RNA–Protein interactions for RNA: ENST00000462616.1

PMPCA-205, Transcript of peptidase, mitochondrial processing alpha subunit, humanhuman

TSL 2

Gene PMPCA, Length 3,341 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMPCA-205ENST00000462616 SIN3AQ96ST3 1273 aa18.85■□□□□ 0.61
PMPCA-205ENST00000462616 DNMBPQ6XZF7 1577 aa18.84■□□□□ 0.61
PMPCA-205ENST00000462616 CUX1P39880 1505 aa18.83■□□□□ 0.61
PMPCA-205ENST00000462616 FAM50AQ14320 339 aaKnown RBP18.81■□□□□ 0.6
PMPCA-205ENST00000462616 BCL11AQ9H165 835 aa18.79■□□□□ 0.6
PMPCA-205ENST00000462616 THOC2Q8NI27 1593 aaKnown RBP18.78■□□□□ 0.6
PMPCA-205ENST00000462616 CCNB3Q8WWL7 1395 aa18.78■□□□□ 0.6
PMPCA-205ENST00000462616 WDR62O43379 1518 aa18.77■□□□□ 0.59
PMPCA-205ENST00000462616 MRC2Q9UBG0 1479 aa18.77■□□□□ 0.59
PMPCA-205ENST00000462616 URB2Q14146 1524 aaKnown RBP18.75■□□□□ 0.59
PMPCA-205ENST00000462616 TOPBP1Q92547 1522 aa18.75■□□□□ 0.59
PMPCA-205ENST00000462616 RBM19Q9Y4C8 960 aaKnown RBP18.74■□□□□ 0.59
PMPCA-205ENST00000462616 RAB3GAP2Q9H2M9 1393 aa18.74■□□□□ 0.59
PMPCA-205ENST00000462616 ARAP1Q96P48 1450 aa18.73■□□□□ 0.59
PMPCA-205ENST00000462616 P3H3Q8IVL6 736 aa18.71■□□□□ 0.59
PMPCA-205ENST00000462616 IRX6P78412 446 aaPredicted RBP18.69■□□□□ 0.58
PMPCA-205ENST00000462616 ANP32CO43423 234 aa18.69■□□□□ 0.58
PMPCA-205ENST00000462616 WDR97A6NE52 1622 aa18.66■□□□□ 0.58
PMPCA-205ENST00000462616 RRBP1Q9P2E9 1410 aaKnown RBP18.65■□□□□ 0.58
PMPCA-205ENST00000462616 ERCC6Q03468 1493 aa18.65■□□□□ 0.58
PMPCA-205ENST00000462616 FGD5Q6ZNL6 1462 aa18.63■□□□□ 0.57
PMPCA-205ENST00000462616 POLA1P09884 1462 aaPredicted RBP18.61■□□□□ 0.57
PMPCA-205ENST00000462616 PRXQ9BXM0 1461 aa18.59■□□□□ 0.57
PMPCA-205ENST00000462616 TARBP1Q13395 1621 aaKnown RBP18.58■□□□□ 0.57
PMPCA-205ENST00000462616 ERICH6Q7L0X2 663 aa18.58■□□□□ 0.57
PMPCA-205ENST00000462616 PPP1R15AO75807 674 aaPredicted RBP18.58■□□□□ 0.56
PMPCA-205ENST00000462616 ABCA10Q8WWZ4 1543 aa18.57■□□□□ 0.56
PMPCA-205ENST00000462616 SETD5Q9C0A6 1442 aa18.56■□□□□ 0.56
PMPCA-205ENST00000462616 HNRNPUQ00839 825 aaKnown RBP eCLIP18.55■□□□□ 0.56
PMPCA-205ENST00000462616 KIF27Q86VH2 1401 aa18.55■□□□□ 0.56
PMPCA-205ENST00000462616 ARHGAP35Q9NRY4 1499 aa18.53■□□□□ 0.56
PMPCA-205ENST00000462616 MAPKBP1O60336 1514 aa18.52■□□□□ 0.56
PMPCA-205ENST00000462616 CUX2O14529 1486 aa18.52■□□□□ 0.56
PMPCA-205ENST00000462616 IFT140Q96RY7 1462 aa18.51■□□□□ 0.55
PMPCA-205ENST00000462616 ABCA5Q8WWZ7 1642 aa18.5■□□□□ 0.55
PMPCA-205ENST00000462616 MSH5O43196 834 aa18.5■□□□□ 0.55
PMPCA-205ENST00000462616 ERICH3Q5RHP9 1530 aa18.5■□□□□ 0.55
PMPCA-205ENST00000462616 PHLDB1Q86UU1 1377 aa18.48■□□□□ 0.55
PMPCA-205ENST00000462616 CDK11AQ9UQ88 783 aaPredicted RBP18.48■□□□□ 0.55
PMPCA-205ENST00000462616 CCER2I3L3R5 266 aa18.47■□□□□ 0.55
PMPCA-205ENST00000462616 TONSLQ96HA7 1378 aa18.45■□□□□ 0.54
PMPCA-205ENST00000462616 CNGB1Q14028 1251 aaPredicted RBP18.44■□□□□ 0.54
PMPCA-205ENST00000462616 RAD54L2Q9Y4B4 1467 aa18.43■□□□□ 0.54
PMPCA-205ENST00000462616 PBRM1Q86U86 1689 aa18.38■□□□□ 0.53
PMPCA-205ENST00000462616 CUL7Q14999 1698 aa18.37■□□□□ 0.53
PMPCA-205ENST00000462616 FAM9BQ8IZU0 186 aa18.35■□□□□ 0.53
PMPCA-205ENST00000462616 EIF4G3O43432 1585 aaKnown RBP18.34■□□□□ 0.53
PMPCA-205ENST00000462616 LRRC9Q6ZRR7 1453 aa18.34■□□□□ 0.53
PMPCA-205ENST00000462616 CARMIL1Q5VZK9 1371 aa18.33■□□□□ 0.53
PMPCA-205ENST00000462616 TIMELESSQ9UNS1 1208 aa18.33■□□□□ 0.53
PMPCA-205ENST00000462616 IGF1RP08069 1367 aa18.33■□□□□ 0.52
PMPCA-205ENST00000462616 B4GALNT3Q6L9W6 998 aa18.31■□□□□ 0.52
PMPCA-205ENST00000462616 GAPVD1Q14C86 1478 aa18.31■□□□□ 0.52
PMPCA-205ENST00000462616 TIAM1Q13009 1591 aa18.31■□□□□ 0.52
PMPCA-205ENST00000462616 SENP3-EIF4A1A0A087X0R7 540 aa18.3■□□□□ 0.52
PMPCA-205ENST00000462616 CHIC2Q9UKJ5 165 aa18.29■□□□□ 0.52
PMPCA-205ENST00000462616 CCDC184Q52MB2 194 aa18.27■□□□□ 0.51
PMPCA-205ENST00000462616 GRIN2BQ13224 1484 aa18.26■□□□□ 0.51
PMPCA-205ENST00000462616 FHOD3Q2V2M9 1422 aa18.26■□□□□ 0.51
PMPCA-205ENST00000462616 ZNF608Q9ULD9 1512 aaPredicted RBP18.26■□□□□ 0.51
PMPCA-205ENST00000462616 NBR1Q14596 966 aa18.25■□□□□ 0.51
PMPCA-205ENST00000462616 RRP7BPQ9NSQ0 103 aa18.25■□□□□ 0.51
PMPCA-205ENST00000462616 ADAMTS12P58397 1594 aa18.25■□□□□ 0.51
PMPCA-205ENST00000462616 HSPA5P11021 654 aaKnown RBP18.24■□□□□ 0.51
PMPCA-205ENST00000462616 FANCIQ9NVI1 1328 aa18.23■□□□□ 0.51
PMPCA-205ENST00000462616 PRKCSHP14314 528 aaPredicted RBP18.23■□□□□ 0.51
PMPCA-205ENST00000462616 POLR3GLQ9BT43 218 aa18.22■□□□□ 0.51
PMPCA-205ENST00000462616 FHAD1B1AJZ9 1412 aa18.21■□□□□ 0.51
PMPCA-205ENST00000462616 MAGI1Q96QZ7 1491 aaPredicted RBP18.21■□□□□ 0.51
PMPCA-205ENST00000462616 PPP4R2Q9NY27 417 aa18.21■□□□□ 0.51
PMPCA-205ENST00000462616 MRS2Q9HD23 443 aa18.21■□□□□ 0.51
PMPCA-205ENST00000462616 TDRD9Q8NDG6 1382 aaKnown RBP18.21■□□□□ 0.5
PMPCA-205ENST00000462616 AQRO60306 1485 aaKnown RBP eCLIP18.19■□□□□ 0.52e-6■■■■□ 23
PMPCA-205ENST00000462616 MTUS2Q5JR59 1369 aa18.19■□□□□ 0.5
PMPCA-205ENST00000462616 WASHC2AQ641Q2 1341 aa18.19■□□□□ 0.5
PMPCA-205ENST00000462616 ARID3CA6NKF2 412 aa18.17■□□□□ 0.5
PMPCA-205ENST00000462616 FOXD1Q16676 465 aa18.17■□□□□ 0.5
PMPCA-205ENST00000462616 DEKP35659 375 aaKnown RBP18.16■□□□□ 0.5
PMPCA-205ENST00000462616 CCDC18Q5T9S5 1454 aa18.15■□□□□ 0.5
PMPCA-205ENST00000462616 EIF4G2P78344 907 aaKnown RBP eCLIP18.15■□□□□ 0.5
PMPCA-205ENST00000462616 PCF11O94913 1555 aaKnown RBP18.12■□□□□ 0.49
PMPCA-205ENST00000462616 SNAPC4Q5SXM2 1469 aa18.11■□□□□ 0.49
PMPCA-205ENST00000462616 CTTNBP2Q8WZ74 1663 aa18.1■□□□□ 0.49
PMPCA-205ENST00000462616 MAP3K1Q13233 1512 aa18.1■□□□□ 0.49
PMPCA-205ENST00000462616 SYNJ2O15056 1496 aa18.09■□□□□ 0.49
PMPCA-205ENST00000462616 PTPRKQ15262 1439 aa18.09■□□□□ 0.49
PMPCA-205ENST00000462616 FGD6Q6ZV73 1430 aa18.09■□□□□ 0.49
PMPCA-205ENST00000462616 C11orf95C9JLR9 678 aaPredicted RBP18.09■□□□□ 0.49
PMPCA-205ENST00000462616 UACAQ9BZF9 1416 aa18.07■□□□□ 0.48
PMPCA-205ENST00000462616 PAK3O75914 559 aaPredicted RBP18.06■□□□□ 0.48
PMPCA-205ENST00000462616 PRKRIP1Q9H875 184 aaPredicted RBP18.06■□□□□ 0.48
PMPCA-205ENST00000462616 L3MBTL2Q969R5 705 aa18.06■□□□□ 0.48
PMPCA-205ENST00000462616 NOP58Q9Y2X3 529 aaKnown RBP18.05■□□□□ 0.48
PMPCA-205ENST00000462616 ZNF326Q5BKZ1 582 aaKnown RBP18.05■□□□□ 0.48
PMPCA-205ENST00000462616 GRIN2AQ12879 1464 aa18.04■□□□□ 0.48
PMPCA-205ENST00000462616 CCDC136Q96JN2 1154 aa18.03■□□□□ 0.48
PMPCA-205ENST00000462616 ERICH6BQ5W0A0 696 aa18■□□□□ 0.47
PMPCA-205ENST00000462616 HFM1A2PYH4 1435 aa18■□□□□ 0.47
PMPCA-205ENST00000462616 CHD1O14646 1710 aa18■□□□□ 0.47
PMPCA-205ENST00000462616 NAIPQ13075 1403 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms