RNA–Protein interactions for RNA: ENST00000436601.1

LSM3P3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 3, humanhuman

BASIC

Gene LSM3P3, Length 306 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P3-201ENST00000436601 CUX2O14529 1486 aa11.64□□□□□ -0.55
LSM3P3-201ENST00000436601 FAM9AQ8IZU1 332 aaPredicted RBP11.64□□□□□ -0.55
LSM3P3-201ENST00000436601 RUSC2Q8N2Y8 1516 aa11.64□□□□□ -0.55
LSM3P3-201ENST00000436601 ABCA10Q8WWZ4 1543 aa11.6□□□□□ -0.55
LSM3P3-201ENST00000436601 KIF27Q86VH2 1401 aa11.59□□□□□ -0.55
LSM3P3-201ENST00000436601 IFT140Q96RY7 1462 aa11.58□□□□□ -0.56
LSM3P3-201ENST00000436601 TDRD9Q8NDG6 1382 aaKnown RBP11.58□□□□□ -0.56
LSM3P3-201ENST00000436601 EEA1Q15075 1411 aa11.58□□□□□ -0.56
LSM3P3-201ENST00000436601 TARBP1Q13395 1621 aaKnown RBP11.57□□□□□ -0.56
LSM3P3-201ENST00000436601 FBXO3Q9UK99 471 aa11.55□□□□□ -0.56
LSM3P3-201ENST00000436601 IGF1RP08069 1367 aa11.54□□□□□ -0.56
LSM3P3-201ENST00000436601 ZNF608Q9ULD9 1512 aaPredicted RBP11.54□□□□□ -0.56
LSM3P3-201ENST00000436601 AQRO60306 1485 aaKnown RBP eCLIP11.52□□□□□ -0.56
LSM3P3-201ENST00000436601 LOC105371045A0A1W2PR82 267 aa11.52□□□□□ -0.57
LSM3P3-201ENST00000436601 WDR97A6NE52 1622 aa11.51□□□□□ -0.57
LSM3P3-201ENST00000436601 GAPVD1Q14C86 1478 aa11.51□□□□□ -0.57
LSM3P3-201ENST00000436601 SPDYE4A6NLX3 237 aa11.49□□□□□ -0.57
LSM3P3-201ENST00000436601 ABCA5Q8WWZ7 1642 aa11.49□□□□□ -0.57
LSM3P3-201ENST00000436601 PRXQ9BXM0 1461 aa11.48□□□□□ -0.57
LSM3P3-201ENST00000436601 GRIN2BQ13224 1484 aa11.45□□□□□ -0.58
LSM3P3-201ENST00000436601 CARMIL1Q5VZK9 1371 aa11.45□□□□□ -0.58
LSM3P3-201ENST00000436601 ERICH3Q5RHP9 1530 aa11.45□□□□□ -0.58
LSM3P3-201ENST00000436601 EIF4G3O43432 1585 aaKnown RBP11.44□□□□□ -0.58
LSM3P3-201ENST00000436601 FBLN2P98095 1184 aa11.43□□□□□ -0.58
LSM3P3-201ENST00000436601 PROM2Q8N271 834 aa11.43□□□□□ -0.58
LSM3P3-201ENST00000436601 RAPGEF2Q9Y4G8 1499 aa11.43□□□□□ -0.58
LSM3P3-201ENST00000436601 MKRN4PQ13434 485 aaPredicted RBP11.42□□□□□ -0.58
LSM3P3-201ENST00000436601 KIF21BO75037 1637 aa11.41□□□□□ -0.58
LSM3P3-201ENST00000436601 GOLGA3Q08378 1498 aa11.4□□□□□ -0.58
LSM3P3-201ENST00000436601 SNAPC4Q5SXM2 1469 aa11.39□□□□□ -0.59
LSM3P3-201ENST00000436601 FHAD1B1AJZ9 1412 aa11.39□□□□□ -0.59
LSM3P3-201ENST00000436601 UBTFP17480 764 aaKnown RBP11.38□□□□□ -0.59
LSM3P3-201ENST00000436601 MAGI1Q96QZ7 1491 aaPredicted RBP11.37□□□□□ -0.59
LSM3P3-201ENST00000436601 CUL7Q14999 1698 aa11.36□□□□□ -0.59
LSM3P3-201ENST00000436601 PBRM1Q86U86 1689 aa11.36□□□□□ -0.59
LSM3P3-201ENST00000436601 TNIKQ9UKE5 1360 aa11.36□□□□□ -0.59
LSM3P3-201ENST00000436601 ADAMTS12P58397 1594 aa11.36□□□□□ -0.59
LSM3P3-201ENST00000436601 SYNJ2O15056 1496 aa11.33□□□□□ -0.6
LSM3P3-201ENST00000436601 VASPP50552 380 aaPredicted RBP11.33□□□□□ -0.6
LSM3P3-201ENST00000436601 CHMP7Q8WUX9 453 aaPredicted RBP11.33□□□□□ -0.6
LSM3P3-201ENST00000436601 TRHP20396 242 aaPredicted RBP11.32□□□□□ -0.6
LSM3P3-201ENST00000436601 GRIN2AQ12879 1464 aa11.31□□□□□ -0.6
LSM3P3-201ENST00000436601 POLA2Q14181 598 aa11.29□□□□□ -0.6
LSM3P3-201ENST00000436601 SPINK5Q9NQ38 1064 aaPredicted RBP11.29□□□□□ -0.6
LSM3P3-201ENST00000436601 RNF39Q9H2S5 420 aa11.27□□□□□ -0.61
LSM3P3-201ENST00000436601 CEP162Q5TB80 1403 aa11.26□□□□□ -0.61
LSM3P3-201ENST00000436601 RANGAP1P46060 587 aaPredicted RBP11.26□□□□□ -0.61
LSM3P3-201ENST00000436601 NUP160Q12769 1436 aa11.26□□□□□ -0.61
LSM3P3-201ENST00000436601 ZBTB12Q9Y330 459 aaPredicted RBP11.25□□□□□ -0.61
LSM3P3-201ENST00000436601 CAPN15O75808 1086 aa11.24□□□□□ -0.61
LSM3P3-201ENST00000436601 CLIP1P30622 1438 aa11.23□□□□□ -0.61
LSM3P3-201ENST00000436601 KIAA0586Q9BVV6 1533 aa11.23□□□□□ -0.61
LSM3P3-201ENST00000436601 CEP170Q5SW79 1584 aa11.23□□□□□ -0.61
LSM3P3-201ENST00000436601 C1QBPQ07021 282 aaKnown RBP11.2□□□□□ -0.62
LSM3P3-201ENST00000436601 IFNLR1Q8IU57 520 aaPredicted RBP11.19□□□□□ -0.62
LSM3P3-201ENST00000436601 ARHGAP35Q9NRY4 1499 aa11.19□□□□□ -0.62
LSM3P3-201ENST00000436601 PLCB2Q00722 1185 aa11.18□□□□□ -0.62
LSM3P3-201ENST00000436601 JPH4Q96JJ6 628 aa11.18□□□□□ -0.62
LSM3P3-201ENST00000436601 CHD1O14646 1710 aa11.18□□□□□ -0.62
LSM3P3-201ENST00000436601 IQGAP2Q13576 1575 aa11.17□□□□□ -0.62
LSM3P3-201ENST00000436601 P3H3Q8IVL6 736 aa11.17□□□□□ -0.62
LSM3P3-201ENST00000436601 OSCARQ8IYS5 282 aa11.16□□□□□ -0.62
LSM3P3-201ENST00000436601 CTTNBP2Q8WZ74 1663 aa11.16□□□□□ -0.62
LSM3P3-201ENST00000436601 UGGT2Q9NYU1 1516 aa11.15□□□□□ -0.62
LSM3P3-201ENST00000436601 ARAP1Q96P48 1450 aa11.15□□□□□ -0.62
LSM3P3-201ENST00000436601 CLASP1Q7Z460 1538 aa11.14□□□□□ -0.63
LSM3P3-201ENST00000436601 EFCAB5A4FU69 1503 aa11.13□□□□□ -0.63
LSM3P3-201ENST00000436601 DISP1Q96F81 1524 aa11.13□□□□□ -0.63
LSM3P3-201ENST00000436601 FHOD3Q2V2M9 1422 aa11.12□□□□□ -0.63
LSM3P3-201ENST00000436601 SAMD9Q5K651 1589 aa11.11□□□□□ -0.63
LSM3P3-201ENST00000436601 PRG4Q92954 1404 aaPredicted RBP11.1□□□□□ -0.63
LSM3P3-201ENST00000436601 VPS8Q8N3P4 1428 aa11.09□□□□□ -0.63
LSM3P3-201ENST00000436601 CARMIL2Q6F5E8 1435 aa11.09□□□□□ -0.63
LSM3P3-201ENST00000436601 SHROOM2Q13796 1616 aa11.08□□□□□ -0.64
LSM3P3-201ENST00000436601 KIAA0556O60303 1618 aa11.07□□□□□ -0.64
LSM3P3-201ENST00000436601 PKD2Q13563 968 aa11.06□□□□□ -0.64
LSM3P3-201ENST00000436601 ABCB7O75027 752 aa11.05□□□□□ -0.64
LSM3P3-201ENST00000436601 ERCC6L2Q5T890 1561 aa11.05□□□□□ -0.64
LSM3P3-201ENST00000436601 FMN1Q68DA7 1419 aa11.05□□□□□ -0.64
LSM3P3-201ENST00000436601 TTBK1Q5TCY1 1321 aaPredicted RBP11.04□□□□□ -0.64
LSM3P3-201ENST00000436601 PTPRGP23470 1445 aa11.02□□□□□ -0.64
LSM3P3-201ENST00000436601 CASKIN1Q8WXD9 1431 aa11.02□□□□□ -0.64
LSM3P3-201ENST00000436601 STAG3Q9UJ98 1225 aa11.02□□□□□ -0.65
LSM3P3-201ENST00000436601 SPOCK2Q92563 424 aa11□□□□□ -0.65
LSM3P3-201ENST00000436601 ATP1B4Q9UN42 357 aaPredicted RBP11□□□□□ -0.65
LSM3P3-201ENST00000436601 PLB1Q6P1J6 1458 aa10.99□□□□□ -0.65
LSM3P3-201ENST00000436601 PCF11O94913 1555 aaKnown RBP10.99□□□□□ -0.65
LSM3P3-201ENST00000436601 HAP1P54257 671 aaPredicted RBP10.98□□□□□ -0.65
LSM3P3-201ENST00000436601 PPARGC1BQ86YN6 1023 aaKnown RBP10.98□□□□□ -0.65
LSM3P3-201ENST00000436601 ZNF692Q9BU19 519 aaPredicted RBP10.98□□□□□ -0.65
LSM3P3-201ENST00000436601 FYCO1Q9BQS8 1478 aa10.98□□□□□ -0.65
LSM3P3-201ENST00000436601 SPDYE2BA6NHP3 402 aa10.97□□□□□ -0.65
LSM3P3-201ENST00000436601 SPDYE6P0CI01 402 aa10.97□□□□□ -0.65
LSM3P3-201ENST00000436601 SPDYE2Q495Y8 402 aa10.97□□□□□ -0.65
LSM3P3-201ENST00000436601 KLHL34Q8N239 644 aa10.97□□□□□ -0.65
LSM3P3-201ENST00000436601 KANK4Q5T7N3 995 aaPredicted RBP10.96□□□□□ -0.65
LSM3P3-201ENST00000436601 ABCA8O94911 1581 aa10.95□□□□□ -0.66
LSM3P3-201ENST00000436601 NUP153P49790 1475 aaKnown RBP10.95□□□□□ -0.66
LSM3P3-201ENST00000436601 UACAQ9BZF9 1416 aa10.95□□□□□ -0.66
LSM3P3-201ENST00000436601 ARID3CA6NKF2 412 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms