RNA–Protein interactions for RNA: ENST00000466010.1

TPM3-214, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 461 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-214ENST00000466010 CHIC1Q5VXU3 224 aa19.3■□□□□ 0.68
TPM3-214ENST00000466010 AEBP2Q6ZN18 517 aaPredicted RBP18.8■□□□□ 0.6
TPM3-214ENST00000466010 PHF23Q9BUL5 403 aaPredicted RBP16.97■□□□□ 0.31
TPM3-214ENST00000466010 PLPPR3Q6T4P5 718 aa16.12■□□□□ 0.17
TPM3-214ENST00000466010 SENP3Q9H4L4 574 aaPredicted RBP15.96■□□□□ 0.15
TPM3-214ENST00000466010 NISCHQ9Y2I1 1504 aa15.6■□□□□ 0.09
TPM3-214ENST00000466010 EHMT2Q96KQ7 1210 aa14.95□□□□□ -0.02
TPM3-214ENST00000466010 ADRA2BP18089 450 aa14.91□□□□□ -0.02
TPM3-214ENST00000466010 KCNA4P22459 653 aa14.87□□□□□ -0.03
TPM3-214ENST00000466010 PPP6R1Q9UPN7 881 aa14.68□□□□□ -0.06
TPM3-214ENST00000466010 FOXD1Q16676 465 aa14.61□□□□□ -0.07
TPM3-214ENST00000466010 SLC4A1APQ9BWU0 796 aaKnown RBP14.39□□□□□ -0.11
TPM3-214ENST00000466010 CSRNP3Q8WYN3 585 aa14.32□□□□□ -0.12
TPM3-214ENST00000466010 PPP4R3CPQ6ZMV5 832 aa14.26□□□□□ -0.13
TPM3-214ENST00000466010 NCBP3Q53F19 620 aaKnown RBP14.23□□□□□ -0.13
TPM3-214ENST00000466010 PIAS4Q8N2W9 510 aaPredicted RBP14.07□□□□□ -0.16
TPM3-214ENST00000466010 CCDC180Q9P1Z9 1646 aa13.98□□□□□ -0.17
TPM3-214ENST00000466010 NPM3O75607 178 aaKnown RBP13.91□□□□□ -0.18
TPM3-214ENST00000466010 ABCC9O60706 1549 aa13.75□□□□□ -0.21
TPM3-214ENST00000466010 CNKSR2Q8WXI2 1034 aa13.71□□□□□ -0.21
TPM3-214ENST00000466010 SCAF1Q9H7N4 1312 aaKnown RBP13.65□□□□□ -0.22
TPM3-214ENST00000466010 ZBTB22O15209 634 aa13.64□□□□□ -0.23
TPM3-214ENST00000466010 FOXD4L1Q9NU39 408 aa13.52□□□□□ -0.25
TPM3-214ENST00000466010 SLC24A1O60721 1099 aa13.49□□□□□ -0.25
TPM3-214ENST00000466010 DNAJC5BQ9UF47 199 aa13.4□□□□□ -0.26
TPM3-214ENST00000466010 AMER1Q5JTC6 1135 aaPredicted RBP13.39□□□□□ -0.27
TPM3-214ENST00000466010 RTN4Q9NQC3 1192 aaKnown RBP13.28□□□□□ -0.28
TPM3-214ENST00000466010 MSH5O43196 834 aa13.25□□□□□ -0.29
TPM3-214ENST00000466010 RB1CC1Q8TDY2 1594 aa13.24□□□□□ -0.29
TPM3-214ENST00000466010 RNF216Q9NWF9 866 aaPredicted RBP13.22□□□□□ -0.29
TPM3-214ENST00000466010 NACADO15069 1562 aa13.2□□□□□ -0.3
TPM3-214ENST00000466010 MYO15BQ96JP2 1530 aa13.12□□□□□ -0.31
TPM3-214ENST00000466010 MAPK8IP2Q13387 824 aaPredicted RBP13.1□□□□□ -0.31
TPM3-214ENST00000466010 DCAF8L2P0C7V8 631 aa13.06□□□□□ -0.32
TPM3-214ENST00000466010 ATXN8OSP0DMR3 200 aa12.98□□□□□ -0.33
TPM3-214ENST00000466010 DCAF1Q9Y4B6 1507 aa12.98□□□□□ -0.33
TPM3-214ENST00000466010 ZCCHC6Q5VYS8 1495 aaKnown RBP12.97□□□□□ -0.33
TPM3-214ENST00000466010 FKBP8Q14318 412 aa12.96□□□□□ -0.33
TPM3-214ENST00000466010 MYCNP04198 464 aaPredicted RBP12.91□□□□□ -0.34
TPM3-214ENST00000466010 HOXD11P31277 338 aaPredicted RBP12.9□□□□□ -0.34
TPM3-214ENST00000466010 SLC4A2P04920 1241 aa12.88□□□□□ -0.35
TPM3-214ENST00000466010 DMRT2Q9Y5R5 561 aa12.83□□□□□ -0.36
TPM3-214ENST00000466010 UNC13AQ9UPW8 1703 aa12.81□□□□□ -0.36
TPM3-214ENST00000466010 SHROOM4Q9ULL8 1493 aa12.8□□□□□ -0.36
TPM3-214ENST00000466010 PABPN1Q86U42 306 aaKnown RBP eCLIP12.8□□□□□ -0.36
TPM3-214ENST00000466010 BICRAQ9NZM4 1560 aa12.77□□□□□ -0.37
TPM3-214ENST00000466010 SCRIBQ14160 1630 aa12.66□□□□□ -0.38
TPM3-214ENST00000466010 EIF4G1Q04637 1599 aaKnown RBP12.48□□□□□ -0.41
TPM3-214ENST00000466010 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.47□□□□□ -0.41
TPM3-214ENST00000466010 HNRNPUL2Q1KMD3 747 aaKnown RBP12.47□□□□□ -0.41
TPM3-214ENST00000466010 CC2D2AQ9P2K1 1620 aa12.45□□□□□ -0.42
TPM3-214ENST00000466010 CECR2Q9BXF3 1484 aa12.43□□□□□ -0.42
TPM3-214ENST00000466010 SAMD1Q6SPF0 538 aaPredicted RBP12.43□□□□□ -0.42
TPM3-214ENST00000466010 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.36□□□□□ -0.43
TPM3-214ENST00000466010 ATF5Q9Y2D1 282 aaPredicted RBP12.36□□□□□ -0.43
TPM3-214ENST00000466010 FBXO3Q9UK99 471 aa12.34□□□□□ -0.43
TPM3-214ENST00000466010 DCAF8L1A6NGE4 600 aa12.29□□□□□ -0.44
TPM3-214ENST00000466010 PLCB2Q00722 1185 aa12.27□□□□□ -0.45
TPM3-214ENST00000466010 U3KPZ7 1027 aaPredicted RBP12.18□□□□□ -0.46
TPM3-214ENST00000466010 NCAPD3P42695 1498 aa12.18□□□□□ -0.46
TPM3-214ENST00000466010 APLP2Q06481 763 aa12.17□□□□□ -0.46
TPM3-214ENST00000466010 SMARCA2P51531 1590 aa12.15□□□□□ -0.46
TPM3-214ENST00000466010 ZNF219Q9P2Y4 722 aaPredicted RBP12.15□□□□□ -0.46
TPM3-214ENST00000466010 BAZ1AQ9NRL2 1556 aaPredicted RBP12.14□□□□□ -0.47
TPM3-214ENST00000466010 SPDYE4A6NLX3 237 aa12.13□□□□□ -0.47
TPM3-214ENST00000466010 HAP1P54257 671 aaPredicted RBP12.13□□□□□ -0.47
TPM3-214ENST00000466010 SMARCA4P51532 1647 aa12.12□□□□□ -0.47
TPM3-214ENST00000466010 ATAD2BQ9ULI0 1458 aa12.12□□□□□ -0.47
TPM3-214ENST00000466010 HMGXB3Q12766 1538 aa12.11□□□□□ -0.47
TPM3-214ENST00000466010 VASPP50552 380 aaPredicted RBP12.08□□□□□ -0.48
TPM3-214ENST00000466010 BCANQ96GW7 911 aa12.08□□□□□ -0.48
TPM3-214ENST00000466010 PEG3Q9GZU2 1588 aa12.06□□□□□ -0.48
TPM3-214ENST00000466010 BAZ1BQ9UIG0 1483 aaKnown RBP12.03□□□□□ -0.48
TPM3-214ENST00000466010 PROM2Q8N271 834 aa12□□□□□ -0.49
TPM3-214ENST00000466010 MROH2BQ7Z745 1585 aa11.97□□□□□ -0.49
TPM3-214ENST00000466010 FBLN2P98095 1184 aa11.97□□□□□ -0.49
TPM3-214ENST00000466010 VSIG10Q8N0Z9 540 aa11.97□□□□□ -0.49
TPM3-214ENST00000466010 ERCC6Q03468 1493 aa11.95□□□□□ -0.5
TPM3-214ENST00000466010 IFNLR1Q8IU57 520 aaPredicted RBP11.92□□□□□ -0.5
TPM3-214ENST00000466010 CUX2O14529 1486 aa11.91□□□□□ -0.5
TPM3-214ENST00000466010 LAMC3Q9Y6N6 1575 aa11.88□□□□□ -0.51
TPM3-214ENST00000466010 MKRN4PQ13434 485 aaPredicted RBP11.88□□□□□ -0.51
TPM3-214ENST00000466010 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.86□□□□□ -0.51
TPM3-214ENST00000466010 TAOK2Q9UL54 1235 aa11.86□□□□□ -0.51
TPM3-214ENST00000466010 PKD2Q13563 968 aa11.85□□□□□ -0.51
TPM3-214ENST00000466010 PDS5BQ9NTI5 1447 aa11.84□□□□□ -0.51
TPM3-214ENST00000466010 NESP48681 1621 aa11.82□□□□□ -0.52
TPM3-214ENST00000466010 RSF1Q96T23 1441 aaPredicted RBP11.81□□□□□ -0.52
TPM3-214ENST00000466010 WIZO95785 1651 aa11.81□□□□□ -0.52
TPM3-214ENST00000466010 CADPSQ9ULU8 1353 aa11.8□□□□□ -0.52
TPM3-214ENST00000466010 PRKCSHP14314 528 aaPredicted RBP11.79□□□□□ -0.52
TPM3-214ENST00000466010 BBXQ8WY36 941 aaPredicted RBP11.78□□□□□ -0.52
TPM3-214ENST00000466010 TOP2AP11388 1531 aaKnown RBP11.75□□□□□ -0.53
TPM3-214ENST00000466010 THOC2Q8NI27 1593 aaKnown RBP11.72□□□□□ -0.53
TPM3-214ENST00000466010 KLHL34Q8N239 644 aa11.72□□□□□ -0.53
TPM3-214ENST00000466010 SPOCK2Q92563 424 aa11.72□□□□□ -0.53
TPM3-214ENST00000466010 DNAJC5Q9H3Z4 198 aa11.71□□□□□ -0.53
TPM3-214ENST00000466010 ECM2O94769 699 aaPredicted RBP11.7□□□□□ -0.54
TPM3-214ENST00000466010 TRHP20396 242 aaPredicted RBP11.7□□□□□ -0.54
TPM3-214ENST00000466010 CFTRP13569 1480 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms