RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 TRIM52Q96A61 297 aa17.27■□□□□ 0.36
SMPD4-213ENST00000454468 CNGB1Q14028 1251 aaPredicted RBP17.27■□□□□ 0.35
SMPD4-213ENST00000454468 FHOD3Q2V2M9 1422 aa17.26■□□□□ 0.35
SMPD4-213ENST00000454468 CC2D2AQ9P2K1 1620 aa17.26■□□□□ 0.35
SMPD4-213ENST00000454468 MTUS2Q5JR59 1369 aa17.22■□□□□ 0.35
SMPD4-213ENST00000454468 ARHGAP35Q9NRY4 1499 aa17.21■□□□□ 0.35
SMPD4-213ENST00000454468 DDX10Q13206 875 aaKnown RBP17.19■□□□□ 0.34
SMPD4-213ENST00000454468 RRP7BPQ9NSQ0 103 aa17.19■□□□□ 0.34
SMPD4-213ENST00000454468 DHX57Q6P158 1386 aaKnown RBP17.18■□□□□ 0.34
SMPD4-213ENST00000454468 RAB3GAP2Q9H2M9 1393 aa17.15■□□□□ 0.34
SMPD4-213ENST00000454468 ZNF777Q9ULD5 760 aaPredicted RBP17.14■□□□□ 0.33
SMPD4-213ENST00000454468 ERICH3Q5RHP9 1530 aa17.12■□□□□ 0.33
SMPD4-213ENST00000454468 POLR3GLQ9BT43 218 aa17.12■□□□□ 0.33
SMPD4-213ENST00000454468 BIVM-ERCC5R4GMW8 1640 aa17.11■□□□□ 0.33
SMPD4-213ENST00000454468 PHLDB1Q86UU1 1377 aa17.09■□□□□ 0.33
SMPD4-213ENST00000454468 FHAD1B1AJZ9 1412 aa17.08■□□□□ 0.32
SMPD4-213ENST00000454468 POLA1P09884 1462 aaPredicted RBP17.06■□□□□ 0.32
SMPD4-213ENST00000454468 BCANQ96GW7 911 aa17.04■□□□□ 0.32
SMPD4-213ENST00000454468 ZNF326Q5BKZ1 582 aaKnown RBP17.04■□□□□ 0.32
SMPD4-213ENST00000454468 PDS5BQ9NTI5 1447 aa17.04■□□□□ 0.32
SMPD4-213ENST00000454468 TOPBP1Q92547 1522 aa17.03■□□□□ 0.32
SMPD4-213ENST00000454468 CHMP7Q8WUX9 453 aaPredicted RBP17.03■□□□□ 0.32
SMPD4-213ENST00000454468 SETD5Q9C0A6 1442 aa17.02■□□□□ 0.32
SMPD4-213ENST00000454468 TONSLQ96HA7 1378 aa17.01■□□□□ 0.31
SMPD4-213ENST00000454468 KCNH8Q96L42 1107 aa17.01■□□□□ 0.31
SMPD4-213ENST00000454468 FOXD1Q16676 465 aa17■□□□□ 0.31
SMPD4-213ENST00000454468 AQRO60306 1485 aaKnown RBP eCLIP16.99■□□□□ 0.317e-7■■■■□ 21.1
SMPD4-213ENST00000454468 CLSPNQ9HAW4 1339 aa16.97■□□□□ 0.31
SMPD4-213ENST00000454468 LRRC9Q6ZRR7 1453 aa16.96■□□□□ 0.31
SMPD4-213ENST00000454468 GAPVD1Q14C86 1478 aa16.96■□□□□ 0.3
SMPD4-213ENST00000454468 RRBP1Q9P2E9 1410 aaKnown RBP16.95■□□□□ 0.3
SMPD4-213ENST00000454468 ANP32CO43423 234 aa16.92■□□□□ 0.3
SMPD4-213ENST00000454468 FMN1Q68DA7 1419 aa16.9■□□□□ 0.3
SMPD4-213ENST00000454468 URB2Q14146 1524 aaKnown RBP16.89■□□□□ 0.3
SMPD4-213ENST00000454468 ERCC6Q03468 1493 aa16.89■□□□□ 0.29
SMPD4-213ENST00000454468 DNMBPQ6XZF7 1577 aa16.88■□□□□ 0.29
SMPD4-213ENST00000454468 TIAM1Q13009 1591 aa16.87■□□□□ 0.29
SMPD4-213ENST00000454468 CDK11AQ9UQ88 783 aaPredicted RBP16.87■□□□□ 0.29
SMPD4-213ENST00000454468 ABCA10Q8WWZ4 1543 aa16.85■□□□□ 0.29
SMPD4-213ENST00000454468 SENP3-EIF4A1A0A087X0R7 540 aa16.84■□□□□ 0.29
SMPD4-213ENST00000454468 PCF11O94913 1555 aaKnown RBP16.83■□□□□ 0.29
SMPD4-213ENST00000454468 ZNF644Q9H582 1327 aaPredicted RBP16.82■□□□□ 0.28
SMPD4-213ENST00000454468 NEFLP07196 543 aa16.82■□□□□ 0.28
SMPD4-213ENST00000454468 SLC4A1APQ9BWU0 796 aaKnown RBP16.82■□□□□ 0.28
SMPD4-213ENST00000454468 PPP1R15AO75807 674 aaPredicted RBP16.82■□□□□ 0.28
SMPD4-213ENST00000454468 CFDP1Q9UEE9 299 aaPredicted RBP16.81■□□□□ 0.28
SMPD4-213ENST00000454468 MYT1LQ9UL68 1186 aa16.8■□□□□ 0.28
SMPD4-213ENST00000454468 CASKIN1Q8WXD9 1431 aa16.79■□□□□ 0.28
SMPD4-213ENST00000454468 FGD6Q6ZV73 1430 aa16.78■□□□□ 0.28
SMPD4-213ENST00000454468 FKBP8Q14318 412 aa16.76■□□□□ 0.27
SMPD4-213ENST00000454468 KDM2AQ9Y2K7 1162 aa16.76■□□□□ 0.27
SMPD4-213ENST00000454468 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.73■□□□□ 0.276e-7■■■□□ 16.9
SMPD4-213ENST00000454468 NCOA2Q15596 1464 aa16.73■□□□□ 0.27
SMPD4-213ENST00000454468 MPHOSPH9Q99550 1183 aa16.72■□□□□ 0.27
SMPD4-213ENST00000454468 FYCO1Q9BQS8 1478 aa16.72■□□□□ 0.27
SMPD4-213ENST00000454468 HNRNPUQ00839 825 aaKnown RBP eCLIP16.72■□□□□ 0.27
SMPD4-213ENST00000454468 PLEKHD1A6NEE1 506 aa16.71■□□□□ 0.27
SMPD4-213ENST00000454468 FAM9BQ8IZU0 186 aa16.71■□□□□ 0.27
SMPD4-213ENST00000454468 CCDC18Q5T9S5 1454 aa16.71■□□□□ 0.27
SMPD4-213ENST00000454468 IRX6P78412 446 aaPredicted RBP16.71■□□□□ 0.26
SMPD4-213ENST00000454468 ZNF608Q9ULD9 1512 aaPredicted RBP16.7■□□□□ 0.26
SMPD4-213ENST00000454468 LAMC3Q9Y6N6 1575 aa16.69■□□□□ 0.26
SMPD4-213ENST00000454468 JPH4Q96JJ6 628 aa16.69■□□□□ 0.26
SMPD4-213ENST00000454468 EIF4G2P78344 907 aaKnown RBP eCLIP16.68■□□□□ 0.26
SMPD4-213ENST00000454468 L3MBTL2Q969R5 705 aa16.68■□□□□ 0.26
SMPD4-213ENST00000454468 HSPA5P11021 654 aaKnown RBP16.68■□□□□ 0.26
SMPD4-213ENST00000454468 MYOM3Q5VTT5 1437 aa16.68■□□□□ 0.26
SMPD4-213ENST00000454468 WDR97A6NE52 1622 aa16.67■□□□□ 0.26
SMPD4-213ENST00000454468 PTPRKQ15262 1439 aa16.66■□□□□ 0.26
SMPD4-213ENST00000454468 CDK13Q14004 1512 aaKnown RBP16.66■□□□□ 0.26
SMPD4-213ENST00000454468 SUPT16HQ9Y5B9 1047 aaKnown RBP16.66■□□□□ 0.26
SMPD4-213ENST00000454468 TSPY4P0CV99 314 aa16.65■□□□□ 0.26
SMPD4-213ENST00000454468 TSPY10P0CW01 314 aa16.65■□□□□ 0.26
SMPD4-213ENST00000454468 EFCAB5A4FU69 1503 aa16.64■□□□□ 0.25
SMPD4-213ENST00000454468 RGL3Q3MIN7 710 aa16.63■□□□□ 0.25
SMPD4-213ENST00000454468 MAPKBP1O60336 1514 aa16.62■□□□□ 0.25
SMPD4-213ENST00000454468 PRDM2Q13029 1718 aa16.61■□□□□ 0.25
SMPD4-213ENST00000454468 GRIN2BQ13224 1484 aa16.61■□□□□ 0.25
SMPD4-213ENST00000454468 TIMELESSQ9UNS1 1208 aa16.61■□□□□ 0.25
SMPD4-213ENST00000454468 BCL11AQ9H165 835 aa16.6■□□□□ 0.25
SMPD4-213ENST00000454468 MRC2Q9UBG0 1479 aa16.6■□□□□ 0.25
SMPD4-213ENST00000454468 HNRNPMP52272 730 aaKnown RBP eCLIP16.6■□□□□ 0.251e-6■■■■□ 22.6
SMPD4-213ENST00000454468 KIF21AQ7Z4S6 1674 aa16.59■□□□□ 0.25
SMPD4-213ENST00000454468 CUL7Q14999 1698 aa16.59■□□□□ 0.25
SMPD4-213ENST00000454468 PKD2Q13563 968 aa16.59■□□□□ 0.25
SMPD4-213ENST00000454468 SNAPC4Q5SXM2 1469 aa16.57■□□□□ 0.24
SMPD4-213ENST00000454468 MRS2Q9HD23 443 aa16.57■□□□□ 0.24
SMPD4-213ENST00000454468 NAIPQ13075 1403 aa16.56■□□□□ 0.24
SMPD4-213ENST00000454468 MAP3K1Q13233 1512 aa16.56■□□□□ 0.24
SMPD4-213ENST00000454468 UACAQ9BZF9 1416 aa16.56■□□□□ 0.24
SMPD4-213ENST00000454468 SALL2Q9Y467 1007 aaPredicted RBP16.55■□□□□ 0.24
SMPD4-213ENST00000454468 PRG4Q92954 1404 aaPredicted RBP16.55■□□□□ 0.24
SMPD4-213ENST00000454468 EPRSP07814 1512 aaKnown RBP16.53■□□□□ 0.24
SMPD4-213ENST00000454468 HFM1A2PYH4 1435 aa16.53■□□□□ 0.24
SMPD4-213ENST00000454468 IQGAP2Q13576 1575 aa16.5■□□□□ 0.23
SMPD4-213ENST00000454468 CARMIL2Q6F5E8 1435 aa16.49■□□□□ 0.23
SMPD4-213ENST00000454468 SENP3Q9H4L4 574 aaPredicted RBP16.49■□□□□ 0.23
SMPD4-213ENST00000454468 CTTNBP2Q8WZ74 1663 aa16.49■□□□□ 0.23
SMPD4-213ENST00000454468 DCAF11Q8TEB1 546 aa16.48■□□□□ 0.23
SMPD4-213ENST00000454468 PLB1Q6P1J6 1458 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms