RNA–Protein interactions for RNA: ENST00000409817.1

CXCR4-202, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS P3 BASIC

Gene CXCR4, Length 1,895 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-202ENST00000409817 CEP164Q9UPV0 1460 aa11.85□□□□□ -0.51
CXCR4-202ENST00000409817 KIF21BO75037 1637 aa11.85□□□□□ -0.51
CXCR4-202ENST00000409817 ABCB7O75027 752 aa11.85□□□□□ -0.51
CXCR4-202ENST00000409817 RUSC2Q8N2Y8 1516 aa11.84□□□□□ -0.51
CXCR4-202ENST00000409817 VASPP50552 380 aaPredicted RBP11.83□□□□□ -0.52
CXCR4-202ENST00000409817 CUX1P39880 1505 aa11.83□□□□□ -0.52
CXCR4-202ENST00000409817 TRIM26Q12899 539 aaPredicted RBP11.82□□□□□ -0.52
CXCR4-202ENST00000409817 PCGF6Q9BYE7 350 aa11.8□□□□□ -0.52
CXCR4-202ENST00000409817 CEP162Q5TB80 1403 aa11.79□□□□□ -0.52
CXCR4-202ENST00000409817 IFNLR1Q8IU57 520 aaPredicted RBP11.76□□□□□ -0.53
CXCR4-202ENST00000409817 LAMC3Q9Y6N6 1575 aa11.76□□□□□ -0.53
CXCR4-202ENST00000409817 KIF27Q86VH2 1401 aa11.76□□□□□ -0.53
CXCR4-202ENST00000409817 ZBTB12Q9Y330 459 aaPredicted RBP11.76□□□□□ -0.53
CXCR4-202ENST00000409817 ERICH3Q5RHP9 1530 aa11.75□□□□□ -0.53
CXCR4-202ENST00000409817 UBTFP17480 764 aaKnown RBP11.75□□□□□ -0.53
CXCR4-202ENST00000409817 FANCD2Q9BXW9 1451 aa11.75□□□□□ -0.53
CXCR4-202ENST00000409817 PRXQ9BXM0 1461 aa11.72□□□□□ -0.53
CXCR4-202ENST00000409817 DSG3P32926 999 aa11.72□□□□□ -0.53
CXCR4-202ENST00000409817 DNMBPQ6XZF7 1577 aa11.7□□□□□ -0.54
CXCR4-202ENST00000409817 RAPGEF2Q9Y4G8 1499 aa11.69□□□□□ -0.54
CXCR4-202ENST00000409817 FGD5Q6ZNL6 1462 aa11.68□□□□□ -0.54
CXCR4-202ENST00000409817 PDS5BQ9NTI5 1447 aa11.67□□□□□ -0.54
CXCR4-202ENST00000409817 HRCP23327 699 aa11.67□□□□□ -0.54
CXCR4-202ENST00000409817 CLIP1P30622 1438 aa11.66□□□□□ -0.54
CXCR4-202ENST00000409817 NESP48681 1621 aa11.65□□□□□ -0.54
CXCR4-202ENST00000409817 CUX2O14529 1486 aa11.64□□□□□ -0.55
CXCR4-202ENST00000409817 TOPBP1Q92547 1522 aa11.64□□□□□ -0.55
CXCR4-202ENST00000409817 ABCA10Q8WWZ4 1543 aa11.62□□□□□ -0.55
CXCR4-202ENST00000409817 OSCARQ8IYS5 282 aa11.61□□□□□ -0.55
CXCR4-202ENST00000409817 IGF1RP08069 1367 aa11.6□□□□□ -0.55
CXCR4-202ENST00000409817 POLA1P09884 1462 aaPredicted RBP11.6□□□□□ -0.55
CXCR4-202ENST00000409817 VPS8Q8N3P4 1428 aa11.6□□□□□ -0.55
CXCR4-202ENST00000409817 PKD2Q13563 968 aa11.59□□□□□ -0.55
CXCR4-202ENST00000409817 ZNF692Q9BU19 519 aaPredicted RBP11.58□□□□□ -0.56
CXCR4-202ENST00000409817 SSUH2Q9Y2M2 353 aa11.58□□□□□ -0.56
CXCR4-202ENST00000409817 URB2Q14146 1524 aaKnown RBP11.57□□□□□ -0.56
CXCR4-202ENST00000409817 CARMIL1Q5VZK9 1371 aa11.56□□□□□ -0.56
CXCR4-202ENST00000409817 CACNB1Q02641 598 aaPredicted RBP11.55□□□□□ -0.56
CXCR4-202ENST00000409817 SPDYE2BA6NHP3 402 aa11.55□□□□□ -0.56
CXCR4-202ENST00000409817 SPDYE6P0CI01 402 aa11.55□□□□□ -0.56
CXCR4-202ENST00000409817 SPDYE2Q495Y8 402 aa11.55□□□□□ -0.56
CXCR4-202ENST00000409817 WDR97A6NE52 1622 aa11.54□□□□□ -0.56
CXCR4-202ENST00000409817 CUL7Q14999 1698 aa11.53□□□□□ -0.56
CXCR4-202ENST00000409817 KIF21AQ7Z4S6 1674 aa11.53□□□□□ -0.56
CXCR4-202ENST00000409817 RAD54L2Q9Y4B4 1467 aa11.52□□□□□ -0.57
CXCR4-202ENST00000409817 ZEB1P37275 1124 aaPredicted RBP11.52□□□□□ -0.57
CXCR4-202ENST00000409817 PLCB2Q00722 1185 aa11.49□□□□□ -0.57
CXCR4-202ENST00000409817 ARAP1Q96P48 1450 aa11.49□□□□□ -0.57
CXCR4-202ENST00000409817 ABCA5Q8WWZ7 1642 aa11.49□□□□□ -0.57
CXCR4-202ENST00000409817 MRC2Q9UBG0 1479 aa11.49□□□□□ -0.57
CXCR4-202ENST00000409817 PPARGC1BQ86YN6 1023 aaKnown RBP11.47□□□□□ -0.57
CXCR4-202ENST00000409817 ARHGAP35Q9NRY4 1499 aa11.46□□□□□ -0.57
CXCR4-202ENST00000409817 STAG3Q9UJ98 1225 aa11.46□□□□□ -0.58
CXCR4-202ENST00000409817 GAPVD1Q14C86 1478 aa11.45□□□□□ -0.58
CXCR4-202ENST00000409817 TARBP1Q13395 1621 aaKnown RBP11.45□□□□□ -0.58
CXCR4-202ENST00000409817 SPOCK2Q92563 424 aa11.44□□□□□ -0.58
CXCR4-202ENST00000409817 EFCAB5A4FU69 1503 aa11.42□□□□□ -0.58
CXCR4-202ENST00000409817 WDR62O43379 1518 aa11.42□□□□□ -0.58
CXCR4-202ENST00000409817 KLHL34Q8N239 644 aa11.42□□□□□ -0.58
CXCR4-202ENST00000409817 MAP3K1Q13233 1512 aa11.4□□□□□ -0.58
CXCR4-202ENST00000409817 RANGAP1P46060 587 aaPredicted RBP11.4□□□□□ -0.58
CXCR4-202ENST00000409817 CTTNBP2Q8WZ74 1663 aa11.4□□□□□ -0.58
CXCR4-202ENST00000409817 FHAD1B1AJZ9 1412 aa11.4□□□□□ -0.58
CXCR4-202ENST00000409817 TDRD9Q8NDG6 1382 aaKnown RBP11.4□□□□□ -0.58
CXCR4-202ENST00000409817 IFT140Q96RY7 1462 aa11.39□□□□□ -0.59
CXCR4-202ENST00000409817 PLCD3Q8N3E9 789 aa11.37□□□□□ -0.59
CXCR4-202ENST00000409817 PBRM1Q86U86 1689 aa11.36□□□□□ -0.59
CXCR4-202ENST00000409817 AQRO60306 1485 aaKnown RBP eCLIP11.34□□□□□ -0.59
CXCR4-202ENST00000409817 GRIN2BQ13224 1484 aa11.34□□□□□ -0.59
CXCR4-202ENST00000409817 TTBK1Q5TCY1 1321 aaPredicted RBP11.34□□□□□ -0.59
CXCR4-202ENST00000409817 ERCC6Q03468 1493 aa11.34□□□□□ -0.59
CXCR4-202ENST00000409817 MIER1Q8N108 512 aa11.34□□□□□ -0.59
CXCR4-202ENST00000409817 ECM2O94769 699 aaPredicted RBP11.32□□□□□ -0.6
CXCR4-202ENST00000409817 ADAMTS12P58397 1594 aa11.32□□□□□ -0.6
CXCR4-202ENST00000409817 TIAM1Q13009 1591 aa11.32□□□□□ -0.6
CXCR4-202ENST00000409817 FMN1Q68DA7 1419 aa11.32□□□□□ -0.6
CXCR4-202ENST00000409817 THOC2Q8NI27 1593 aaKnown RBP11.31□□□□□ -0.6
CXCR4-202ENST00000409817 FYCO1Q9BQS8 1478 aa11.31□□□□□ -0.6
CXCR4-202ENST00000409817 SAMD9Q5K651 1589 aa11.31□□□□□ -0.6
CXCR4-202ENST00000409817 NPM1P06748 294 aaKnown RBP eCLIP11.29□□□□□ -0.6
CXCR4-202ENST00000409817 CASKIN1Q8WXD9 1431 aa11.29□□□□□ -0.6
CXCR4-202ENST00000409817 RRBP1Q9P2E9 1410 aaKnown RBP11.29□□□□□ -0.6
CXCR4-202ENST00000409817 CCER1Q8TC90 406 aaPredicted RBP11.29□□□□□ -0.6
CXCR4-202ENST00000409817 CFAP43Q8NDM7 1665 aa11.28□□□□□ -0.6
CXCR4-202ENST00000409817 KANK4Q5T7N3 995 aaPredicted RBP11.28□□□□□ -0.6
CXCR4-202ENST00000409817 RGL2O15211 777 aa11.27□□□□□ -0.6
CXCR4-202ENST00000409817 PCF11O94913 1555 aaKnown RBP11.27□□□□□ -0.6
CXCR4-202ENST00000409817 FHOD3Q2V2M9 1422 aa11.27□□□□□ -0.61
CXCR4-202ENST00000409817 HAP1P54257 671 aaPredicted RBP11.27□□□□□ -0.61
CXCR4-202ENST00000409817 LRRC9Q6ZRR7 1453 aa11.26□□□□□ -0.61
CXCR4-202ENST00000409817 EIF4G3O43432 1585 aaKnown RBP11.25□□□□□ -0.61
CXCR4-202ENST00000409817 IQGAP2Q13576 1575 aa11.25□□□□□ -0.61
CXCR4-202ENST00000409817 ZNF608Q9ULD9 1512 aaPredicted RBP11.25□□□□□ -0.61
CXCR4-202ENST00000409817 MAGI1Q96QZ7 1491 aaPredicted RBP11.24□□□□□ -0.61
CXCR4-202ENST00000409817 CCNB3Q8WWL7 1395 aa11.23□□□□□ -0.61
CXCR4-202ENST00000409817 SNAPC4Q5SXM2 1469 aa11.23□□□□□ -0.61
CXCR4-202ENST00000409817 UGGT2Q9NYU1 1516 aa11.22□□□□□ -0.61
CXCR4-202ENST00000409817 P3H3Q8IVL6 736 aa11.21□□□□□ -0.62
CXCR4-202ENST00000409817 KIAA0586Q9BVV6 1533 aa11.21□□□□□ -0.62
CXCR4-202ENST00000409817 BBXQ8WY36 941 aaPredicted RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms