RNA–Protein interactions for RNA: ENST00000421756.5

MCF2L-213, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best) BASIC

Gene MCF2L, Length 3,560 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-213ENST00000421756 KCNH8Q96L42 1107 aa19.34■□□□□ 0.69
MCF2L-213ENST00000421756 CC2D2AQ9P2K1 1620 aa19.33■□□□□ 0.69
MCF2L-213ENST00000421756 BIVM-ERCC5R4GMW8 1640 aa19.32■□□□□ 0.68
MCF2L-213ENST00000421756 RAB3GAP2Q9H2M9 1393 aa19.31■□□□□ 0.68
MCF2L-213ENST00000421756 DDX10Q13206 875 aaKnown RBP19.31■□□□□ 0.68
MCF2L-213ENST00000421756 PHLDB1Q86UU1 1377 aa19.28■□□□□ 0.68
MCF2L-213ENST00000421756 CNGB1Q14028 1251 aaPredicted RBP19.27■□□□□ 0.68
MCF2L-213ENST00000421756 ERICH3Q5RHP9 1530 aa19.27■□□□□ 0.67
MCF2L-213ENST00000421756 FBLN2P98095 1184 aa19.25■□□□□ 0.67
MCF2L-213ENST00000421756 RRP7BPQ9NSQ0 103 aa19.23■□□□□ 0.67
MCF2L-213ENST00000421756 TRIM52Q96A61 297 aa19.2■□□□□ 0.66
MCF2L-213ENST00000421756 BCANQ96GW7 911 aa19.19■□□□□ 0.66
MCF2L-213ENST00000421756 MTUS2Q5JR59 1369 aa19.18■□□□□ 0.66
MCF2L-213ENST00000421756 POLA1P09884 1462 aaPredicted RBP19.15■□□□□ 0.66
MCF2L-213ENST00000421756 RRBP1Q9P2E9 1410 aaKnown RBP19.13■□□□□ 0.65
MCF2L-213ENST00000421756 FOXD1Q16676 465 aa19.11■□□□□ 0.65
MCF2L-213ENST00000421756 SETD5Q9C0A6 1442 aa19.1■□□□□ 0.65
MCF2L-213ENST00000421756 TOPBP1Q92547 1522 aa19.1■□□□□ 0.65
MCF2L-213ENST00000421756 LRRC9Q6ZRR7 1453 aa19.09■□□□□ 0.65
MCF2L-213ENST00000421756 FHAD1B1AJZ9 1412 aa19.06■□□□□ 0.64
MCF2L-213ENST00000421756 ZNF777Q9ULD5 760 aaPredicted RBP19.04■□□□□ 0.64
MCF2L-213ENST00000421756 CLSPNQ9HAW4 1339 aa19.03■□□□□ 0.64
MCF2L-213ENST00000421756 POLR3GLQ9BT43 218 aa19.02■□□□□ 0.64
MCF2L-213ENST00000421756 AQRO60306 1485 aaKnown RBP eCLIP19.02■□□□□ 0.642e-6■■□□□ 12.9
MCF2L-213ENST00000421756 TIAM1Q13009 1591 aa19.02■□□□□ 0.63
MCF2L-213ENST00000421756 PCF11O94913 1555 aaKnown RBP19■□□□□ 0.63
MCF2L-213ENST00000421756 URB2Q14146 1524 aaKnown RBP18.99■□□□□ 0.63
MCF2L-213ENST00000421756 SENP3-EIF4A1A0A087X0R7 540 aa18.99■□□□□ 0.63
MCF2L-213ENST00000421756 TONSLQ96HA7 1378 aa18.98■□□□□ 0.63
MCF2L-213ENST00000421756 ZNF326Q5BKZ1 582 aaKnown RBP18.97■□□□□ 0.63
MCF2L-213ENST00000421756 PELP1Q8IZL8 1130 aaKnown RBP18.96■□□□□ 0.63
MCF2L-213ENST00000421756 GAPVD1Q14C86 1478 aa18.95■□□□□ 0.62
MCF2L-213ENST00000421756 DNMBPQ6XZF7 1577 aa18.92■□□□□ 0.62
MCF2L-213ENST00000421756 ABCA10Q8WWZ4 1543 aa18.91■□□□□ 0.62
MCF2L-213ENST00000421756 PDS5BQ9NTI5 1447 aa18.91■□□□□ 0.62
MCF2L-213ENST00000421756 PPP1R15AO75807 674 aaPredicted RBP18.91■□□□□ 0.62
MCF2L-213ENST00000421756 ZNF644Q9H582 1327 aaPredicted RBP18.91■□□□□ 0.62
MCF2L-213ENST00000421756 WDR97A6NE52 1622 aa18.9■□□□□ 0.62
MCF2L-213ENST00000421756 MAPKBP1O60336 1514 aa18.89■□□□□ 0.61
MCF2L-213ENST00000421756 ANP32CO43423 234 aa18.88■□□□□ 0.61
MCF2L-213ENST00000421756 PTPRKQ15262 1439 aa18.87■□□□□ 0.61
MCF2L-213ENST00000421756 SUPT16HQ9Y5B9 1047 aaKnown RBP18.87■□□□□ 0.61
MCF2L-213ENST00000421756 FMN1Q68DA7 1419 aa18.87■□□□□ 0.61
MCF2L-213ENST00000421756 FKBP8Q14318 412 aa18.86■□□□□ 0.61
MCF2L-213ENST00000421756 FGD6Q6ZV73 1430 aa18.86■□□□□ 0.61
MCF2L-213ENST00000421756 CHMP7Q8WUX9 453 aaPredicted RBP18.85■□□□□ 0.61
MCF2L-213ENST00000421756 CASKIN1Q8WXD9 1431 aa18.85■□□□□ 0.61
MCF2L-213ENST00000421756 IRX6P78412 446 aaPredicted RBP18.84■□□□□ 0.61
MCF2L-213ENST00000421756 NCOA2Q15596 1464 aa18.79■□□□□ 0.6
MCF2L-213ENST00000421756 CCDC18Q5T9S5 1454 aa18.78■□□□□ 0.6
MCF2L-213ENST00000421756 FYCO1Q9BQS8 1478 aa18.77■□□□□ 0.6
MCF2L-213ENST00000421756 ZNF608Q9ULD9 1512 aaPredicted RBP18.76■□□□□ 0.59
MCF2L-213ENST00000421756 SLC4A1APQ9BWU0 796 aaKnown RBP18.75■□□□□ 0.59
MCF2L-213ENST00000421756 CDK13Q14004 1512 aaKnown RBP18.75■□□□□ 0.59
MCF2L-213ENST00000421756 PRDM2Q13029 1718 aa18.74■□□□□ 0.59
MCF2L-213ENST00000421756 HNRNPUQ00839 825 aaKnown RBP eCLIP18.73■□□□□ 0.59
MCF2L-213ENST00000421756 MPHOSPH9Q99550 1183 aa18.73■□□□□ 0.59
MCF2L-213ENST00000421756 HSPA5P11021 654 aaKnown RBP18.73■□□□□ 0.59
MCF2L-213ENST00000421756 L3MBTL2Q969R5 705 aa18.72■□□□□ 0.59
MCF2L-213ENST00000421756 FAM9BQ8IZU0 186 aa18.71■□□□□ 0.59
MCF2L-213ENST00000421756 MYOM3Q5VTT5 1437 aa18.71■□□□□ 0.59
MCF2L-213ENST00000421756 CFDP1Q9UEE9 299 aaPredicted RBP18.7■□□□□ 0.58
MCF2L-213ENST00000421756 NEFLP07196 543 aa18.69■□□□□ 0.58
MCF2L-213ENST00000421756 KDM2AQ9Y2K7 1162 aa18.69■□□□□ 0.58
MCF2L-213ENST00000421756 ERCC6Q03468 1493 aa18.68■□□□□ 0.58
MCF2L-213ENST00000421756 SNAPC4Q5SXM2 1469 aa18.68■□□□□ 0.58
MCF2L-213ENST00000421756 KIF21AQ7Z4S6 1674 aa18.68■□□□□ 0.58
MCF2L-213ENST00000421756 NAIPQ13075 1403 aa18.67■□□□□ 0.58
MCF2L-213ENST00000421756 LAMC3Q9Y6N6 1575 aa18.66■□□□□ 0.58
MCF2L-213ENST00000421756 EFCAB5A4FU69 1503 aa18.65■□□□□ 0.58
MCF2L-213ENST00000421756 MAP3K1Q13233 1512 aa18.65■□□□□ 0.58
MCF2L-213ENST00000421756 CCDC184Q52MB2 194 aa18.63■□□□□ 0.57
MCF2L-213ENST00000421756 CDK11AQ9UQ88 783 aaPredicted RBP18.63■□□□□ 0.57
MCF2L-213ENST00000421756 EIF4G2P78344 907 aaKnown RBP eCLIP18.62■□□□□ 0.57
MCF2L-213ENST00000421756 MAGI3Q5TCQ9 1506 aa18.62■□□□□ 0.57
MCF2L-213ENST00000421756 CUL7Q14999 1698 aa18.61■□□□□ 0.57
MCF2L-213ENST00000421756 C11orf95C9JLR9 678 aaPredicted RBP18.61■□□□□ 0.57
MCF2L-213ENST00000421756 UACAQ9BZF9 1416 aa18.6■□□□□ 0.57
MCF2L-213ENST00000421756 HFM1A2PYH4 1435 aa18.6■□□□□ 0.57
MCF2L-213ENST00000421756 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.6■□□□□ 0.577e-7■■□□□ 14.2
MCF2L-213ENST00000421756 CFAP43Q8NDM7 1665 aa18.59■□□□□ 0.57
MCF2L-213ENST00000421756 CTTNBP2Q8WZ74 1663 aa18.59■□□□□ 0.57
MCF2L-213ENST00000421756 JPH4Q96JJ6 628 aa18.58■□□□□ 0.57
MCF2L-213ENST00000421756 GRIN2BQ13224 1484 aa18.58■□□□□ 0.57
MCF2L-213ENST00000421756 NBPF8Q3BBV2 869 aa18.58■□□□□ 0.57
MCF2L-213ENST00000421756 WASHC2AQ641Q2 1341 aa18.58■□□□□ 0.56
MCF2L-213ENST00000421756 PRG4Q92954 1404 aaPredicted RBP18.57■□□□□ 0.56
MCF2L-213ENST00000421756 EPRSP07814 1512 aaKnown RBP18.56■□□□□ 0.56
MCF2L-213ENST00000421756 TIMELESSQ9UNS1 1208 aa18.56■□□□□ 0.56
MCF2L-213ENST00000421756 HNRNPMP52272 730 aaKnown RBP eCLIP18.55■□□□□ 0.56
MCF2L-213ENST00000421756 PKD2Q13563 968 aa18.54■□□□□ 0.56
MCF2L-213ENST00000421756 RGL3Q3MIN7 710 aa18.54■□□□□ 0.56
MCF2L-213ENST00000421756 THOC2Q8NI27 1593 aaKnown RBP18.54■□□□□ 0.56
MCF2L-213ENST00000421756 MRS2Q9HD23 443 aa18.53■□□□□ 0.56
MCF2L-213ENST00000421756 SALL2Q9Y467 1007 aaPredicted RBP18.53■□□□□ 0.56
MCF2L-213ENST00000421756 ABCA5Q8WWZ7 1642 aa18.53■□□□□ 0.56
MCF2L-213ENST00000421756 PLEKHD1A6NEE1 506 aa18.52■□□□□ 0.56
MCF2L-213ENST00000421756 PTPN23Q9H3S7 1636 aa18.51■□□□□ 0.55
MCF2L-213ENST00000421756 MRC2Q9UBG0 1479 aa18.51■□□□□ 0.55
MCF2L-213ENST00000421756 TSHZ2Q9NRE2 1034 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms