RNA–Protein interactions for RNA: ENST00000417496.6

HDAC9-208, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-208ENST00000417496 LRRC9Q6ZRR7 1453 aa21■□□□□ 0.95
HDAC9-208ENST00000417496 FANCD2Q9BXW9 1451 aa21■□□□□ 0.95
HDAC9-208ENST00000417496 SIN3AQ96ST3 1273 aa20.98■□□□□ 0.95
HDAC9-208ENST00000417496 CC2D2AQ9P2K1 1620 aa20.98■□□□□ 0.95
HDAC9-208ENST00000417496 FHOD3Q2V2M9 1422 aa20.96■□□□□ 0.95
HDAC9-208ENST00000417496 MAPKBP1O60336 1514 aa20.95■□□□□ 0.94
HDAC9-208ENST00000417496 SETD5Q9C0A6 1442 aa20.95■□□□□ 0.94
HDAC9-208ENST00000417496 NESP48681 1621 aa20.93■□□□□ 0.94
HDAC9-208ENST00000417496 MAP3K1Q13233 1512 aa20.92■□□□□ 0.94
HDAC9-208ENST00000417496 KCNH8Q96L42 1107 aa20.92■□□□□ 0.94
HDAC9-208ENST00000417496 FHAD1B1AJZ9 1412 aa20.91■□□□□ 0.94
HDAC9-208ENST00000417496 PCF11O94913 1555 aaKnown RBP20.89■□□□□ 0.94
HDAC9-208ENST00000417496 POLA1P09884 1462 aaPredicted RBP20.88■□□□□ 0.93
HDAC9-208ENST00000417496 TOPBP1Q92547 1522 aa20.85■□□□□ 0.93
HDAC9-208ENST00000417496 HIRIP3Q9BW71 556 aaPredicted RBP20.84■□□□□ 0.93
HDAC9-208ENST00000417496 ABCA10Q8WWZ4 1543 aa20.83■□□□□ 0.93
HDAC9-208ENST00000417496 DNMBPQ6XZF7 1577 aa20.81■□□□□ 0.92
HDAC9-208ENST00000417496 DDX10Q13206 875 aaKnown RBP20.81■□□□□ 0.92
HDAC9-208ENST00000417496 WDR97A6NE52 1622 aa20.79■□□□□ 0.92
HDAC9-208ENST00000417496 TDRD9Q8NDG6 1382 aaKnown RBP20.79■□□□□ 0.92
HDAC9-208ENST00000417496 SUPT16HQ9Y5B9 1047 aaKnown RBP20.78■□□□□ 0.92
HDAC9-208ENST00000417496 CFAP43Q8NDM7 1665 aa20.76■□□□□ 0.91
HDAC9-208ENST00000417496 CASKIN1Q8WXD9 1431 aa20.76■□□□□ 0.91
HDAC9-208ENST00000417496 DNAJC5BQ9UF47 199 aa20.76■□□□□ 0.91
HDAC9-208ENST00000417496 FYCO1Q9BQS8 1478 aa20.75■□□□□ 0.91
HDAC9-208ENST00000417496 URB2Q14146 1524 aaKnown RBP20.7■□□□□ 0.9
HDAC9-208ENST00000417496 MTUS2Q5JR59 1369 aa20.7■□□□□ 0.9
HDAC9-208ENST00000417496 EFCAB5A4FU69 1503 aa20.69■□□□□ 0.9
HDAC9-208ENST00000417496 PPP1R15AO75807 674 aaPredicted RBP20.69■□□□□ 0.9
HDAC9-208ENST00000417496 FMN1Q68DA7 1419 aa20.67■□□□□ 0.9
HDAC9-208ENST00000417496 FGD6Q6ZV73 1430 aa20.67■□□□□ 0.9
HDAC9-208ENST00000417496 PTPRKQ15262 1439 aa20.67■□□□□ 0.9
HDAC9-208ENST00000417496 AQRO60306 1485 aaKnown RBP eCLIP20.66■□□□□ 0.9
HDAC9-208ENST00000417496 SNAPC4Q5SXM2 1469 aa20.65■□□□□ 0.9
HDAC9-208ENST00000417496 CUL7Q14999 1698 aa20.64■□□□□ 0.9
HDAC9-208ENST00000417496 CTTNBP2Q8WZ74 1663 aa20.62■□□□□ 0.89
HDAC9-208ENST00000417496 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.62■□□□□ 0.89
HDAC9-208ENST00000417496 TIMELESSQ9UNS1 1208 aa20.61■□□□□ 0.89
HDAC9-208ENST00000417496 GAPVD1Q14C86 1478 aa20.6■□□□□ 0.89
HDAC9-208ENST00000417496 CCDC18Q5T9S5 1454 aa20.58■□□□□ 0.88
HDAC9-208ENST00000417496 TONSLQ96HA7 1378 aa20.57■□□□□ 0.88
HDAC9-208ENST00000417496 ARID3CA6NKF2 412 aa20.57■□□□□ 0.88
HDAC9-208ENST00000417496 CHIC2Q9UKJ5 165 aa20.57■□□□□ 0.88
HDAC9-208ENST00000417496 NCOA2Q15596 1464 aa20.56■□□□□ 0.88
HDAC9-208ENST00000417496 BCANQ96GW7 911 aa20.55■□□□□ 0.88
HDAC9-208ENST00000417496 RRP7BPQ9NSQ0 103 aa20.55■□□□□ 0.88
HDAC9-208ENST00000417496 HFM1A2PYH4 1435 aa20.54■□□□□ 0.88
HDAC9-208ENST00000417496 TRIM52Q96A61 297 aa20.53■□□□□ 0.88
HDAC9-208ENST00000417496 LAMC3Q9Y6N6 1575 aa20.52■□□□□ 0.88
HDAC9-208ENST00000417496 LRRIQ1Q96JM4 1722 aa20.52■□□□□ 0.88
HDAC9-208ENST00000417496 NAIPQ13075 1403 aa20.52■□□□□ 0.87
HDAC9-208ENST00000417496 MYOM3Q5VTT5 1437 aa20.52■□□□□ 0.87
HDAC9-208ENST00000417496 ABCA5Q8WWZ7 1642 aa20.51■□□□□ 0.87
HDAC9-208ENST00000417496 GRIN2BQ13224 1484 aa20.51■□□□□ 0.87
HDAC9-208ENST00000417496 UACAQ9BZF9 1416 aa20.51■□□□□ 0.87
HDAC9-208ENST00000417496 SAMD9Q5K651 1589 aa20.5■□□□□ 0.87
HDAC9-208ENST00000417496 PDS5BQ9NTI5 1447 aa20.49■□□□□ 0.87
HDAC9-208ENST00000417496 ANP32CO43423 234 aa20.49■□□□□ 0.87
HDAC9-208ENST00000417496 PTPN23Q9H3S7 1636 aa20.48■□□□□ 0.87
HDAC9-208ENST00000417496 FKBP8Q14318 412 aa20.47■□□□□ 0.87
HDAC9-208ENST00000417496 MAGI3Q5TCQ9 1506 aa20.46■□□□□ 0.87
HDAC9-208ENST00000417496 TSHZ2Q9NRE2 1034 aa20.44■□□□□ 0.86
HDAC9-208ENST00000417496 CCER2I3L3R5 266 aa20.4■□□□□ 0.86
HDAC9-208ENST00000417496 SUPT6HQ7KZ85 1726 aaKnown RBP20.4■□□□□ 0.86
HDAC9-208ENST00000417496 FOXD1Q16676 465 aa20.4■□□□□ 0.86
HDAC9-208ENST00000417496 KIF21AQ7Z4S6 1674 aa20.39■□□□□ 0.85
HDAC9-208ENST00000417496 EHBP1L1Q8N3D4 1523 aa20.38■□□□□ 0.85
HDAC9-208ENST00000417496 UGGT2Q9NYU1 1516 aa20.38■□□□□ 0.85
HDAC9-208ENST00000417496 TARBP1Q13395 1621 aaKnown RBP20.36■□□□□ 0.85
HDAC9-208ENST00000417496 CDK13Q14004 1512 aaKnown RBP20.34■□□□□ 0.85
HDAC9-208ENST00000417496 KDM5BQ9UGL1 1544 aa20.34■□□□□ 0.85
HDAC9-208ENST00000417496 ARHGEF11O15085 1522 aa20.33■□□□□ 0.85
HDAC9-208ENST00000417496 THOC2Q8NI27 1593 aaKnown RBP20.33■□□□□ 0.84
HDAC9-208ENST00000417496 DENND4BO75064 1496 aaPredicted RBP20.33■□□□□ 0.84
HDAC9-208ENST00000417496 HSPA5P11021 654 aaKnown RBP20.32■□□□□ 0.84
HDAC9-208ENST00000417496 EPRSP07814 1512 aaKnown RBP20.32■□□□□ 0.84
HDAC9-208ENST00000417496 MPHOSPH9Q99550 1183 aa20.31■□□□□ 0.84
HDAC9-208ENST00000417496 KDM6BO15054 1643 aa20.3■□□□□ 0.84
HDAC9-208ENST00000417496 WASHC2AQ641Q2 1341 aa20.3■□□□□ 0.84
HDAC9-208ENST00000417496 ZNF644Q9H582 1327 aaPredicted RBP20.28■□□□□ 0.84
HDAC9-208ENST00000417496 L3MBTL2Q969R5 705 aa20.27■□□□□ 0.84
HDAC9-208ENST00000417496 IQGAP2Q13576 1575 aa20.27■□□□□ 0.84
HDAC9-208ENST00000417496 TCOF1Q13428 1488 aaKnown RBP20.27■□□□□ 0.83
HDAC9-208ENST00000417496 NEFLP07196 543 aa20.26■□□□□ 0.83
HDAC9-208ENST00000417496 MYT1Q01538 1121 aa20.26■□□□□ 0.83
HDAC9-208ENST00000417496 HECW1Q76N89 1606 aa20.25■□□□□ 0.83
HDAC9-208ENST00000417496 HNRNPUQ00839 825 aaKnown RBP eCLIP20.23■□□□□ 0.83
HDAC9-208ENST00000417496 ZNF608Q9ULD9 1512 aaPredicted RBP20.23■□□□□ 0.83
HDAC9-208ENST00000417496 C11orf95C9JLR9 678 aaPredicted RBP20.22■□□□□ 0.83
HDAC9-208ENST00000417496 EIF4G2P78344 907 aaKnown RBP eCLIP20.22■□□□□ 0.83
HDAC9-208ENST00000417496 PBRM1Q86U86 1689 aa20.22■□□□□ 0.83
HDAC9-208ENST00000417496 CCDC184Q52MB2 194 aa20.2■□□□□ 0.82
HDAC9-208ENST00000417496 ADAMTS12P58397 1594 aa20.2■□□□□ 0.82
HDAC9-208ENST00000417496 MIA2Q96PC5 1412 aa20.19■□□□□ 0.82
HDAC9-208ENST00000417496 WDR62O43379 1518 aa20.19■□□□□ 0.82
HDAC9-208ENST00000417496 NBPF8Q3BBV2 869 aa20.17■□□□□ 0.82
HDAC9-208ENST00000417496 IRX6P78412 446 aaPredicted RBP20.17■□□□□ 0.82
HDAC9-208ENST00000417496 GCC2Q8IWJ2 1684 aa20.16■□□□□ 0.82
HDAC9-208ENST00000417496 MRC2Q9UBG0 1479 aa20.15■□□□□ 0.82
HDAC9-208ENST00000417496 SLC4A1APQ9BWU0 796 aaKnown RBP20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms