RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-209ENST00000451859 SNAPC4Q5SXM2 1469 aa15.4■□□□□ 0.06
RFX3-209ENST00000451859 BIVM-ERCC5R4GMW8 1640 aa15.39■□□□□ 0.05
RFX3-209ENST00000451859 SYNJ1O43426 1573 aa15.38■□□□□ 0.05
RFX3-209ENST00000451859 CAPN15O75808 1086 aa15.36■□□□□ 0.05
RFX3-209ENST00000451859 ARHGEF11O15085 1522 aa15.36■□□□□ 0.05
RFX3-209ENST00000451859 TOP2BQ02880 1626 aa15.35■□□□□ 0.05
RFX3-209ENST00000451859 ABCA5Q8WWZ7 1642 aa15.35■□□□□ 0.05
RFX3-209ENST00000451859 GRIN2BQ13224 1484 aa15.34■□□□□ 0.05
RFX3-209ENST00000451859 GAPVD1Q14C86 1478 aa15.33■□□□□ 0.05
RFX3-209ENST00000451859 MAGI1Q96QZ7 1491 aaPredicted RBP15.33■□□□□ 0.05
RFX3-209ENST00000451859 WRNQ14191 1432 aaPredicted RBP eCLIP15.33■□□□□ 0.04
RFX3-209ENST00000451859 ABCA10Q8WWZ4 1543 aa15.33■□□□□ 0.04
RFX3-209ENST00000451859 CHMP7Q8WUX9 453 aaPredicted RBP15.29■□□□□ 0.04
RFX3-209ENST00000451859 SYNJ2O15056 1496 aa15.27■□□□□ 0.04
RFX3-209ENST00000451859 CLASP1Q7Z460 1538 aa15.27■□□□□ 0.03
RFX3-209ENST00000451859 ADAMTS12P58397 1594 aa15.24■□□□□ 0.03
RFX3-209ENST00000451859 ARAP1Q96P48 1450 aa15.21■□□□□ 0.03
RFX3-209ENST00000451859 CYB5RLQ6IPT4 315 aa15.21■□□□□ 0.03
RFX3-209ENST00000451859 GRIN2AQ12879 1464 aa15.17■□□□□ 0.02
RFX3-209ENST00000451859 CEP170Q5SW79 1584 aa15.15■□□□□ 0.02
RFX3-209ENST00000451859 SLC4A2P04920 1241 aa15.15■□□□□ 0.02
RFX3-209ENST00000451859 ERICH3Q5RHP9 1530 aa15.15■□□□□ 0.02
RFX3-209ENST00000451859 FHAD1B1AJZ9 1412 aa15.11■□□□□ 0.01
RFX3-209ENST00000451859 ERCC6L2Q5T890 1561 aa15.09■□□□□ 0.01
RFX3-209ENST00000451859 NUP160Q12769 1436 aa15.07■□□□□ 0
RFX3-209ENST00000451859 SHROOM2Q13796 1616 aa15.05■□□□□ -0
RFX3-209ENST00000451859 CUL7Q14999 1698 aa15.03■□□□□ -0
RFX3-209ENST00000451859 TRHP20396 242 aaPredicted RBP15.02■□□□□ -0
RFX3-209ENST00000451859 RUSC2Q8N2Y8 1516 aa15.02□□□□□ -0.01
RFX3-209ENST00000451859 KIF27Q86VH2 1401 aa15.01□□□□□ -0.01
RFX3-209ENST00000451859 ABCB7O75027 752 aa15□□□□□ -0.01
RFX3-209ENST00000451859 KCNA4P22459 653 aa14.99□□□□□ -0.01
RFX3-209ENST00000451859 ZNF219Q9P2Y4 722 aaPredicted RBP14.97□□□□□ -0.01
RFX3-209ENST00000451859 IGF1RP08069 1367 aa14.95□□□□□ -0.02
RFX3-209ENST00000451859 PRG4Q92954 1404 aaPredicted RBP14.94□□□□□ -0.02
RFX3-209ENST00000451859 APLP2Q06481 763 aa14.92□□□□□ -0.02
RFX3-209ENST00000451859 JPH4Q96JJ6 628 aa14.9□□□□□ -0.02
RFX3-209ENST00000451859 CARMIL1Q5VZK9 1371 aa14.88□□□□□ -0.03
RFX3-209ENST00000451859 KIAA0586Q9BVV6 1533 aa14.87□□□□□ -0.03
RFX3-209ENST00000451859 KIF13AQ9H1H9 1805 aa14.83□□□□□ -0.04
RFX3-209ENST00000451859 IQGAP2Q13576 1575 aa14.83□□□□□ -0.04
RFX3-209ENST00000451859 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.83□□□□□ -0.04
RFX3-209ENST00000451859 HNRNPUL2Q1KMD3 747 aaKnown RBP14.83□□□□□ -0.04
RFX3-209ENST00000451859 ADCY10Q96PN6 1610 aa14.81□□□□□ -0.04
RFX3-209ENST00000451859 TTBK1Q5TCY1 1321 aaPredicted RBP14.81□□□□□ -0.04
RFX3-209ENST00000451859 CTTNBP2Q8WZ74 1663 aa14.81□□□□□ -0.04
RFX3-209ENST00000451859 RAPGEF2Q9Y4G8 1499 aa14.78□□□□□ -0.04
RFX3-209ENST00000451859 SAMD1Q6SPF0 538 aaPredicted RBP14.75□□□□□ -0.05
RFX3-209ENST00000451859 CARMIL2Q6F5E8 1435 aa14.74□□□□□ -0.05
RFX3-209ENST00000451859 TSPOAP1O95153 1857 aa14.73□□□□□ -0.05
RFX3-209ENST00000451859 NPM1P06748 294 aaKnown RBP eCLIP14.72□□□□□ -0.05
RFX3-209ENST00000451859 PTPRGP23470 1445 aa14.71□□□□□ -0.05
RFX3-209ENST00000451859 KIAA0556O60303 1618 aa14.7□□□□□ -0.06
RFX3-209ENST00000451859 DISP1Q96F81 1524 aa14.7□□□□□ -0.06
RFX3-209ENST00000451859 MAPKBP1O60336 1514 aa14.69□□□□□ -0.06
RFX3-209ENST00000451859 TNIKQ9UKE5 1360 aa14.69□□□□□ -0.06
RFX3-209ENST00000451859 DIP2BQ9P265 1576 aa14.68□□□□□ -0.06
RFX3-209ENST00000451859 UGGT2Q9NYU1 1516 aa14.68□□□□□ -0.06
RFX3-209ENST00000451859 RBM42Q9BTD8 480 aaKnown RBP14.67□□□□□ -0.06
RFX3-209ENST00000451859 ABCC10Q5T3U5 1492 aa14.64□□□□□ -0.07
RFX3-209ENST00000451859 PRXQ9BXM0 1461 aa14.64□□□□□ -0.07
RFX3-209ENST00000451859 FAM69CQ0P6D2 419 aa14.64□□□□□ -0.07
RFX3-209ENST00000451859 ABCC2Q92887 1545 aa14.62□□□□□ -0.07
RFX3-209ENST00000451859 ZCCHC11Q5TAX3 1644 aaKnown RBP14.61□□□□□ -0.07
RFX3-209ENST00000451859 UACAQ9BZF9 1416 aa14.6□□□□□ -0.07
RFX3-209ENST00000451859 UHRF1BP1LA0JNW5 1464 aa14.58□□□□□ -0.08
RFX3-209ENST00000451859 CHRDL2Q6WN34 429 aa14.58□□□□□ -0.08
RFX3-209ENST00000451859 FAM9AQ8IZU1 332 aaPredicted RBP14.58□□□□□ -0.08
RFX3-209ENST00000451859 GOLGA3Q08378 1498 aa14.57□□□□□ -0.08
RFX3-209ENST00000451859 CSRNP3Q8WYN3 585 aa14.57□□□□□ -0.08
RFX3-209ENST00000451859 ASXL2Q76L83 1435 aa14.57□□□□□ -0.08
RFX3-209ENST00000451859 PLB1Q6P1J6 1458 aa14.55□□□□□ -0.08
RFX3-209ENST00000451859 KDM6BO15054 1643 aa14.55□□□□□ -0.08
RFX3-209ENST00000451859 EEA1Q15075 1411 aa14.54□□□□□ -0.08
RFX3-209ENST00000451859 PPRC1Q5VV67 1664 aaKnown RBP14.53□□□□□ -0.08
RFX3-209ENST00000451859 KDM5BQ9UGL1 1544 aa14.53□□□□□ -0.08
RFX3-209ENST00000451859 POLA2Q14181 598 aa14.53□□□□□ -0.08
RFX3-209ENST00000451859 P3H3Q8IVL6 736 aa14.52□□□□□ -0.09
RFX3-209ENST00000451859 ABCA8O94911 1581 aa14.51□□□□□ -0.09
RFX3-209ENST00000451859 RANGAP1P46060 587 aaPredicted RBP14.51□□□□□ -0.09
RFX3-209ENST00000451859 SAMD9Q5K651 1589 aa14.51□□□□□ -0.09
RFX3-209ENST00000451859 GLI2P10070 1586 aa14.5□□□□□ -0.09
RFX3-209ENST00000451859 KIF21BO75037 1637 aa14.49□□□□□ -0.09
RFX3-209ENST00000451859 MAP3K4Q9Y6R4 1608 aa14.49□□□□□ -0.09
RFX3-209ENST00000451859 EPRSP07814 1512 aaKnown RBP14.48□□□□□ -0.09
RFX3-209ENST00000451859 EHMT2Q96KQ7 1210 aa14.48□□□□□ -0.09
RFX3-209ENST00000451859 ARID3CA6NKF2 412 aa14.47□□□□□ -0.09
RFX3-209ENST00000451859 MYCNP04198 464 aaPredicted RBP14.47□□□□□ -0.09
RFX3-209ENST00000451859 WDR7Q9Y4E6 1490 aa14.45□□□□□ -0.1
RFX3-209ENST00000451859 RAPGEF6Q8TEU7 1601 aa14.45□□□□□ -0.1
RFX3-209ENST00000451859 CFAP43Q8NDM7 1665 aa14.42□□□□□ -0.1
RFX3-209ENST00000451859 FHOD3Q2V2M9 1422 aa14.41□□□□□ -0.1
RFX3-209ENST00000451859 KCNH8Q96L42 1107 aa14.4□□□□□ -0.1
RFX3-209ENST00000451859 TEX14Q8IWB6 1497 aa14.38□□□□□ -0.11
RFX3-209ENST00000451859 EFCAB5A4FU69 1503 aa14.37□□□□□ -0.11
RFX3-209ENST00000451859 ATP10BO94823 1461 aa14.37□□□□□ -0.11
RFX3-209ENST00000451859 UBTFP17480 764 aaKnown RBP14.36□□□□□ -0.11
RFX3-209ENST00000451859 CD109Q6YHK3 1445 aa14.33□□□□□ -0.11
RFX3-209ENST00000451859 NUP153P49790 1475 aaKnown RBP14.33□□□□□ -0.12
RFX3-209ENST00000451859 COL17A1Q9UMD9 1497 aaPredicted RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms