RNA–Protein interactions for RNA: ENST00000461115.5

IFT88-204, Transcript of intraflagellar transport 88, humanhuman

TSL 2

Gene IFT88, Length 1,440 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-204ENST00000461115 MRC2Q9UBG0 1479 aa17.13■□□□□ 0.33
IFT88-204ENST00000461115 CUL7Q14999 1698 aa17.13■□□□□ 0.33
IFT88-204ENST00000461115 TARBP1Q13395 1621 aaKnown RBP17.12■□□□□ 0.33
IFT88-204ENST00000461115 PCGF6Q9BYE7 350 aa17.11■□□□□ 0.33
IFT88-204ENST00000461115 CARMIL1Q5VZK9 1371 aa17.1■□□□□ 0.33
IFT88-204ENST00000461115 RNF39Q9H2S5 420 aa17.1■□□□□ 0.33
IFT88-204ENST00000461115 WDR62O43379 1518 aa17.09■□□□□ 0.33
IFT88-204ENST00000461115 VPS8Q8N3P4 1428 aa17.08■□□□□ 0.32
IFT88-204ENST00000461115 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.06■□□□□ 0.32
IFT88-204ENST00000461115 GAPVD1Q14C86 1478 aa17.01■□□□□ 0.31
IFT88-204ENST00000461115 ARAP1Q96P48 1450 aa17■□□□□ 0.31
IFT88-204ENST00000461115 THOC2Q8NI27 1593 aaKnown RBP16.99■□□□□ 0.31
IFT88-204ENST00000461115 ARHGAP35Q9NRY4 1499 aa16.98■□□□□ 0.31
IFT88-204ENST00000461115 IFT140Q96RY7 1462 aa16.96■□□□□ 0.31
IFT88-204ENST00000461115 C1QBPQ07021 282 aaKnown RBP16.96■□□□□ 0.3
IFT88-204ENST00000461115 CTTNBP2Q8WZ74 1663 aa16.95■□□□□ 0.3
IFT88-204ENST00000461115 PBRM1Q86U86 1689 aa16.95■□□□□ 0.3
IFT88-204ENST00000461115 TDRD9Q8NDG6 1382 aaKnown RBP16.93■□□□□ 0.3
IFT88-204ENST00000461115 HRCP23327 699 aa16.89■□□□□ 0.29
IFT88-204ENST00000461115 EFCAB5A4FU69 1503 aa16.89■□□□□ 0.29
IFT88-204ENST00000461115 ADAMTS12P58397 1594 aa16.87■□□□□ 0.29
IFT88-204ENST00000461115 ERCC6Q03468 1493 aa16.87■□□□□ 0.29
IFT88-204ENST00000461115 MAP3K1Q13233 1512 aa16.86■□□□□ 0.29
IFT88-204ENST00000461115 GRIN2BQ13224 1484 aa16.86■□□□□ 0.29
IFT88-204ENST00000461115 FHAD1B1AJZ9 1412 aa16.85■□□□□ 0.29
IFT88-204ENST00000461115 SAMD9Q5K651 1589 aa16.82■□□□□ 0.28
IFT88-204ENST00000461115 AQRO60306 1485 aaKnown RBP eCLIP16.81■□□□□ 0.28
IFT88-204ENST00000461115 ZNF608Q9ULD9 1512 aaPredicted RBP16.79■□□□□ 0.28
IFT88-204ENST00000461115 EIF4G3O43432 1585 aaKnown RBP16.79■□□□□ 0.28
IFT88-204ENST00000461115 PPARGC1BQ86YN6 1023 aaKnown RBP16.78■□□□□ 0.28
IFT88-204ENST00000461115 APLP2Q06481 763 aa16.73■□□□□ 0.27
IFT88-204ENST00000461115 MAGI1Q96QZ7 1491 aaPredicted RBP16.73■□□□□ 0.27
IFT88-204ENST00000461115 TIAM1Q13009 1591 aa16.72■□□□□ 0.27
IFT88-204ENST00000461115 CFAP43Q8NDM7 1665 aa16.71■□□□□ 0.27
IFT88-204ENST00000461115 RANGAP1P46060 587 aaPredicted RBP16.7■□□□□ 0.26
IFT88-204ENST00000461115 FYCO1Q9BQS8 1478 aa16.7■□□□□ 0.26
IFT88-204ENST00000461115 IQGAP2Q13576 1575 aa16.7■□□□□ 0.26
IFT88-204ENST00000461115 FMN1Q68DA7 1419 aa16.69■□□□□ 0.26
IFT88-204ENST00000461115 CASKIN1Q8WXD9 1431 aa16.69■□□□□ 0.26
IFT88-204ENST00000461115 PCF11O94913 1555 aaKnown RBP16.69■□□□□ 0.26
IFT88-204ENST00000461115 UGGT2Q9NYU1 1516 aa16.68■□□□□ 0.26
IFT88-204ENST00000461115 SNAPC4Q5SXM2 1469 aa16.67■□□□□ 0.26
IFT88-204ENST00000461115 FHOD3Q2V2M9 1422 aa16.66■□□□□ 0.26
IFT88-204ENST00000461115 GRIN2AQ12879 1464 aa16.66■□□□□ 0.26
IFT88-204ENST00000461115 KIAA0586Q9BVV6 1533 aa16.65■□□□□ 0.26
IFT88-204ENST00000461115 SYNJ2O15056 1496 aa16.65■□□□□ 0.26
IFT88-204ENST00000461115 RRBP1Q9P2E9 1410 aaKnown RBP16.64■□□□□ 0.25
IFT88-204ENST00000461115 ZEB1P37275 1124 aaPredicted RBP16.63■□□□□ 0.25
IFT88-204ENST00000461115 KANK4Q5T7N3 995 aaPredicted RBP16.63■□□□□ 0.25
IFT88-204ENST00000461115 LRRC9Q6ZRR7 1453 aa16.62■□□□□ 0.25
IFT88-204ENST00000461115 NUP160Q12769 1436 aa16.59■□□□□ 0.25
IFT88-204ENST00000461115 LRRIQ1Q96JM4 1722 aa16.57■□□□□ 0.24
IFT88-204ENST00000461115 U3KPZ7 1027 aaPredicted RBP16.56■□□□□ 0.24
IFT88-204ENST00000461115 CEP170Q5SW79 1584 aa16.56■□□□□ 0.24
IFT88-204ENST00000461115 KIAA0556O60303 1618 aa16.54■□□□□ 0.24
IFT88-204ENST00000461115 DISP1Q96F81 1524 aa16.54■□□□□ 0.24
IFT88-204ENST00000461115 TTBK1Q5TCY1 1321 aaPredicted RBP16.54■□□□□ 0.24
IFT88-204ENST00000461115 P3H3Q8IVL6 736 aa16.52■□□□□ 0.23
IFT88-204ENST00000461115 SLC4A2P04920 1241 aa16.51■□□□□ 0.23
IFT88-204ENST00000461115 HECW1Q76N89 1606 aa16.5■□□□□ 0.23
IFT88-204ENST00000461115 CCDC18Q5T9S5 1454 aa16.5■□□□□ 0.23
IFT88-204ENST00000461115 CCNB3Q8WWL7 1395 aa16.49■□□□□ 0.23
IFT88-204ENST00000461115 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.48■□□□□ 0.23
IFT88-204ENST00000461115 CHMP7Q8WUX9 453 aaPredicted RBP16.46■□□□□ 0.23
IFT88-204ENST00000461115 PHLDB1Q86UU1 1377 aa16.45■□□□□ 0.22
IFT88-204ENST00000461115 ARHGEF11O15085 1522 aa16.45■□□□□ 0.22
IFT88-204ENST00000461115 EHBP1L1Q8N3D4 1523 aa16.45■□□□□ 0.22
IFT88-204ENST00000461115 SLC4A1APQ9BWU0 796 aaKnown RBP16.43■□□□□ 0.22
IFT88-204ENST00000461115 EPRSP07814 1512 aaKnown RBP16.42■□□□□ 0.22
IFT88-204ENST00000461115 SUPT6HQ7KZ85 1726 aaKnown RBP16.41■□□□□ 0.22
IFT88-204ENST00000461115 CHD1O14646 1710 aa16.4■□□□□ 0.22
IFT88-204ENST00000461115 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.4■□□□□ 0.22
IFT88-204ENST00000461115 RAPGEF6Q8TEU7 1601 aa16.39■□□□□ 0.21
IFT88-204ENST00000461115 MAGI3Q5TCQ9 1506 aa16.38■□□□□ 0.21
IFT88-204ENST00000461115 SHROOM2Q13796 1616 aa16.38■□□□□ 0.21
IFT88-204ENST00000461115 CARMIL2Q6F5E8 1435 aa16.37■□□□□ 0.21
IFT88-204ENST00000461115 CAPN15O75808 1086 aa16.36■□□□□ 0.21
IFT88-204ENST00000461115 HNRNPUL2Q1KMD3 747 aaKnown RBP16.36■□□□□ 0.21
IFT88-204ENST00000461115 CCER1Q8TC90 406 aaPredicted RBP16.36■□□□□ 0.21
IFT88-204ENST00000461115 MTUS2Q5JR59 1369 aa16.36■□□□□ 0.21
IFT88-204ENST00000461115 NCOA2Q15596 1464 aa16.36■□□□□ 0.21
IFT88-204ENST00000461115 NUP153P49790 1475 aaKnown RBP16.35■□□□□ 0.21
IFT88-204ENST00000461115 JPH4Q96JJ6 628 aa16.35■□□□□ 0.21
IFT88-204ENST00000461115 FGD6Q6ZV73 1430 aa16.34■□□□□ 0.21
IFT88-204ENST00000461115 MYOM3Q5VTT5 1437 aa16.33■□□□□ 0.2
IFT88-204ENST00000461115 ABCA8O94911 1581 aa16.32■□□□□ 0.2
IFT88-204ENST00000461115 CLSPNQ9HAW4 1339 aa16.32■□□□□ 0.2
IFT88-204ENST00000461115 ATP1B4Q9UN42 357 aaPredicted RBP16.31■□□□□ 0.2
IFT88-204ENST00000461115 CDK13Q14004 1512 aaKnown RBP16.3■□□□□ 0.2
IFT88-204ENST00000461115 TCOF1Q13428 1488 aaKnown RBP16.29■□□□□ 0.2
IFT88-204ENST00000461115 FBLN2P98095 1184 aa16.28■□□□□ 0.2
IFT88-204ENST00000461115 MIA2Q96PC5 1412 aa16.27■□□□□ 0.19
IFT88-204ENST00000461115 SPINK5Q9NQ38 1064 aaPredicted RBP16.27■□□□□ 0.19
IFT88-204ENST00000461115 ADCY10Q96PN6 1610 aa16.27■□□□□ 0.19
IFT88-204ENST00000461115 CLASP1Q7Z460 1538 aa16.26■□□□□ 0.19
IFT88-204ENST00000461115 DHX57Q6P158 1386 aaKnown RBP16.24■□□□□ 0.19
IFT88-204ENST00000461115 PLB1Q6P1J6 1458 aa16.24■□□□□ 0.19
IFT88-204ENST00000461115 SAMD1Q6SPF0 538 aaPredicted RBP16.24■□□□□ 0.19
IFT88-204ENST00000461115 PTPN23Q9H3S7 1636 aa16.24■□□□□ 0.19
IFT88-204ENST00000461115 PRG4Q92954 1404 aaPredicted RBP16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms