RNA–Protein interactions for RNA: ENST00000425516.1

CHCHD3P1-201, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3 pseudogene 1, humanhuman

BASIC

Gene CHCHD3P1, Length 676 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3P1-201ENST00000425516 TOP2BQ02880 1626 aa12.12□□□□□ -0.47
CHCHD3P1-201ENST00000425516 POLA1P09884 1462 aaPredicted RBP12.12□□□□□ -0.47
CHCHD3P1-201ENST00000425516 BIVM-ERCC5R4GMW8 1640 aa12.11□□□□□ -0.47
CHCHD3P1-201ENST00000425516 FGD5Q6ZNL6 1462 aa12.1□□□□□ -0.47
CHCHD3P1-201ENST00000425516 SOGA1O94964 1423 aa12.08□□□□□ -0.48
CHCHD3P1-201ENST00000425516 MKRN4PQ13434 485 aaPredicted RBP12.07□□□□□ -0.48
CHCHD3P1-201ENST00000425516 TARBP1Q13395 1621 aaKnown RBP12.07□□□□□ -0.48
CHCHD3P1-201ENST00000425516 IFT140Q96RY7 1462 aa12.07□□□□□ -0.48
CHCHD3P1-201ENST00000425516 RAD54L2Q9Y4B4 1467 aa12.07□□□□□ -0.48
CHCHD3P1-201ENST00000425516 OSCARQ8IYS5 282 aa12.04□□□□□ -0.48
CHCHD3P1-201ENST00000425516 ZNF608Q9ULD9 1512 aaPredicted RBP12.02□□□□□ -0.48
CHCHD3P1-201ENST00000425516 ABCA10Q8WWZ4 1543 aa12.01□□□□□ -0.49
CHCHD3P1-201ENST00000425516 TRIM41Q8WV44 630 aa12□□□□□ -0.49
CHCHD3P1-201ENST00000425516 TDRD9Q8NDG6 1382 aaKnown RBP11.99□□□□□ -0.49
CHCHD3P1-201ENST00000425516 WDR97A6NE52 1622 aa11.98□□□□□ -0.49
CHCHD3P1-201ENST00000425516 AQRO60306 1485 aaKnown RBP eCLIP11.98□□□□□ -0.49
CHCHD3P1-201ENST00000425516 ZBTB12Q9Y330 459 aaPredicted RBP11.98□□□□□ -0.49
CHCHD3P1-201ENST00000425516 EIF4G3O43432 1585 aaKnown RBP11.94□□□□□ -0.5
CHCHD3P1-201ENST00000425516 GAPVD1Q14C86 1478 aa11.93□□□□□ -0.5
CHCHD3P1-201ENST00000425516 ABCA5Q8WWZ7 1642 aa11.93□□□□□ -0.5
CHCHD3P1-201ENST00000425516 GRIN2BQ13224 1484 aa11.9□□□□□ -0.5
CHCHD3P1-201ENST00000425516 KIF27Q86VH2 1401 aa11.89□□□□□ -0.51
CHCHD3P1-201ENST00000425516 RBM42Q9BTD8 480 aaKnown RBP11.89□□□□□ -0.51
CHCHD3P1-201ENST00000425516 RUSC2Q8N2Y8 1516 aa11.88□□□□□ -0.51
CHCHD3P1-201ENST00000425516 FBLN2P98095 1184 aa11.88□□□□□ -0.51
CHCHD3P1-201ENST00000425516 IGF1RP08069 1367 aa11.88□□□□□ -0.51
CHCHD3P1-201ENST00000425516 ERICH3Q5RHP9 1530 aa11.86□□□□□ -0.51
CHCHD3P1-201ENST00000425516 PBRM1Q86U86 1689 aa11.84□□□□□ -0.51
CHCHD3P1-201ENST00000425516 SNAPC4Q5SXM2 1469 aa11.84□□□□□ -0.51
CHCHD3P1-201ENST00000425516 MAGI1Q96QZ7 1491 aaPredicted RBP11.84□□□□□ -0.51
CHCHD3P1-201ENST00000425516 FHAD1B1AJZ9 1412 aa11.8□□□□□ -0.52
CHCHD3P1-201ENST00000425516 SYNJ2O15056 1496 aa11.8□□□□□ -0.52
CHCHD3P1-201ENST00000425516 EEA1Q15075 1411 aa11.79□□□□□ -0.52
CHCHD3P1-201ENST00000425516 ADAMTS12P58397 1594 aa11.79□□□□□ -0.52
CHCHD3P1-201ENST00000425516 CHMP7Q8WUX9 453 aaPredicted RBP11.78□□□□□ -0.52
CHCHD3P1-201ENST00000425516 CARMIL1Q5VZK9 1371 aa11.78□□□□□ -0.52
CHCHD3P1-201ENST00000425516 CUL7Q14999 1698 aa11.75□□□□□ -0.53
CHCHD3P1-201ENST00000425516 AKT1S1Q96B36 256 aa11.75□□□□□ -0.53
CHCHD3P1-201ENST00000425516 GRIN2AQ12879 1464 aa11.75□□□□□ -0.53
CHCHD3P1-201ENST00000425516 PRXQ9BXM0 1461 aa11.75□□□□□ -0.53
CHCHD3P1-201ENST00000425516 FAM9AQ8IZU1 332 aaPredicted RBP11.74□□□□□ -0.53
CHCHD3P1-201ENST00000425516 CHD1O14646 1710 aa11.74□□□□□ -0.53
CHCHD3P1-201ENST00000425516 SPDYE2BA6NHP3 402 aa11.72□□□□□ -0.53
CHCHD3P1-201ENST00000425516 SPDYE6P0CI01 402 aa11.72□□□□□ -0.53
CHCHD3P1-201ENST00000425516 SPDYE2Q495Y8 402 aa11.72□□□□□ -0.53
CHCHD3P1-201ENST00000425516 REM2Q8IYK8 340 aaPredicted RBP11.72□□□□□ -0.53
CHCHD3P1-201ENST00000425516 RAPGEF2Q9Y4G8 1499 aa11.71□□□□□ -0.53
CHCHD3P1-201ENST00000425516 NUP160Q12769 1436 aa11.71□□□□□ -0.53
CHCHD3P1-201ENST00000425516 SSUH2Q9Y2M2 353 aa11.69□□□□□ -0.54
CHCHD3P1-201ENST00000425516 CEP170Q5SW79 1584 aa11.68□□□□□ -0.54
CHCHD3P1-201ENST00000425516 CLASP1Q7Z460 1538 aa11.67□□□□□ -0.54
CHCHD3P1-201ENST00000425516 ZNF692Q9BU19 519 aaPredicted RBP11.67□□□□□ -0.54
CHCHD3P1-201ENST00000425516 DNAJC5Q9H3Z4 198 aa11.66□□□□□ -0.54
CHCHD3P1-201ENST00000425516 KIF21BO75037 1637 aa11.64□□□□□ -0.55
CHCHD3P1-201ENST00000425516 PITPNM1O00562 1244 aa11.64□□□□□ -0.55
CHCHD3P1-201ENST00000425516 KIAA0586Q9BVV6 1533 aa11.64□□□□□ -0.55
CHCHD3P1-201ENST00000425516 CHRDL2Q6WN34 429 aa11.63□□□□□ -0.55
CHCHD3P1-201ENST00000425516 POTEHQ6S545 545 aa11.6□□□□□ -0.55
CHCHD3P1-201ENST00000425516 JPH4Q96JJ6 628 aa11.6□□□□□ -0.55
CHCHD3P1-201ENST00000425516 GOLGA3Q08378 1498 aa11.58□□□□□ -0.56
CHCHD3P1-201ENST00000425516 SHROOM2Q13796 1616 aa11.58□□□□□ -0.56
CHCHD3P1-201ENST00000425516 IQGAP2Q13576 1575 aa11.56□□□□□ -0.56
CHCHD3P1-201ENST00000425516 UBTFP17480 764 aaKnown RBP11.54□□□□□ -0.56
CHCHD3P1-201ENST00000425516 CTTNBP2Q8WZ74 1663 aa11.54□□□□□ -0.56
CHCHD3P1-201ENST00000425516 ARHGEF11O15085 1522 aa11.54□□□□□ -0.56
CHCHD3P1-201ENST00000425516 UGGT2Q9NYU1 1516 aa11.54□□□□□ -0.56
CHCHD3P1-201ENST00000425516 PRG4Q92954 1404 aaPredicted RBP11.53□□□□□ -0.56
CHCHD3P1-201ENST00000425516 LOC105371045A0A1W2PR82 267 aa11.53□□□□□ -0.56
CHCHD3P1-201ENST00000425516 SPDYE4A6NLX3 237 aa11.53□□□□□ -0.56
CHCHD3P1-201ENST00000425516 ERCC6L2Q5T890 1561 aa11.53□□□□□ -0.56
CHCHD3P1-201ENST00000425516 DISP1Q96F81 1524 aa11.51□□□□□ -0.57
CHCHD3P1-201ENST00000425516 RIMBP3CA6NJZ7 1639 aa11.51□□□□□ -0.57
CHCHD3P1-201ENST00000425516 RIMBP3BA6NNM3 1639 aa11.51□□□□□ -0.57
CHCHD3P1-201ENST00000425516 RIMBP3Q9UFD9 1639 aa11.51□□□□□ -0.57
CHCHD3P1-201ENST00000425516 TNIKQ9UKE5 1360 aa11.51□□□□□ -0.57
CHCHD3P1-201ENST00000425516 CLEC11AQ9Y240 323 aa11.48□□□□□ -0.57
CHCHD3P1-201ENST00000425516 ARAP1Q96P48 1450 aa11.48□□□□□ -0.57
CHCHD3P1-201ENST00000425516 CARMIL2Q6F5E8 1435 aa11.47□□□□□ -0.57
CHCHD3P1-201ENST00000425516 PIP4P2Q8N4L2 257 aa11.47□□□□□ -0.57
CHCHD3P1-201ENST00000425516 KIAA0556O60303 1618 aa11.46□□□□□ -0.58
CHCHD3P1-201ENST00000425516 SAMD9Q5K651 1589 aa11.45□□□□□ -0.58
CHCHD3P1-201ENST00000425516 CYB5RLQ6IPT4 315 aa11.43□□□□□ -0.58
CHCHD3P1-201ENST00000425516 SPDYE1Q8NFV5 336 aaPredicted RBP11.43□□□□□ -0.58
CHCHD3P1-201ENST00000425516 ARHGAP35Q9NRY4 1499 aa11.43□□□□□ -0.58
CHCHD3P1-201ENST00000425516 PTPRGP23470 1445 aa11.43□□□□□ -0.58
CHCHD3P1-201ENST00000425516 RANGAP1P46060 587 aaPredicted RBP11.42□□□□□ -0.58
CHCHD3P1-201ENST00000425516 FXR2P51116 673 aaKnown RBP eCLIP11.42□□□□□ -0.58
CHCHD3P1-201ENST00000425516 P3H3Q8IVL6 736 aa11.42□□□□□ -0.58
CHCHD3P1-201ENST00000425516 EFCAB5A4FU69 1503 aa11.41□□□□□ -0.58
CHCHD3P1-201ENST00000425516 CLIP1P30622 1438 aa11.39□□□□□ -0.59
CHCHD3P1-201ENST00000425516 FHOD3Q2V2M9 1422 aa11.39□□□□□ -0.59
CHCHD3P1-201ENST00000425516 CEP162Q5TB80 1403 aa11.39□□□□□ -0.59
CHCHD3P1-201ENST00000425516 TTBK1Q5TCY1 1321 aaPredicted RBP11.35□□□□□ -0.59
CHCHD3P1-201ENST00000425516 UHRF1BP1LA0JNW5 1464 aa11.35□□□□□ -0.59
CHCHD3P1-201ENST00000425516 PLB1Q6P1J6 1458 aa11.35□□□□□ -0.59
CHCHD3P1-201ENST00000425516 UACAQ9BZF9 1416 aa11.35□□□□□ -0.59
CHCHD3P1-201ENST00000425516 ABCA8O94911 1581 aa11.34□□□□□ -0.59
CHCHD3P1-201ENST00000425516 PROM2Q8N271 834 aa11.34□□□□□ -0.59
CHCHD3P1-201ENST00000425516 FKBP8Q14318 412 aa11.33□□□□□ -0.6
CHCHD3P1-201ENST00000425516 CHADLQ6NUI6 762 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms