RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 FHOD3Q2V2M9 1422 aa19.61■□□□□ 0.73
HERPUD1-204ENST00000439977 LRRC9Q6ZRR7 1453 aa19.59■□□□□ 0.73
HERPUD1-204ENST00000439977 TIAM1Q13009 1591 aa19.59■□□□□ 0.73
HERPUD1-204ENST00000439977 KCNH8Q96L42 1107 aa19.58■□□□□ 0.73
HERPUD1-204ENST00000439977 CC2D2AQ9P2K1 1620 aa19.58■□□□□ 0.73
HERPUD1-204ENST00000439977 NESP48681 1621 aa19.58■□□□□ 0.73
HERPUD1-204ENST00000439977 HIRIP3Q9BW71 556 aaPredicted RBP19.57■□□□□ 0.72
HERPUD1-204ENST00000439977 SETD5Q9C0A6 1442 aa19.56■□□□□ 0.72
HERPUD1-204ENST00000439977 FHAD1B1AJZ9 1412 aa19.52■□□□□ 0.72
HERPUD1-204ENST00000439977 MAPKBP1O60336 1514 aa19.52■□□□□ 0.72
HERPUD1-204ENST00000439977 DDX10Q13206 875 aaKnown RBP19.5■□□□□ 0.71
HERPUD1-204ENST00000439977 POLA1P09884 1462 aaPredicted RBP19.49■□□□□ 0.71
HERPUD1-204ENST00000439977 PRDM2Q13029 1718 aa19.49■□□□□ 0.71
HERPUD1-204ENST00000439977 DNAJC5BQ9UF47 199 aa19.49■□□□□ 0.71
HERPUD1-204ENST00000439977 PCF11O94913 1555 aaKnown RBP19.48■□□□□ 0.71
HERPUD1-204ENST00000439977 TDRD9Q8NDG6 1382 aaKnown RBP19.48■□□□□ 0.71
HERPUD1-204ENST00000439977 TOPBP1Q92547 1522 aa19.46■□□□□ 0.71
HERPUD1-204ENST00000439977 MAP3K1Q13233 1512 aa19.45■□□□□ 0.7
HERPUD1-204ENST00000439977 ABCA10Q8WWZ4 1543 aa19.41■□□□□ 0.7
HERPUD1-204ENST00000439977 SUPT16HQ9Y5B9 1047 aaKnown RBP19.41■□□□□ 0.7
HERPUD1-204ENST00000439977 DNMBPQ6XZF7 1577 aa19.4■□□□□ 0.7
HERPUD1-204ENST00000439977 WDR97A6NE52 1622 aa19.4■□□□□ 0.7
HERPUD1-204ENST00000439977 MTUS2Q5JR59 1369 aa19.37■□□□□ 0.69
HERPUD1-204ENST00000439977 ARID3CA6NKF2 412 aa19.36■□□□□ 0.69
HERPUD1-204ENST00000439977 CASKIN1Q8WXD9 1431 aa19.36■□□□□ 0.69
HERPUD1-204ENST00000439977 FYCO1Q9BQS8 1478 aa19.33■□□□□ 0.69
HERPUD1-204ENST00000439977 PPP1R15AO75807 674 aaPredicted RBP19.33■□□□□ 0.68
HERPUD1-204ENST00000439977 URB2Q14146 1524 aaKnown RBP19.32■□□□□ 0.68
HERPUD1-204ENST00000439977 CHIC2Q9UKJ5 165 aa19.3■□□□□ 0.68
HERPUD1-204ENST00000439977 CFAP43Q8NDM7 1665 aa19.3■□□□□ 0.68
HERPUD1-204ENST00000439977 FMN1Q68DA7 1419 aa19.3■□□□□ 0.68
HERPUD1-204ENST00000439977 FGD6Q6ZV73 1430 aa19.3■□□□□ 0.68
HERPUD1-204ENST00000439977 PTPRKQ15262 1439 aa19.29■□□□□ 0.68
HERPUD1-204ENST00000439977 BCANQ96GW7 911 aa19.28■□□□□ 0.68
HERPUD1-204ENST00000439977 RRP7BPQ9NSQ0 103 aa19.27■□□□□ 0.67
HERPUD1-204ENST00000439977 EFCAB5A4FU69 1503 aa19.26■□□□□ 0.67
HERPUD1-204ENST00000439977 TONSLQ96HA7 1378 aa19.25■□□□□ 0.67
HERPUD1-204ENST00000439977 GAPVD1Q14C86 1478 aa19.25■□□□□ 0.67
HERPUD1-204ENST00000439977 TRIM52Q96A61 297 aa19.24■□□□□ 0.67
HERPUD1-204ENST00000439977 SNAPC4Q5SXM2 1469 aa19.24■□□□□ 0.67
HERPUD1-204ENST00000439977 AQRO60306 1485 aaKnown RBP eCLIP19.23■□□□□ 0.674e-7■■■■■ 42.8
HERPUD1-204ENST00000439977 TIMELESSQ9UNS1 1208 aa19.21■□□□□ 0.67
HERPUD1-204ENST00000439977 CCDC18Q5T9S5 1454 aa19.21■□□□□ 0.67
HERPUD1-204ENST00000439977 CUL7Q14999 1698 aa19.21■□□□□ 0.67
HERPUD1-204ENST00000439977 NCOA2Q15596 1464 aa19.19■□□□□ 0.66
HERPUD1-204ENST00000439977 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.18■□□□□ 0.66
HERPUD1-204ENST00000439977 ANP32CO43423 234 aa19.18■□□□□ 0.66
HERPUD1-204ENST00000439977 CTTNBP2Q8WZ74 1663 aa19.17■□□□□ 0.66
HERPUD1-204ENST00000439977 FKBP8Q14318 412 aa19.16■□□□□ 0.66
HERPUD1-204ENST00000439977 PDS5BQ9NTI5 1447 aa19.15■□□□□ 0.66
HERPUD1-204ENST00000439977 HFM1A2PYH4 1435 aa19.15■□□□□ 0.66
HERPUD1-204ENST00000439977 MYOM3Q5VTT5 1437 aa19.15■□□□□ 0.66
HERPUD1-204ENST00000439977 NAIPQ13075 1403 aa19.14■□□□□ 0.65
HERPUD1-204ENST00000439977 FOXD1Q16676 465 aa19.13■□□□□ 0.65
HERPUD1-204ENST00000439977 UACAQ9BZF9 1416 aa19.13■□□□□ 0.65
HERPUD1-204ENST00000439977 LAMC3Q9Y6N6 1575 aa19.12■□□□□ 0.65
HERPUD1-204ENST00000439977 GRIN2BQ13224 1484 aa19.11■□□□□ 0.65
HERPUD1-204ENST00000439977 ABCA5Q8WWZ7 1642 aa19.09■□□□□ 0.65
HERPUD1-204ENST00000439977 TSHZ2Q9NRE2 1034 aa19.08■□□□□ 0.64
HERPUD1-204ENST00000439977 MAGI3Q5TCQ9 1506 aa19.08■□□□□ 0.64
HERPUD1-204ENST00000439977 LRRIQ1Q96JM4 1722 aa19.08■□□□□ 0.64
HERPUD1-204ENST00000439977 PTPN23Q9H3S7 1636 aa19.07■□□□□ 0.64
HERPUD1-204ENST00000439977 SAMD9Q5K651 1589 aa19.07■□□□□ 0.64
HERPUD1-204ENST00000439977 CCER2I3L3R5 266 aa19.03■□□□□ 0.64
HERPUD1-204ENST00000439977 CDK13Q14004 1512 aaKnown RBP19.01■□□□□ 0.63
HERPUD1-204ENST00000439977 HSPA5P11021 654 aaKnown RBP19.01■□□□□ 0.63
HERPUD1-204ENST00000439977 KIF21AQ7Z4S6 1674 aa19.01■□□□□ 0.63
HERPUD1-204ENST00000439977 EHBP1L1Q8N3D4 1523 aa19■□□□□ 0.63
HERPUD1-204ENST00000439977 ZNF644Q9H582 1327 aaPredicted RBP19■□□□□ 0.63
HERPUD1-204ENST00000439977 MPHOSPH9Q99550 1183 aa19■□□□□ 0.63
HERPUD1-204ENST00000439977 SUPT6HQ7KZ85 1726 aaKnown RBP19■□□□□ 0.63
HERPUD1-204ENST00000439977 UGGT2Q9NYU1 1516 aa18.99■□□□□ 0.63
HERPUD1-204ENST00000439977 NEFLP07196 543 aa18.97■□□□□ 0.63
HERPUD1-204ENST00000439977 L3MBTL2Q969R5 705 aa18.97■□□□□ 0.63
HERPUD1-204ENST00000439977 WASHC2AQ641Q2 1341 aa18.96■□□□□ 0.63
HERPUD1-204ENST00000439977 EPRSP07814 1512 aaKnown RBP18.96■□□□□ 0.63
HERPUD1-204ENST00000439977 TARBP1Q13395 1621 aaKnown RBP18.96■□□□□ 0.63
HERPUD1-204ENST00000439977 HNRNPUQ00839 825 aaKnown RBP eCLIP18.95■□□□□ 0.62
HERPUD1-204ENST00000439977 DENND4BO75064 1496 aaPredicted RBP18.94■□□□□ 0.62
HERPUD1-204ENST00000439977 KDM6BO15054 1643 aa18.94■□□□□ 0.62
HERPUD1-204ENST00000439977 IRX6P78412 446 aaPredicted RBP18.92■□□□□ 0.62
HERPUD1-204ENST00000439977 CNGB1Q14028 1251 aaPredicted RBP18.92■□□□□ 0.62
HERPUD1-204ENST00000439977 KDM5BQ9UGL1 1544 aa18.92■□□□□ 0.62
HERPUD1-204ENST00000439977 EIF4G2P78344 907 aaKnown RBP eCLIP18.92■□□□□ 0.62
HERPUD1-204ENST00000439977 ZNF608Q9ULD9 1512 aaPredicted RBP18.91■□□□□ 0.62
HERPUD1-204ENST00000439977 C11orf95C9JLR9 678 aaPredicted RBP18.91■□□□□ 0.62
HERPUD1-204ENST00000439977 ARHGEF11O15085 1522 aa18.91■□□□□ 0.62
HERPUD1-204ENST00000439977 IQGAP2Q13576 1575 aa18.9■□□□□ 0.62
HERPUD1-204ENST00000439977 CCDC184Q52MB2 194 aa18.9■□□□□ 0.62
HERPUD1-204ENST00000439977 THOC2Q8NI27 1593 aaKnown RBP18.9■□□□□ 0.62
HERPUD1-204ENST00000439977 FBLN2P98095 1184 aa18.9■□□□□ 0.62
HERPUD1-204ENST00000439977 ZNF777Q9ULD5 760 aaPredicted RBP18.89■□□□□ 0.61
HERPUD1-204ENST00000439977 SLC4A1APQ9BWU0 796 aaKnown RBP18.88■□□□□ 0.61
HERPUD1-204ENST00000439977 NBPF8Q3BBV2 869 aa18.87■□□□□ 0.61
HERPUD1-204ENST00000439977 HECW1Q76N89 1606 aa18.87■□□□□ 0.61
HERPUD1-204ENST00000439977 TCOF1Q13428 1488 aaKnown RBP18.86■□□□□ 0.61
HERPUD1-204ENST00000439977 MYT1Q01538 1121 aa18.84■□□□□ 0.61
HERPUD1-204ENST00000439977 ZNF326Q5BKZ1 582 aaKnown RBP18.83■□□□□ 0.6
HERPUD1-204ENST00000439977 FAM9BQ8IZU0 186 aa18.83■□□□□ 0.6
HERPUD1-204ENST00000439977 MIA2Q96PC5 1412 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms