RNA–Protein interactions for RNA: ENST00000409817.1

CXCR4-202, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS P3 BASIC

Gene CXCR4, Length 1,895 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-202ENST00000409817 AEBP2Q6ZN18 517 aaPredicted RBP19.95■□□□□ 0.78
CXCR4-202ENST00000409817 CHIC1Q5VXU3 224 aa19.92■□□□□ 0.78
CXCR4-202ENST00000409817 PHF23Q9BUL5 403 aaPredicted RBP17.66■□□□□ 0.42
CXCR4-202ENST00000409817 SENP3Q9H4L4 574 aaPredicted RBP16.69■□□□□ 0.26
CXCR4-202ENST00000409817 NISCHQ9Y2I1 1504 aa16.42■□□□□ 0.22
CXCR4-202ENST00000409817 PLPPR3Q6T4P5 718 aa16.36■□□□□ 0.21
CXCR4-202ENST00000409817 FOXD1Q16676 465 aa15.51■□□□□ 0.07
CXCR4-202ENST00000409817 ADRA2BP18089 450 aa15.44■□□□□ 0.06
CXCR4-202ENST00000409817 PPP6R1Q9UPN7 881 aa15.42■□□□□ 0.06
CXCR4-202ENST00000409817 KCNA4P22459 653 aa14.86□□□□□ -0.03
CXCR4-202ENST00000409817 PIAS4Q8N2W9 510 aaPredicted RBP14.7□□□□□ -0.06
CXCR4-202ENST00000409817 PPP4R3CPQ6ZMV5 832 aa14.51□□□□□ -0.09
CXCR4-202ENST00000409817 EHMT2Q96KQ7 1210 aa14.42□□□□□ -0.1
CXCR4-202ENST00000409817 CCDC180Q9P1Z9 1646 aa14.27□□□□□ -0.13
CXCR4-202ENST00000409817 NCBP3Q53F19 620 aaKnown RBP14.19□□□□□ -0.14
CXCR4-202ENST00000409817 SLC4A1APQ9BWU0 796 aaKnown RBP14.16□□□□□ -0.14
CXCR4-202ENST00000409817 NPM3O75607 178 aaKnown RBP14.12□□□□□ -0.15
CXCR4-202ENST00000409817 CSRNP3Q8WYN3 585 aa14.06□□□□□ -0.16
CXCR4-202ENST00000409817 MSH5O43196 834 aa13.97□□□□□ -0.17
CXCR4-202ENST00000409817 CNKSR2Q8WXI2 1034 aa13.96□□□□□ -0.17
CXCR4-202ENST00000409817 SCAF1Q9H7N4 1312 aaKnown RBP13.9□□□□□ -0.18
CXCR4-202ENST00000409817 ZCCHC6Q5VYS8 1495 aaKnown RBP13.85□□□□□ -0.19
CXCR4-202ENST00000409817 MAPK8IP2Q13387 824 aaPredicted RBP13.82□□□□□ -0.2
CXCR4-202ENST00000409817 POTEDQ86YR6 584 aa13.76□□□□□ -0.21
CXCR4-202ENST00000409817 ZBTB22O15209 634 aa13.75□□□□□ -0.21
CXCR4-202ENST00000409817 DCAF1Q9Y4B6 1507 aa13.65□□□□□ -0.22
CXCR4-202ENST00000409817 DNAJC5BQ9UF47 199 aa13.63□□□□□ -0.23
CXCR4-202ENST00000409817 RNF216Q9NWF9 866 aaPredicted RBP13.57□□□□□ -0.24
CXCR4-202ENST00000409817 DMRT2Q9Y5R5 561 aa13.45□□□□□ -0.26
CXCR4-202ENST00000409817 FOXD4L1Q9NU39 408 aa13.44□□□□□ -0.26
CXCR4-202ENST00000409817 SHROOM4Q9ULL8 1493 aa13.43□□□□□ -0.26
CXCR4-202ENST00000409817 MYO15BQ96JP2 1530 aa13.43□□□□□ -0.26
CXCR4-202ENST00000409817 DCAF8L2P0C7V8 631 aa13.41□□□□□ -0.26
CXCR4-202ENST00000409817 HOXD11P31277 338 aaPredicted RBP13.4□□□□□ -0.26
CXCR4-202ENST00000409817 SLC4A2P04920 1241 aa13.25□□□□□ -0.29
CXCR4-202ENST00000409817 NACADO15069 1562 aa13.24□□□□□ -0.29
CXCR4-202ENST00000409817 ABCC9O60706 1549 aa13.21□□□□□ -0.3
CXCR4-202ENST00000409817 RB1CC1Q8TDY2 1594 aa13.06□□□□□ -0.32
CXCR4-202ENST00000409817 SCRIBQ14160 1630 aa13.06□□□□□ -0.32
CXCR4-202ENST00000409817 SUPT5HO00267 1087 aaKnown RBP13.06□□□□□ -0.32
CXCR4-202ENST00000409817 MYCNP04198 464 aaPredicted RBP12.96□□□□□ -0.33
CXCR4-202ENST00000409817 ATXN8OSP0DMR3 200 aa12.9□□□□□ -0.34
CXCR4-202ENST00000409817 RSF1Q96T23 1441 aaPredicted RBP12.81□□□□□ -0.36
CXCR4-202ENST00000409817 DCAF8L1A6NGE4 600 aa12.76□□□□□ -0.37
CXCR4-202ENST00000409817 UNC13AQ9UPW8 1703 aa12.74□□□□□ -0.37
CXCR4-202ENST00000409817 ATF5Q9Y2D1 282 aaPredicted RBP12.71□□□□□ -0.37
CXCR4-202ENST00000409817 BAZ1AQ9NRL2 1556 aaPredicted RBP12.69□□□□□ -0.38
CXCR4-202ENST00000409817 CECR2Q9BXF3 1484 aa12.69□□□□□ -0.38
CXCR4-202ENST00000409817 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.68□□□□□ -0.38
CXCR4-202ENST00000409817 MROH2BQ7Z745 1585 aa12.66□□□□□ -0.38
CXCR4-202ENST00000409817 U3KPZ7 1027 aaPredicted RBP12.65□□□□□ -0.38
CXCR4-202ENST00000409817 BICRAQ9NZM4 1560 aa12.61□□□□□ -0.39
CXCR4-202ENST00000409817 FKBP8Q14318 412 aa12.61□□□□□ -0.39
CXCR4-202ENST00000409817 SMARCA4P51532 1647 aa12.58□□□□□ -0.4
CXCR4-202ENST00000409817 WIZO95785 1651 aa12.56□□□□□ -0.4
CXCR4-202ENST00000409817 SAMD1Q6SPF0 538 aaPredicted RBP12.53□□□□□ -0.4
CXCR4-202ENST00000409817 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.52□□□□□ -0.41
CXCR4-202ENST00000409817 HNRNPUL2Q1KMD3 747 aaKnown RBP12.52□□□□□ -0.41
CXCR4-202ENST00000409817 RTN4Q9NQC3 1192 aaKnown RBP12.5□□□□□ -0.41
CXCR4-202ENST00000409817 TOP2AP11388 1531 aaKnown RBP12.48□□□□□ -0.41
CXCR4-202ENST00000409817 PABPN1Q86U42 306 aaKnown RBP eCLIP12.47□□□□□ -0.41
CXCR4-202ENST00000409817 PEG3Q9GZU2 1588 aa12.46□□□□□ -0.42
CXCR4-202ENST00000409817 AMER1Q5JTC6 1135 aaPredicted RBP12.4□□□□□ -0.42
CXCR4-202ENST00000409817 SMARCA2P51531 1590 aa12.36□□□□□ -0.43
CXCR4-202ENST00000409817 EIF4G1Q04637 1599 aaKnown RBP12.34□□□□□ -0.43
CXCR4-202ENST00000409817 ZNF219Q9P2Y4 722 aaPredicted RBP12.34□□□□□ -0.43
CXCR4-202ENST00000409817 CCDC88BA6NC98 1476 aa12.33□□□□□ -0.44
CXCR4-202ENST00000409817 ATAD2BQ9ULI0 1458 aa12.32□□□□□ -0.44
CXCR4-202ENST00000409817 TRIM41Q8WV44 630 aa12.31□□□□□ -0.44
CXCR4-202ENST00000409817 BAZ1BQ9UIG0 1483 aaKnown RBP12.27□□□□□ -0.45
CXCR4-202ENST00000409817 HMGXB3Q12766 1538 aa12.22□□□□□ -0.45
CXCR4-202ENST00000409817 NCAPD3P42695 1498 aa12.21□□□□□ -0.46
CXCR4-202ENST00000409817 APLP2Q06481 763 aa12.21□□□□□ -0.46
CXCR4-202ENST00000409817 MKRN4PQ13434 485 aaPredicted RBP12.17□□□□□ -0.46
CXCR4-202ENST00000409817 SPINK5Q9NQ38 1064 aaPredicted RBP12.14□□□□□ -0.47
CXCR4-202ENST00000409817 RNF39Q9H2S5 420 aa12.12□□□□□ -0.47
CXCR4-202ENST00000409817 LOC105371045A0A1W2PR82 267 aa12.1□□□□□ -0.47
CXCR4-202ENST00000409817 SLC24A1O60721 1099 aa12.1□□□□□ -0.47
CXCR4-202ENST00000409817 ABCC8Q09428 1581 aa12.1□□□□□ -0.47
CXCR4-202ENST00000409817 WRNQ14191 1432 aaPredicted RBP eCLIP12.07□□□□□ -0.48
CXCR4-202ENST00000409817 EEA1Q15075 1411 aa12.07□□□□□ -0.48
CXCR4-202ENST00000409817 SPDYE4A6NLX3 237 aa12.06□□□□□ -0.48
CXCR4-202ENST00000409817 TRHP20396 242 aaPredicted RBP12.06□□□□□ -0.48
CXCR4-202ENST00000409817 PROM2Q8N271 834 aa12.03□□□□□ -0.48
CXCR4-202ENST00000409817 POLA2Q14181 598 aa12.02□□□□□ -0.49
CXCR4-202ENST00000409817 FAM9AQ8IZU1 332 aaPredicted RBP12.02□□□□□ -0.49
CXCR4-202ENST00000409817 CC2D2AQ9P2K1 1620 aa11.99□□□□□ -0.49
CXCR4-202ENST00000409817 CFTRP13569 1480 aa11.99□□□□□ -0.49
CXCR4-202ENST00000409817 SYNJ1O43426 1573 aa11.97□□□□□ -0.49
CXCR4-202ENST00000409817 CAPN15O75808 1086 aa11.96□□□□□ -0.49
CXCR4-202ENST00000409817 FBLN2P98095 1184 aa11.95□□□□□ -0.5
CXCR4-202ENST00000409817 TOP2BQ02880 1626 aa11.95□□□□□ -0.5
CXCR4-202ENST00000409817 PRDM2Q13029 1718 aa11.94□□□□□ -0.5
CXCR4-202ENST00000409817 C1QBPQ07021 282 aaKnown RBP11.93□□□□□ -0.5
CXCR4-202ENST00000409817 BIVM-ERCC5R4GMW8 1640 aa11.93□□□□□ -0.5
CXCR4-202ENST00000409817 SOGA1O94964 1423 aa11.93□□□□□ -0.5
CXCR4-202ENST00000409817 FBXO3Q9UK99 471 aa11.92□□□□□ -0.5
CXCR4-202ENST00000409817 CADPSQ9ULU8 1353 aa11.9□□□□□ -0.5
CXCR4-202ENST00000409817 TNIKQ9UKE5 1360 aa11.87□□□□□ -0.51
CXCR4-202ENST00000409817 GOLGA3Q08378 1498 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms