9 789 aa11.54□□□□□ -0.56
TPM3-214ENST00000466010 ABCC8Q09428 1581 aa11.51□□□□□ -0.57
TPM3-214ENST00000466010 URB2Q14146 1524 aaKnown RBP11.5□□□□□ -0.57
TPM3-214ENST00000466010 RGL2O15211 777 aa11.49□□□□□ -0.57
TPM3-214ENST00000466010 NBR1Q14596 966 aa11.46□□□□□ -0.57
TPM3-214ENST00000466010 TSHZ2Q9NRE2 1034 aa11.46□□□□□ -0.57
TPM3-214ENST00000466010 ZNF692Q9BU19 519 aaPredicted RBP11.45□□□□□ -0.58
TPM3-214ENST00000466010 IFT140Q96RY7 1462 aa11.44□□□□□ -0.58
TPM3-214ENST00000466010 TOPBP1Q92547 1522 aa11.43□□□□□ -0.58
TPM3-214ENST00000466010 DNMBPQ6XZF7 1577 aa11.42□□□□□ -0.58
TPM3-214ENST00000466010 PLEKHG5O94827 1062 aa11.42□□□□□ -0.58
TPM3-214ENST00000466010 CHGAP10645 457 aaKnown RBP11.42□□□□□ -0.58
TPM3-214ENST00000466010 MIER1Q8N108 512 aa11.42□□□□□ -0.58
TPM3-214ENST00000466010 ZBTB47Q9UFB7 747 aaPredicted RBP11.42□□□□□ -0.58
TPM3-214ENST00000466010 CIZ1Q9ULV3 898 aaPredicted RBP11.39□□□□□ -0.59
TPM3-214ENST00000466010 SPDYE2BA6NHP3 402 aa11.38□□□□□ -0.59
TPM3-214ENST00000466010 SPDYE6P0CI01 402 aa11.38□□□□□ -0.59
TPM3-214ENST00000466010 SPDYE2Q495Y8 402 aa11.38□□□□□ -0.59
TPM3-214ENST00000466010 OSCARQ8IYS5 282 aa11.38□□□□□ -0.59
TPM3-214ENST00000466010 TRIM41Q8WV44 630 aa11.38□□□□□ -0.59
TPM3-214ENST00000466010 ABCB7O75027 752 aa11.37□□□□□ -0.59
TPM3-214ENST00000466010 RNF39Q9H2S5 420 aa11.36□□□□□ -0.59
TPM3-214ENST00000466010 C1QBPQ07021 282 aaKnown RBP11.34□□□□□ -0.59
TPM3-214ENST00000466010 SUPT5HO00267 1087 aaKnown RBP11.33□□□□□ -0.6
TPM3-214ENST00000466010 ZNF608Q9ULD9 1512 aaPredicted RBP11.32□□□□□ -0.6
TPM3-214ENST00000466010 SSUH2Q9Y2M2 353 aa11.32□□□□□ -0.6
TPM3-214ENST00000466010 POLA1P09884 1462 aaPredicted RBP11.32□□□□□ -0.6
TPM3-214ENST00000466010 WDR97A6NE52 1622 aa11.31□□□□□ -0.6
TPM3-214ENST00000466010 TARBP1Q13395 1621 aaKnown RBP11.3□□□□□ -0.6
TPM3-214ENST00000466010 EIF4G3O43432 1585 aaKnown RBP11.29□□□□□ -0.6
TPM3-214ENST00000466010 HS6ST3Q8IZP7 471 aa11.29□□□□□ -0.6
TPM3-214ENST00000466010 SOGA1O94964 1423 aa11.28□□□□□ -0.6
TPM3-214ENST00000466010 FGD5Q6ZNL6 1462 aa11.25□□□□□ -0.61
TPM3-214ENST00000466010 CUX1P39880 1505 aa11.25□□□□□ -0.61
TPM3-214ENST00000466010 AQRO60306 1485 aaKnown RBP eCLIP11.25□□□□□ -0.61
TPM3-214ENST00000466010 RAD54L2Q9Y4B4 1467 aa11.23□□□□□ -0.61
TPM3-214ENST00000466010 ERICH6Q7L0X2 663 aa11.22□□□□□ -0.61
TPM3-214ENST00000466010 TDRD9Q8NDG6 1382 aaKnown RBP11.21□□□□□ -0.61
TPM3-214ENST00000466010 MAGI1Q96QZ7 1491 aaPredicted RBP11.2□□□□□ -0.62
TPM3-214ENST00000466010 GSE1Q14687 1217 aa11.2□□□□□ -0.62
TPM3-214ENST00000466010 GRIN2BQ13224 1484 aa11.19□□□□□ -0.62
TPM3-214ENST00000466010 WRNQ14191 1432 aaPredicted RBP eCLIP11.19□□□□□ -0.62
TPM3-214ENST00000466010 ABCA10Q8WWZ4 1543 aa11.18□□□□□ -0.62
TPM3-214ENST00000466010 CHMP7Q8WUX9 453 aaPredicted RBP11.16□□□□□ -0.62
TPM3-214ENST00000466010 GAPVD1Q14C86 1478 aa11.16□□□□□ -0.62
TPM3-214ENST00000466010 SNAPC4Q5SXM2 1469 aa11.16□□□□□ -0.62
TPM3-214ENST00000466010 SYNJ2O15056 1496 aa11.15□□□□□ -0.62
TPM3-214ENST00000466010 TOP2BQ02880 1626 aa11.15□□□□□ -0.62
TPM3-214ENST00000466010 CHD1O14646 1710 aa11.15□□□□□ -0.63
TPM3-214ENST00000466010 ARHGEF11O15085 1522 aa11.14□□□□□ -0.63
TPM3-214ENST00000466010 TULP1O00294 542 aaPredicted RBP11.14□□□□□ -0.63
TPM3-214ENST00000466010 TIMELESSQ9UNS1 1208 aa11.13□□□□□ -0.63
TPM3-214ENST00000466010 GTF3C3Q9Y5Q9 886 aa11.13□□□□□ -0.63
TPM3-214ENST00000466010 RIMBP3CA6NJZ7 1639 aa11.13□□□□□ -0.63
TPM3-214ENST00000466010 RIMBP3BA6NNM3 1639 aa11.13□□□□□ -0.63
TPM3-214ENST00000466010 RIMBP3Q9UFD9 1639 aa11.13□□□□□ -0.63
TPM3-214ENST00000466010 BIVM-ERCC5R4GMW8 1640 aa11.13□□□□□ -0.63
TPM3-214ENST00000466010 SYNJ1O43426 1573 aa11.12□□□□□ -0.63
TPM3-214ENST00000466010 ABCA5Q8WWZ7 1642 aa11.12□□□□□ -0.63
TPM3-214ENST00000466010 DSG3P32926 999 aa11.11□□□□□ -0.63
TPM3-214ENST00000466010 PBRM1Q86U86 1689 aa11.09□□□□□ -0.63
TPM3-214ENST00000466010 RIOK3O14730 519 aaKnown RBP11.09□□□□□ -0.63
TPM3-214ENST00000466010 RNF25Q96BH1 459 aaPredicted RBP11.08□□□□□ -0.64
TPM3-214ENST00000466010 CLASP1Q7Z460 1538 aa11.08□□□□□ -0.64
TPM3-214ENST00000466010 RYDENQ9NUL5 291 aaKnown RBP11.07□□□□□ -0.64
TPM3-214ENST00000466010 ERICH3Q5RHP9 1530 aa11.06□□□□□ -0.64
TPM3-214ENST00000466010 GTPBP6O43824 516 aaPredicted RBP11.05□□□□□ -0.64
TPM3-214ENST00000466010 FHAD1B1AJZ9 1412 aa11.04□□□□□ -0.64
TPM3-214ENST00000466010 NKX1-1Q15270 411 aaPredicted RBP11.04□□□□□ -0.64
TPM3-214ENST00000466010 CYB5RLQ6IPT4 315 aa11.04□□□□□ -0.64
TPM3-214ENST00000466010 GRIN2AQ12879 1464 aa11.04□□□□□ -0.64
TPM3-214ENST00000466010 STK25O00506 426 aa11.03□□□□□ -0.64
TPM3-214ENST00000466010 TMEM132AQ24JP5 1023 aa11.03□□□□□ -0.64
TPM3-214ENST00000466010 DCAF8Q5TAQ9 597 aa11.03□□□□□ -0.64
TPM3-214ENST00000466010 ADAMTS12P58397 1594 aa11.03□□□□□ -0.64
TPM3-214ENST00000466010 ARAP1Q96P48 1450 aa11.02□□□□□ -0.65
TPM3-214ENST00000466010 VGFO15240 615 aaPredicted RBP11.02□□□□□ -0.65
TPM3-214ENST00000466010 P3H3Q8IVL6 736 aa11.01□□□□□ -0.65
TPM3-214ENST00000466010 ARXQ96QS3 562 aa11.01□□□□□ -0.65
TPM3-214ENST00000466010 NUP160Q12769 1436 aa11□□□□□ -0.65
TPM3-214ENST00000466010 NUBP1P53384 320 aa10.98□□□□□ -0.65
TPM3-214ENST00000466010 FAM212AQ96EL1 285 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms