RNA–Protein interactions for RNA: ENST00000415357.1

LINC01090-201, Transcript of long intergenic non-protein coding RNA 1090, humanhuman

TSL 3 BASIC

Gene LINC01090, Length 881 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01090-201ENST00000415357 PBRM1Q86U86 1689 aa16.81■□□□□ 0.28
LINC01090-201ENST00000415357 GAPVD1Q14C86 1478 aa16.81■□□□□ 0.28
LINC01090-201ENST00000415357 ZBTB22O15209 634 aa16.8■□□□□ 0.28
LINC01090-201ENST00000415357 FOXD4L1Q9NU39 408 aa16.8■□□□□ 0.28
LINC01090-201ENST00000415357 MAGI1Q96QZ7 1491 aaPredicted RBP16.78■□□□□ 0.28
LINC01090-201ENST00000415357 TRIM41Q8WV44 630 aa16.75■□□□□ 0.27
LINC01090-201ENST00000415357 RIMBP3CA6NJZ7 1639 aa16.74■□□□□ 0.27
LINC01090-201ENST00000415357 RIMBP3BA6NNM3 1639 aa16.74■□□□□ 0.27
LINC01090-201ENST00000415357 RIMBP3Q9UFD9 1639 aa16.74■□□□□ 0.27
LINC01090-201ENST00000415357 SYNJ2O15056 1496 aa16.73■□□□□ 0.27
LINC01090-201ENST00000415357 CHMP7Q8WUX9 453 aaPredicted RBP16.72■□□□□ 0.27
LINC01090-201ENST00000415357 ARHGEF11O15085 1522 aa16.71■□□□□ 0.27
LINC01090-201ENST00000415357 ADAMTS12P58397 1594 aa16.68■□□□□ 0.26
LINC01090-201ENST00000415357 CLASP1Q7Z460 1538 aa16.67■□□□□ 0.26
LINC01090-201ENST00000415357 CSRNP3Q8WYN3 585 aa16.67■□□□□ 0.26
LINC01090-201ENST00000415357 U3KPZ7 1027 aaPredicted RBP16.65■□□□□ 0.26
LINC01090-201ENST00000415357 RNF39Q9H2S5 420 aa16.63■□□□□ 0.25
LINC01090-201ENST00000415357 ERICH3Q5RHP9 1530 aa16.63■□□□□ 0.25
LINC01090-201ENST00000415357 GRIN2AQ12879 1464 aa16.62■□□□□ 0.25
LINC01090-201ENST00000415357 FHAD1B1AJZ9 1412 aa16.6■□□□□ 0.25
LINC01090-201ENST00000415357 ARAP1Q96P48 1450 aa16.59■□□□□ 0.25
LINC01090-201ENST00000415357 CEP170Q5SW79 1584 aa16.57■□□□□ 0.24
LINC01090-201ENST00000415357 MYCNP04198 464 aaPredicted RBP16.57■□□□□ 0.24
LINC01090-201ENST00000415357 CYB5RLQ6IPT4 315 aa16.55■□□□□ 0.24
LINC01090-201ENST00000415357 NUP160Q12769 1436 aa16.54■□□□□ 0.24
LINC01090-201ENST00000415357 KIF27Q86VH2 1401 aa16.54■□□□□ 0.24
LINC01090-201ENST00000415357 IGF1RP08069 1367 aa16.5■□□□□ 0.23
LINC01090-201ENST00000415357 ERCC6L2Q5T890 1561 aa16.48■□□□□ 0.23
LINC01090-201ENST00000415357 CUL7Q14999 1698 aa16.46■□□□□ 0.23
LINC01090-201ENST00000415357 SHROOM2Q13796 1616 aa16.44■□□□□ 0.22
LINC01090-201ENST00000415357 RUSC2Q8N2Y8 1516 aa16.44■□□□□ 0.22
LINC01090-201ENST00000415357 C1QBPQ07021 282 aaKnown RBP16.42■□□□□ 0.22
LINC01090-201ENST00000415357 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.4■□□□□ 0.22
LINC01090-201ENST00000415357 HNRNPUL2Q1KMD3 747 aaKnown RBP16.4■□□□□ 0.22
LINC01090-201ENST00000415357 CARMIL1Q5VZK9 1371 aa16.39■□□□□ 0.21
LINC01090-201ENST00000415357 PRG4Q92954 1404 aaPredicted RBP16.36■□□□□ 0.21
LINC01090-201ENST00000415357 SAMD1Q6SPF0 538 aaPredicted RBP16.35■□□□□ 0.21
LINC01090-201ENST00000415357 JPH4Q96JJ6 628 aa16.35■□□□□ 0.21
LINC01090-201ENST00000415357 KIAA0586Q9BVV6 1533 aa16.34■□□□□ 0.21
LINC01090-201ENST00000415357 RAPGEF2Q9Y4G8 1499 aa16.29■□□□□ 0.2
LINC01090-201ENST00000415357 TRHP20396 242 aaPredicted RBP16.26■□□□□ 0.19
LINC01090-201ENST00000415357 CACNB1Q02641 598 aaPredicted RBP16.26■□□□□ 0.19
LINC01090-201ENST00000415357 IQGAP2Q13576 1575 aa16.25■□□□□ 0.19
LINC01090-201ENST00000415357 APLP2Q06481 763 aa16.23■□□□□ 0.19
LINC01090-201ENST00000415357 SPINK5Q9NQ38 1064 aaPredicted RBP16.21■□□□□ 0.19
LINC01090-201ENST00000415357 PRXQ9BXM0 1461 aa16.2■□□□□ 0.18
LINC01090-201ENST00000415357 TTBK1Q5TCY1 1321 aaPredicted RBP16.18■□□□□ 0.18
LINC01090-201ENST00000415357 CAPN15O75808 1086 aa16.17■□□□□ 0.18
LINC01090-201ENST00000415357 CTTNBP2Q8WZ74 1663 aa16.16■□□□□ 0.18
LINC01090-201ENST00000415357 ADCY10Q96PN6 1610 aa16.16■□□□□ 0.18
LINC01090-201ENST00000415357 DISP1Q96F81 1524 aa16.15■□□□□ 0.18
LINC01090-201ENST00000415357 CARMIL2Q6F5E8 1435 aa16.15■□□□□ 0.18
LINC01090-201ENST00000415357 ATF5Q9Y2D1 282 aaPredicted RBP16.15■□□□□ 0.18
LINC01090-201ENST00000415357 UGGT2Q9NYU1 1516 aa16.14■□□□□ 0.18
LINC01090-201ENST00000415357 ATXN8OSP0DMR3 200 aa16.14■□□□□ 0.17
LINC01090-201ENST00000415357 PTPRGP23470 1445 aa16.13■□□□□ 0.17
LINC01090-201ENST00000415357 TNIKQ9UKE5 1360 aa16.13■□□□□ 0.17
LINC01090-201ENST00000415357 FAM9AQ8IZU1 332 aaPredicted RBP16.12■□□□□ 0.17
LINC01090-201ENST00000415357 KIAA0556O60303 1618 aa16.11■□□□□ 0.17
LINC01090-201ENST00000415357 EEA1Q15075 1411 aa16.11■□□□□ 0.17
LINC01090-201ENST00000415357 NPM1P06748 294 aaKnown RBP eCLIP16.05■□□□□ 0.16
LINC01090-201ENST00000415357 MAPKBP1O60336 1514 aa16.04■□□□□ 0.16
LINC01090-201ENST00000415357 KIF13AQ9H1H9 1805 aa16.04■□□□□ 0.16
LINC01090-201ENST00000415357 ZNF219Q9P2Y4 722 aaPredicted RBP16.04■□□□□ 0.16
LINC01090-201ENST00000415357 ABCC2Q92887 1545 aa16.02■□□□□ 0.15
LINC01090-201ENST00000415357 GOLGA3Q08378 1498 aa16.02■□□□□ 0.15
LINC01090-201ENST00000415357 UACAQ9BZF9 1416 aa16.02■□□□□ 0.15
LINC01090-201ENST00000415357 UHRF1BP1LA0JNW5 1464 aa16.01■□□□□ 0.15
LINC01090-201ENST00000415357 KIF21BO75037 1637 aa16■□□□□ 0.15
LINC01090-201ENST00000415357 DIP2BQ9P265 1576 aa16■□□□□ 0.15
LINC01090-201ENST00000415357 ABCC10Q5T3U5 1492 aa15.99■□□□□ 0.15
LINC01090-201ENST00000415357 PLB1Q6P1J6 1458 aa15.97■□□□□ 0.15
LINC01090-201ENST00000415357 FAM69CQ0P6D2 419 aa15.97■□□□□ 0.15
LINC01090-201ENST00000415357 P3H3Q8IVL6 736 aa15.97■□□□□ 0.15
LINC01090-201ENST00000415357 SAMD9Q5K651 1589 aa15.95■□□□□ 0.14
LINC01090-201ENST00000415357 ASXL2Q76L83 1435 aa15.94■□□□□ 0.14
LINC01090-201ENST00000415357 KDM5BQ9UGL1 1544 aa15.94■□□□□ 0.14
LINC01090-201ENST00000415357 ZCCHC11Q5TAX3 1644 aaKnown RBP15.94■□□□□ 0.14
LINC01090-201ENST00000415357 RANGAP1P46060 587 aaPredicted RBP15.94■□□□□ 0.14
LINC01090-201ENST00000415357 ABCA8O94911 1581 aa15.94■□□□□ 0.14
LINC01090-201ENST00000415357 FHOD3Q2V2M9 1422 aa15.88■□□□□ 0.13
LINC01090-201ENST00000415357 ABCB7O75027 752 aa15.88■□□□□ 0.13
LINC01090-201ENST00000415357 TSPOAP1O95153 1857 aa15.87■□□□□ 0.13
LINC01090-201ENST00000415357 ARID3CA6NKF2 412 aa15.85■□□□□ 0.13
LINC01090-201ENST00000415357 UBTFP17480 764 aaKnown RBP15.85■□□□□ 0.13
LINC01090-201ENST00000415357 EPRSP07814 1512 aaKnown RBP15.84■□□□□ 0.13
LINC01090-201ENST00000415357 DSG3P32926 999 aa15.84■□□□□ 0.13
LINC01090-201ENST00000415357 GLI2P10070 1586 aa15.83■□□□□ 0.13
LINC01090-201ENST00000415357 WDR7Q9Y4E6 1490 aa15.83■□□□□ 0.12
LINC01090-201ENST00000415357 RAPGEF6Q8TEU7 1601 aa15.83■□□□□ 0.12
LINC01090-201ENST00000415357 EFCAB5A4FU69 1503 aa15.82■□□□□ 0.12
LINC01090-201ENST00000415357 PPRC1Q5VV67 1664 aaKnown RBP15.81■□□□□ 0.12
LINC01090-201ENST00000415357 ATP10BO94823 1461 aa15.8■□□□□ 0.12
LINC01090-201ENST00000415357 POLA2Q14181 598 aa15.79■□□□□ 0.12
LINC01090-201ENST00000415357 MAP3K4Q9Y6R4 1608 aa15.79■□□□□ 0.12
LINC01090-201ENST00000415357 NUP153P49790 1475 aaKnown RBP15.78■□□□□ 0.12
LINC01090-201ENST00000415357 KDM6BO15054 1643 aa15.77■□□□□ 0.12
LINC01090-201ENST00000415357 KCNH8Q96L42 1107 aa15.76■□□□□ 0.11
LINC01090-201ENST00000415357 ARHGAP35Q9NRY4 1499 aa15.76■□□□□ 0.11
LINC01090-201ENST00000415357 CFAP43Q8NDM7 1665 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms