RNA–Protein interactions for RNA: ENST00000431540.7

CDH13-203, Transcript of cadherin 13, humanhuman

TSL 1 (best) BASIC

Gene CDH13, Length 831 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-203ENST00000431540 GRIN2BQ13224 1484 aa15.09■□□□□ 0.01
CDH13-203ENST00000431540 FGD5Q6ZNL6 1462 aa15.09■□□□□ 0.01
CDH13-203ENST00000431540 RAD54L2Q9Y4B4 1467 aa15.09■□□□□ 0.01
CDH13-203ENST00000431540 ZNF219Q9P2Y4 722 aaPredicted RBP15.09■□□□□ 0.01
CDH13-203ENST00000431540 SYNJ1O43426 1573 aa15.09■□□□□ 0.01
CDH13-203ENST00000431540 TDRD9Q8NDG6 1382 aaKnown RBP15.09■□□□□ 0.01
CDH13-203ENST00000431540 CHMP7Q8WUX9 453 aaPredicted RBP15.08■□□□□ 0
CDH13-203ENST00000431540 ARAP1Q96P48 1450 aa15.08■□□□□ 0
CDH13-203ENST00000431540 CLASP1Q7Z460 1538 aa15.07■□□□□ 0
CDH13-203ENST00000431540 SYNJ2O15056 1496 aa15.06■□□□□ 0
CDH13-203ENST00000431540 CUX1P39880 1505 aa15.06■□□□□ 0
CDH13-203ENST00000431540 SNAPC4Q5SXM2 1469 aa15.04■□□□□ -0
CDH13-203ENST00000431540 APLP2Q06481 763 aa15.04■□□□□ -0
CDH13-203ENST00000431540 RBM42Q9BTD8 480 aaKnown RBP15.01□□□□□ -0.01
CDH13-203ENST00000431540 ABCA10Q8WWZ4 1543 aa15.01□□□□□ -0.01
CDH13-203ENST00000431540 GAPVD1Q14C86 1478 aa15.01□□□□□ -0.01
CDH13-203ENST00000431540 CHRDL2Q6WN34 429 aa15□□□□□ -0.01
CDH13-203ENST00000431540 PBRM1Q86U86 1689 aa15□□□□□ -0.01
CDH13-203ENST00000431540 ABCA5Q8WWZ7 1642 aa14.95□□□□□ -0.02
CDH13-203ENST00000431540 WRNQ14191 1432 aaPredicted RBP eCLIP14.92□□□□□ -0.02
CDH13-203ENST00000431540 SLC4A2P04920 1241 aa14.9□□□□□ -0.02
CDH13-203ENST00000431540 SP7Q8TDD2 431 aaPredicted RBP14.9□□□□□ -0.02
CDH13-203ENST00000431540 BIVM-ERCC5R4GMW8 1640 aa14.88□□□□□ -0.03
CDH13-203ENST00000431540 TOP2BQ02880 1626 aa14.87□□□□□ -0.03
CDH13-203ENST00000431540 GRIN2AQ12879 1464 aa14.86□□□□□ -0.03
CDH13-203ENST00000431540 NUP160Q12769 1436 aa14.85□□□□□ -0.03
CDH13-203ENST00000431540 ERICH3Q5RHP9 1530 aa14.85□□□□□ -0.03
CDH13-203ENST00000431540 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.84□□□□□ -0.03
CDH13-203ENST00000431540 HNRNPUL2Q1KMD3 747 aaKnown RBP14.84□□□□□ -0.03
CDH13-203ENST00000431540 FHAD1B1AJZ9 1412 aa14.83□□□□□ -0.03
CDH13-203ENST00000431540 SHROOM2Q13796 1616 aa14.83□□□□□ -0.04
CDH13-203ENST00000431540 ADAMTS12P58397 1594 aa14.81□□□□□ -0.04
CDH13-203ENST00000431540 CEP170Q5SW79 1584 aa14.78□□□□□ -0.04
CDH13-203ENST00000431540 SUPT5HO00267 1087 aaKnown RBP14.77□□□□□ -0.05
CDH13-203ENST00000431540 SAMD1Q6SPF0 538 aaPredicted RBP14.71□□□□□ -0.05
CDH13-203ENST00000431540 JPH4Q96JJ6 628 aa14.71□□□□□ -0.05
CDH13-203ENST00000431540 ERCC6L2Q5T890 1561 aa14.69□□□□□ -0.06
CDH13-203ENST00000431540 KIF13AQ9H1H9 1805 aa14.67□□□□□ -0.06
CDH13-203ENST00000431540 PRG4Q92954 1404 aaPredicted RBP14.66□□□□□ -0.06
CDH13-203ENST00000431540 NPM1P06748 294 aaKnown RBP eCLIP14.64□□□□□ -0.07
CDH13-203ENST00000431540 KIAA0586Q9BVV6 1533 aa14.61□□□□□ -0.07
CDH13-203ENST00000431540 CUL7Q14999 1698 aa14.61□□□□□ -0.07
CDH13-203ENST00000431540 MAPKBP1O60336 1514 aa14.61□□□□□ -0.07
CDH13-203ENST00000431540 RUSC2Q8N2Y8 1516 aa14.6□□□□□ -0.07
CDH13-203ENST00000431540 KIF27Q86VH2 1401 aa14.58□□□□□ -0.07
CDH13-203ENST00000431540 ABCC10Q5T3U5 1492 aa14.58□□□□□ -0.08
CDH13-203ENST00000431540 IGF1RP08069 1367 aa14.58□□□□□ -0.08
CDH13-203ENST00000431540 POLA2Q14181 598 aa14.54□□□□□ -0.08
CDH13-203ENST00000431540 FAM69CQ0P6D2 419 aa14.52□□□□□ -0.09
CDH13-203ENST00000431540 ADCY10Q96PN6 1610 aa14.5□□□□□ -0.09
CDH13-203ENST00000431540 DIP2BQ9P265 1576 aa14.49□□□□□ -0.09
CDH13-203ENST00000431540 AKT1S1Q96B36 256 aa14.49□□□□□ -0.09
CDH13-203ENST00000431540 CARMIL2Q6F5E8 1435 aa14.49□□□□□ -0.09
CDH13-203ENST00000431540 CARMIL1Q5VZK9 1371 aa14.47□□□□□ -0.09
CDH13-203ENST00000431540 PIP4P2Q8N4L2 257 aa14.47□□□□□ -0.09
CDH13-203ENST00000431540 PTPRGP23470 1445 aa14.46□□□□□ -0.09
CDH13-203ENST00000431540 TNIKQ9UKE5 1360 aa14.44□□□□□ -0.1
CDH13-203ENST00000431540 UHRF1BP1LA0JNW5 1464 aa14.44□□□□□ -0.1
CDH13-203ENST00000431540 HAX1O00165 279 aa14.42□□□□□ -0.1
CDH13-203ENST00000431540 PLB1Q6P1J6 1458 aa14.42□□□□□ -0.1
CDH13-203ENST00000431540 GLI2P10070 1586 aa14.42□□□□□ -0.1
CDH13-203ENST00000431540 KDM6BO15054 1643 aa14.41□□□□□ -0.1
CDH13-203ENST00000431540 ABCC2Q92887 1545 aa14.41□□□□□ -0.1
CDH13-203ENST00000431540 IQGAP2Q13576 1575 aa14.4□□□□□ -0.1
CDH13-203ENST00000431540 TSPOAP1O95153 1857 aa14.39□□□□□ -0.11
CDH13-203ENST00000431540 UACAQ9BZF9 1416 aa14.35□□□□□ -0.11
CDH13-203ENST00000431540 REM2Q8IYK8 340 aaPredicted RBP14.35□□□□□ -0.11
CDH13-203ENST00000431540 UGGT2Q9NYU1 1516 aa14.35□□□□□ -0.11
CDH13-203ENST00000431540 RAPGEF2Q9Y4G8 1499 aa14.34□□□□□ -0.11
CDH13-203ENST00000431540 KDM5BQ9UGL1 1544 aa14.34□□□□□ -0.11
CDH13-203ENST00000431540 KCNA4P22459 653 aa14.33□□□□□ -0.12
CDH13-203ENST00000431540 ASXL2Q76L83 1435 aa14.32□□□□□ -0.12
CDH13-203ENST00000431540 DISP1Q96F81 1524 aa14.31□□□□□ -0.12
CDH13-203ENST00000431540 PPRC1Q5VV67 1664 aaKnown RBP14.3□□□□□ -0.12
CDH13-203ENST00000431540 TEX14Q8IWB6 1497 aa14.29□□□□□ -0.12
CDH13-203ENST00000431540 KDM4FA0A1W2PPD8 638 aa14.28□□□□□ -0.12
CDH13-203ENST00000431540 MAP3K4Q9Y6R4 1608 aa14.28□□□□□ -0.12
CDH13-203ENST00000431540 GOLGA3Q08378 1498 aa14.26□□□□□ -0.13
CDH13-203ENST00000431540 FXR2P51116 673 aaKnown RBP eCLIP14.26□□□□□ -0.13
CDH13-203ENST00000431540 FAM9AQ8IZU1 332 aaPredicted RBP14.26□□□□□ -0.13
CDH13-203ENST00000431540 EPRSP07814 1512 aaKnown RBP14.25□□□□□ -0.13
CDH13-203ENST00000431540 CTTNBP2Q8WZ74 1663 aa14.25□□□□□ -0.13
CDH13-203ENST00000431540 KIAA0556O60303 1618 aa14.24□□□□□ -0.13
CDH13-203ENST00000431540 MYCNP04198 464 aaPredicted RBP14.24□□□□□ -0.13
CDH13-203ENST00000431540 ZCCHC11Q5TAX3 1644 aaKnown RBP14.23□□□□□ -0.13
CDH13-203ENST00000431540 ZBTB12Q9Y330 459 aaPredicted RBP14.2□□□□□ -0.14
CDH13-203ENST00000431540 CFAP43Q8NDM7 1665 aa14.2□□□□□ -0.14
CDH13-203ENST00000431540 PITPNM1O00562 1244 aa14.19□□□□□ -0.14
CDH13-203ENST00000431540 EVX2Q03828 476 aa14.19□□□□□ -0.14
CDH13-203ENST00000431540 WDR7Q9Y4E6 1490 aa14.18□□□□□ -0.14
CDH13-203ENST00000431540 MAGI3Q5TCQ9 1506 aa14.18□□□□□ -0.14
CDH13-203ENST00000431540 PHLDB1Q86UU1 1377 aa14.17□□□□□ -0.14
CDH13-203ENST00000431540 TTBK1Q5TCY1 1321 aaPredicted RBP14.16□□□□□ -0.14
CDH13-203ENST00000431540 PRXQ9BXM0 1461 aa14.16□□□□□ -0.14
CDH13-203ENST00000431540 ABCA8O94911 1581 aa14.15□□□□□ -0.14
CDH13-203ENST00000431540 COL17A1Q9UMD9 1497 aaPredicted RBP14.14□□□□□ -0.15
CDH13-203ENST00000431540 CD109Q6YHK3 1445 aa14.13□□□□□ -0.15
CDH13-203ENST00000431540 ADGRL1O94910 1474 aa14.12□□□□□ -0.15
CDH13-203ENST00000431540 ARAP3Q8WWN8 1544 aa14.1□□□□□ -0.15
CDH13-203ENST00000431540 KCNH8Q96L42 1107 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms