RNA–Protein interactions for RNA: ENST00000413852.5

SEMA3F-202, Transcript of semaphorin 3F, humanhuman

TSL 1 (best) BASIC

Gene SEMA3F, Length 3,212 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3F-202ENST00000413852 BIVM-ERCC5R4GMW8 1640 aa20.79■□□□□ 0.92
SEMA3F-202ENST00000413852 PHLDB1Q86UU1 1377 aa20.79■□□□□ 0.92
SEMA3F-202ENST00000413852 CUX2O14529 1486 aa20.75■□□□□ 0.91
SEMA3F-202ENST00000413852 IRX6P78412 446 aaPredicted RBP20.74■□□□□ 0.91
SEMA3F-202ENST00000413852 PPP1R15AO75807 674 aaPredicted RBP20.74■□□□□ 0.91
SEMA3F-202ENST00000413852 SETD5Q9C0A6 1442 aa20.74■□□□□ 0.91
SEMA3F-202ENST00000413852 IGF1RP08069 1367 aa20.69■□□□□ 0.9
SEMA3F-202ENST00000413852 RBM19Q9Y4C8 960 aaKnown RBP20.68■□□□□ 0.9
SEMA3F-202ENST00000413852 NEFLP07196 543 aa20.64■□□□□ 0.89
SEMA3F-202ENST00000413852 ANP32CO43423 234 aa20.63■□□□□ 0.89
SEMA3F-202ENST00000413852 TIAM1Q13009 1591 aa20.62■□□□□ 0.89
SEMA3F-202ENST00000413852 LRRC9Q6ZRR7 1453 aa20.61■□□□□ 0.89
SEMA3F-202ENST00000413852 CARMIL1Q5VZK9 1371 aa20.61■□□□□ 0.89
SEMA3F-202ENST00000413852 FHOD3Q2V2M9 1422 aa20.57■□□□□ 0.88
SEMA3F-202ENST00000413852 BCL11AQ9H165 835 aa20.55■□□□□ 0.88
SEMA3F-202ENST00000413852 MSH5O43196 834 aa20.54■□□□□ 0.88
SEMA3F-202ENST00000413852 CFTRP13569 1480 aa20.53■□□□□ 0.88
SEMA3F-202ENST00000413852 HNRNPUQ00839 825 aaKnown RBP eCLIP20.52■□□□□ 0.88
SEMA3F-202ENST00000413852 NCAPD3P42695 1498 aa20.49■□□□□ 0.87
SEMA3F-202ENST00000413852 TONSLQ96HA7 1378 aa20.48■□□□□ 0.87
SEMA3F-202ENST00000413852 PCF11O94913 1555 aaKnown RBP20.48■□□□□ 0.87
SEMA3F-202ENST00000413852 CNGB1Q14028 1251 aaPredicted RBP20.46■□□□□ 0.87
SEMA3F-202ENST00000413852 FGD5Q6ZNL6 1462 aa20.46■□□□□ 0.87
SEMA3F-202ENST00000413852 CCDC184Q52MB2 194 aa20.46■□□□□ 0.87
SEMA3F-202ENST00000413852 CCER2I3L3R5 266 aa20.45■□□□□ 0.86
SEMA3F-202ENST00000413852 CHIC2Q9UKJ5 165 aa20.44■□□□□ 0.86
SEMA3F-202ENST00000413852 SENP3-EIF4A1A0A087X0R7 540 aa20.44■□□□□ 0.86
SEMA3F-202ENST00000413852 PTPRKQ15262 1439 aa20.43■□□□□ 0.86
SEMA3F-202ENST00000413852 RRP7BPQ9NSQ0 103 aa20.4■□□□□ 0.86
SEMA3F-202ENST00000413852 ARID3CA6NKF2 412 aa20.4■□□□□ 0.86
SEMA3F-202ENST00000413852 RAD54L2Q9Y4B4 1467 aa20.4■□□□□ 0.86
SEMA3F-202ENST00000413852 HMGXB3Q12766 1538 aa20.38■□□□□ 0.85
SEMA3F-202ENST00000413852 AQRO60306 1485 aaKnown RBP eCLIP20.38■□□□□ 0.85
SEMA3F-202ENST00000413852 FOXD1Q16676 465 aa20.38■□□□□ 0.85
SEMA3F-202ENST00000413852 FHAD1B1AJZ9 1412 aa20.36■□□□□ 0.85
SEMA3F-202ENST00000413852 HSPA5P11021 654 aaKnown RBP20.34■□□□□ 0.85
SEMA3F-202ENST00000413852 MAP3K1Q13233 1512 aa20.33■□□□□ 0.85
SEMA3F-202ENST00000413852 CCDC18Q5T9S5 1454 aa20.33■□□□□ 0.85
SEMA3F-202ENST00000413852 FAM9BQ8IZU0 186 aa20.33■□□□□ 0.84
SEMA3F-202ENST00000413852 WASHC2AQ641Q2 1341 aa20.33■□□□□ 0.84
SEMA3F-202ENST00000413852 TIMELESSQ9UNS1 1208 aa20.32■□□□□ 0.84
SEMA3F-202ENST00000413852 CADPSQ9ULU8 1353 aa20.31■□□□□ 0.84
SEMA3F-202ENST00000413852 MTUS2Q5JR59 1369 aa20.31■□□□□ 0.84
SEMA3F-202ENST00000413852 FGD6Q6ZV73 1430 aa20.3■□□□□ 0.84
SEMA3F-202ENST00000413852 C11orf95C9JLR9 678 aaPredicted RBP20.3■□□□□ 0.84
SEMA3F-202ENST00000413852 B4GALNT3Q6L9W6 998 aa20.28■□□□□ 0.84
SEMA3F-202ENST00000413852 CFAP43Q8NDM7 1665 aa20.27■□□□□ 0.84
SEMA3F-202ENST00000413852 CDK11AQ9UQ88 783 aaPredicted RBP20.27■□□□□ 0.83
SEMA3F-202ENST00000413852 CASKIN1Q8WXD9 1431 aa20.22■□□□□ 0.83
SEMA3F-202ENST00000413852 NAIPQ13075 1403 aa20.21■□□□□ 0.83
SEMA3F-202ENST00000413852 UACAQ9BZF9 1416 aa20.21■□□□□ 0.83
SEMA3F-202ENST00000413852 ERICH6Q7L0X2 663 aa20.21■□□□□ 0.83
SEMA3F-202ENST00000413852 FYCO1Q9BQS8 1478 aa20.2■□□□□ 0.82
SEMA3F-202ENST00000413852 KDM5BQ9UGL1 1544 aa20.18■□□□□ 0.82
SEMA3F-202ENST00000413852 POLR3GLQ9BT43 218 aa20.17■□□□□ 0.82
SEMA3F-202ENST00000413852 TDRD9Q8NDG6 1382 aaKnown RBP20.17■□□□□ 0.82
SEMA3F-202ENST00000413852 HFM1A2PYH4 1435 aa20.17■□□□□ 0.82
SEMA3F-202ENST00000413852 PTPN23Q9H3S7 1636 aa20.17■□□□□ 0.82
SEMA3F-202ENST00000413852 L3MBTL2Q969R5 705 aa20.17■□□□□ 0.82
SEMA3F-202ENST00000413852 FANCD2Q9BXW9 1451 aa20.17■□□□□ 0.82
SEMA3F-202ENST00000413852 NESP48681 1621 aa20.16■□□□□ 0.82
SEMA3F-202ENST00000413852 MRS2Q9HD23 443 aa20.16■□□□□ 0.82
SEMA3F-202ENST00000413852 NCOA2Q15596 1464 aa20.14■□□□□ 0.82
SEMA3F-202ENST00000413852 EIF4G2P78344 907 aaKnown RBP eCLIP20.14■□□□□ 0.81
SEMA3F-202ENST00000413852 POLA1P09884 1462 aaPredicted RBP20.12■□□□□ 0.81
SEMA3F-202ENST00000413852 SNAPC4Q5SXM2 1469 aa20.11■□□□□ 0.81
SEMA3F-202ENST00000413852 NBPF8Q3BBV2 869 aa20.11■□□□□ 0.81
SEMA3F-202ENST00000413852 DENND4BO75064 1496 aaPredicted RBP20.1■□□□□ 0.81
SEMA3F-202ENST00000413852 KDM6BO15054 1643 aa20.09■□□□□ 0.81
SEMA3F-202ENST00000413852 PRKRIP1Q9H875 184 aaPredicted RBP20.09■□□□□ 0.81
SEMA3F-202ENST00000413852 FANCIQ9NVI1 1328 aa20.09■□□□□ 0.81
SEMA3F-202ENST00000413852 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.09■□□□□ 0.81
SEMA3F-202ENST00000413852 PPP4R2Q9NY27 417 aa20.09■□□□□ 0.81
SEMA3F-202ENST00000413852 MPHOSPH9Q99550 1183 aa20.08■□□□□ 0.81
SEMA3F-202ENST00000413852 MYOM3Q5VTT5 1437 aa20.08■□□□□ 0.81
SEMA3F-202ENST00000413852 FMN1Q68DA7 1419 aa20.07■□□□□ 0.8
SEMA3F-202ENST00000413852 LRRIQ1Q96JM4 1722 aa20.07■□□□□ 0.8
SEMA3F-202ENST00000413852 NBR1Q14596 966 aa20.06■□□□□ 0.8
SEMA3F-202ENST00000413852 ZNF326Q5BKZ1 582 aaKnown RBP20.05■□□□□ 0.8
SEMA3F-202ENST00000413852 TOPBP1Q92547 1522 aa20.04■□□□□ 0.8
SEMA3F-202ENST00000413852 PRDM2Q13029 1718 aa20.04■□□□□ 0.8
SEMA3F-202ENST00000413852 MAGI3Q5TCQ9 1506 aa20.03■□□□□ 0.8
SEMA3F-202ENST00000413852 PAK3O75914 559 aaPredicted RBP20.03■□□□□ 0.8
SEMA3F-202ENST00000413852 CNTLNQ9NXG0 1405 aa20.02■□□□□ 0.8
SEMA3F-202ENST00000413852 EFCAB5A4FU69 1503 aa20.01■□□□□ 0.79
SEMA3F-202ENST00000413852 ABCA10Q8WWZ4 1543 aa20.01■□□□□ 0.79
SEMA3F-202ENST00000413852 CCDC7Q96M83 1385 aa20.01■□□□□ 0.79
SEMA3F-202ENST00000413852 DNAJC5BQ9UF47 199 aa20■□□□□ 0.79
SEMA3F-202ENST00000413852 ZNF644Q9H582 1327 aaPredicted RBP20■□□□□ 0.79
SEMA3F-202ENST00000413852 AKNAQ7Z591 1439 aa19.99■□□□□ 0.79
SEMA3F-202ENST00000413852 KIF7Q2M1P5 1343 aa19.99■□□□□ 0.79
SEMA3F-202ENST00000413852 GRIN2BQ13224 1484 aa19.96■□□□□ 0.79
SEMA3F-202ENST00000413852 CTTNBP2Q8WZ74 1663 aa19.95■□□□□ 0.78
SEMA3F-202ENST00000413852 DNMBPQ6XZF7 1577 aa19.94■□□□□ 0.78
SEMA3F-202ENST00000413852 DEKP35659 375 aaKnown RBP19.94■□□□□ 0.78
SEMA3F-202ENST00000413852 CC2D2AQ9P2K1 1620 aa19.92■□□□□ 0.78
SEMA3F-202ENST00000413852 ZBED9Q6R2W3 1325 aa19.92■□□□□ 0.78
SEMA3F-202ENST00000413852 SLC4A1APQ9BWU0 796 aaKnown RBP19.92■□□□□ 0.78
SEMA3F-202ENST00000413852 SALL2Q9Y467 1007 aaPredicted RBP19.91■□□□□ 0.78
SEMA3F-202ENST00000413852 NCOA1Q15788 1441 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms