RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 RAD54L2Q9Y4B4 1467 aa5.37□□□□□ -1.55
USP40-211ENST00000464956 DNMBPQ6XZF7 1577 aa5.37□□□□□ -1.55
USP40-211ENST00000464956 PRG4Q92954 1404 aaPredicted RBP5.35□□□□□ -1.55
USP40-211ENST00000464956 WDR97A6NE52 1622 aa5.34□□□□□ -1.55
USP40-211ENST00000464956 TEX14Q8IWB6 1497 aa5.34□□□□□ -1.55
USP40-211ENST00000464956 TSPOAP1O95153 1857 aa5.32□□□□□ -1.56
USP40-211ENST00000464956 NUP160Q12769 1436 aa5.32□□□□□ -1.56
USP40-211ENST00000464956 JPH4Q96JJ6 628 aa5.32□□□□□ -1.56
USP40-211ENST00000464956 MED1Q15648 1581 aaPredicted RBP5.31□□□□□ -1.56
USP40-211ENST00000464956 UBAP1LF5GYI3 381 aa5.31□□□□□ -1.56
USP40-211ENST00000464956 GRIN2AQ12879 1464 aa5.31□□□□□ -1.56
USP40-211ENST00000464956 IQSEC2Q5JU85 1478 aa5.3□□□□□ -1.56
USP40-211ENST00000464956 PLB1Q6P1J6 1458 aa5.3□□□□□ -1.56
USP40-211ENST00000464956 IFFO2Q5TF58 517 aa5.29□□□□□ -1.56
USP40-211ENST00000464956 YEATS2Q9ULM3 1422 aa5.29□□□□□ -1.56
USP40-211ENST00000464956 ARID4BQ4LE39 1312 aaPredicted RBP5.28□□□□□ -1.56
USP40-211ENST00000464956 SHROOM2Q13796 1616 aa5.28□□□□□ -1.56
USP40-211ENST00000464956 PLPPR3Q6T4P5 718 aa5.28□□□□□ -1.56
USP40-211ENST00000464956 ASXL2Q76L83 1435 aa5.28□□□□□ -1.56
USP40-211ENST00000464956 GLI2P10070 1586 aa5.28□□□□□ -1.56
USP40-211ENST00000464956 ADCY10Q96PN6 1610 aa5.27□□□□□ -1.57
USP40-211ENST00000464956 HSPA1LP34931 641 aa5.26□□□□□ -1.57
USP40-211ENST00000464956 SCAF1Q9H7N4 1312 aaKnown RBP5.25□□□□□ -1.57
USP40-211ENST00000464956 PTPRTO14522 1441 aa5.25□□□□□ -1.57
USP40-211ENST00000464956 FGD5Q6ZNL6 1462 aa5.25□□□□□ -1.57
USP40-211ENST00000464956 WIZO95785 1651 aa5.24□□□□□ -1.57
USP40-211ENST00000464956 KIAA0586Q9BVV6 1533 aa5.24□□□□□ -1.57
USP40-211ENST00000464956 ADAMTSL3P82987 1691 aa5.24□□□□□ -1.57
USP40-211ENST00000464956 PPRC1Q5VV67 1664 aaKnown RBP5.24□□□□□ -1.57
USP40-211ENST00000464956 KIF21BO75037 1637 aa5.23□□□□□ -1.57
USP40-211ENST00000464956 EPRSP07814 1512 aaKnown RBP5.23□□□□□ -1.57
USP40-211ENST00000464956 ABCC2Q92887 1545 aa5.23□□□□□ -1.57
USP40-211ENST00000464956 FHAD1B1AJZ9 1412 aa5.22□□□□□ -1.57
USP40-211ENST00000464956 PIP4K2BP78356 416 aa5.21□□□□□ -1.58
USP40-211ENST00000464956 TOP2AP11388 1531 aaKnown RBP5.21□□□□□ -1.58
USP40-211ENST00000464956 PTPRGP23470 1445 aa5.21□□□□□ -1.58
USP40-211ENST00000464956 PRDM2Q13029 1718 aa5.2□□□□□ -1.58
USP40-211ENST00000464956 TOM1O60784 492 aa5.2□□□□□ -1.58
USP40-211ENST00000464956 TTBK1Q5TCY1 1321 aaPredicted RBP5.2□□□□□ -1.58
USP40-211ENST00000464956 LTBP4Q8N2S1 1624 aa5.19□□□□□ -1.58
USP40-211ENST00000464956 RGS17Q9UGC6 210 aaPredicted RBP5.19□□□□□ -1.58
USP40-211ENST00000464956 MADDQ8WXG6 1647 aa5.19□□□□□ -1.58
USP40-211ENST00000464956 CD109Q6YHK3 1445 aa5.18□□□□□ -1.58
USP40-211ENST00000464956 MAP3K4Q9Y6R4 1608 aa5.18□□□□□ -1.58
USP40-211ENST00000464956 CCDC88BA6NC98 1476 aa5.18□□□□□ -1.58
USP40-211ENST00000464956 ADAMTS12P58397 1594 aa5.17□□□□□ -1.58
USP40-211ENST00000464956 POGZQ7Z3K3 1410 aa5.17□□□□□ -1.58
USP40-211ENST00000464956 PBRM1Q86U86 1689 aa5.17□□□□□ -1.58
USP40-211ENST00000464956 MAGI3Q5TCQ9 1506 aa5.17□□□□□ -1.58
USP40-211ENST00000464956 ABCA10Q8WWZ4 1543 aa5.17□□□□□ -1.58
USP40-211ENST00000464956 POTEAQ6S8J7 498 aa5.16□□□□□ -1.58
USP40-211ENST00000464956 UPF1Q92900 1129 aaKnown RBP eCLIP5.16□□□□□ -1.58
USP40-211ENST00000464956 UHRF1BP1Q6BDS2 1440 aa5.15□□□□□ -1.58
USP40-211ENST00000464956 CFAP43Q8NDM7 1665 aa5.15□□□□□ -1.58
USP40-211ENST00000464956 BCORL1Q5H9F3 1711 aa5.15□□□□□ -1.58
USP40-211ENST00000464956 FOXD1Q16676 465 aa5.15□□□□□ -1.59
USP40-211ENST00000464956 ZNF335Q9H4Z2 1342 aaPredicted RBP5.15□□□□□ -1.59
USP40-211ENST00000464956 ARAP3Q8WWN8 1544 aa5.14□□□□□ -1.59
USP40-211ENST00000464956 RAPGEF3O95398 923 aa5.14□□□□□ -1.59
USP40-211ENST00000464956 ABCA5Q8WWZ7 1642 aa5.14□□□□□ -1.59
USP40-211ENST00000464956 PHLDB1Q86UU1 1377 aa5.14□□□□□ -1.59
USP40-211ENST00000464956 TNIKQ9UKE5 1360 aa5.14□□□□□ -1.59
USP40-211ENST00000464956 UHRF1BP1LA0JNW5 1464 aa5.13□□□□□ -1.59
USP40-211ENST00000464956 RIMS1Q86UR5 1692 aaKnown RBP5.13□□□□□ -1.59
USP40-211ENST00000464956 UACAQ9BZF9 1416 aa5.13□□□□□ -1.59
USP40-211ENST00000464956 RBM33Q96EV2 1170 aaKnown RBP5.12□□□□□ -1.59
USP40-211ENST00000464956 KCNH8Q96L42 1107 aa5.12□□□□□ -1.59
USP40-211ENST00000464956 CARMIL2Q6F5E8 1435 aa5.12□□□□□ -1.59
USP40-211ENST00000464956 WDR7Q9Y4E6 1490 aa5.12□□□□□ -1.59
USP40-211ENST00000464956 CUX1P39880 1505 aa5.12□□□□□ -1.59
USP40-211ENST00000464956 MLECQ14165 292 aa5.11□□□□□ -1.59
USP40-211ENST00000464956 SENP3Q9H4L4 574 aaPredicted RBP5.11□□□□□ -1.59
USP40-211ENST00000464956 FANCAO15360 1455 aa5.11□□□□□ -1.59
USP40-211ENST00000464956 KDM5BQ9UGL1 1544 aa5.11□□□□□ -1.59
USP40-211ENST00000464956 CEBPAP49715 358 aaPredicted RBP5.1□□□□□ -1.59
USP40-211ENST00000464956 RUSC2Q8N2Y8 1516 aa5.1□□□□□ -1.59
USP40-211ENST00000464956 NCOA1Q15788 1441 aa5.09□□□□□ -1.59
USP40-211ENST00000464956 ZRANB1Q9UGI0 708 aa5.09□□□□□ -1.59
USP40-211ENST00000464956 STRCQ7RTU9 1775 aa5.09□□□□□ -1.6
USP40-211ENST00000464956 PTPRKQ15262 1439 aa5.08□□□□□ -1.6
USP40-211ENST00000464956 AKNAQ7Z591 1439 aa5.08□□□□□ -1.6
USP40-211ENST00000464956 ERICH3Q5RHP9 1530 aa5.07□□□□□ -1.6
USP40-211ENST00000464956 WRNQ14191 1432 aaPredicted RBP eCLIP5.07□□□□□ -1.6
USP40-211ENST00000464956 PKD2Q13563 968 aa5.07□□□□□ -1.6
USP40-211ENST00000464956 PREX1Q8TCU6 1659 aa5.07□□□□□ -1.6
USP40-211ENST00000464956 TTC37Q6PGP7 1564 aa5.07□□□□□ -1.6
USP40-211ENST00000464956 CUL7Q14999 1698 aa5.05□□□□□ -1.6
USP40-211ENST00000464956 NCKAP5LQ9HCH0 1330 aa5.05□□□□□ -1.6
USP40-211ENST00000464956 TRIM52Q96A61 297 aa5.05□□□□□ -1.6
USP40-211ENST00000464956 PPP6R1Q9UPN7 881 aa5.05□□□□□ -1.6
USP40-211ENST00000464956 KIAA0556O60303 1618 aa5.05□□□□□ -1.6
USP40-211ENST00000464956 ARHGEF40Q8TER5 1519 aa5.04□□□□□ -1.6
USP40-211ENST00000464956 YY1P25490 414 aa5.04□□□□□ -1.6
USP40-211ENST00000464956 NEO1Q92859 1461 aa5.03□□□□□ -1.6
USP40-211ENST00000464956 SENP3-EIF4A1A0A087X0R7 540 aa5.03□□□□□ -1.6
USP40-211ENST00000464956 ESF1Q9H501 851 aaKnown RBP5.02□□□□□ -1.61
USP40-211ENST00000464956 TRAPPC8Q9Y2L5 1435 aa5.02□□□□□ -1.61
USP40-211ENST00000464956 CPS1P31327 1500 aa5.02□□□□□ -1.61
USP40-211ENST00000464956 ZNF772Q68DY9 489 aaPredicted RBP5.01□□□□□ -1.61
USP40-211ENST00000464956 ZCCHC11Q5TAX3 1644 aaKnown RBP5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms