RNA–Protein interactions for RNA: ENST00000399256.4

APOB-202, Transcript of apolipoprotein B, humanhuman

TSL 1 (best) BASIC

Gene APOB, Length 3,128 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOB-202ENST00000399256 FGD5Q6ZNL6 1462 aa20.1■□□□□ 0.81
APOB-202ENST00000399256 PRXQ9BXM0 1461 aa20.09■□□□□ 0.81
APOB-202ENST00000399256 ERICH3Q5RHP9 1530 aa20.09■□□□□ 0.81
APOB-202ENST00000399256 CCNB3Q8WWL7 1395 aa20.06■□□□□ 0.8
APOB-202ENST00000399256 CUX2O14529 1486 aa20.05■□□□□ 0.8
APOB-202ENST00000399256 POLA1P09884 1462 aaPredicted RBP20.02■□□□□ 0.8
APOB-202ENST00000399256 MRC2Q9UBG0 1479 aa20■□□□□ 0.79
APOB-202ENST00000399256 FKBP8Q14318 412 aa20■□□□□ 0.79
APOB-202ENST00000399256 RAB3GAP2Q9H2M9 1393 aa19.99■□□□□ 0.79
APOB-202ENST00000399256 MAPKBP1O60336 1514 aa19.97■□□□□ 0.79
APOB-202ENST00000399256 DDX10Q13206 875 aaKnown RBP19.96■□□□□ 0.79
APOB-202ENST00000399256 ERCC6Q03468 1493 aa19.96■□□□□ 0.79
APOB-202ENST00000399256 KIF27Q86VH2 1401 aa19.95■□□□□ 0.78
APOB-202ENST00000399256 RAD54L2Q9Y4B4 1467 aa19.95■□□□□ 0.78
APOB-202ENST00000399256 ARHGAP35Q9NRY4 1499 aa19.93■□□□□ 0.78
APOB-202ENST00000399256 WDR62O43379 1518 aa19.92■□□□□ 0.78
APOB-202ENST00000399256 ABCA10Q8WWZ4 1543 aa19.92■□□□□ 0.78
APOB-202ENST00000399256 WDR97A6NE52 1622 aa19.9■□□□□ 0.78
APOB-202ENST00000399256 THOC2Q8NI27 1593 aaKnown RBP19.9■□□□□ 0.78
APOB-202ENST00000399256 SIN3AQ96ST3 1273 aa19.89■□□□□ 0.77
APOB-202ENST00000399256 HIRIP3Q9BW71 556 aaPredicted RBP19.85■□□□□ 0.77
APOB-202ENST00000399256 TARBP1Q13395 1621 aaKnown RBP19.84■□□□□ 0.77
APOB-202ENST00000399256 SETD5Q9C0A6 1442 aa19.84■□□□□ 0.77
APOB-202ENST00000399256 NEFLP07196 543 aa19.84■□□□□ 0.77
APOB-202ENST00000399256 TRIM52Q96A61 297 aa19.82■□□□□ 0.76
APOB-202ENST00000399256 BCL11AQ9H165 835 aa19.82■□□□□ 0.76
APOB-202ENST00000399256 PPP1R15AO75807 674 aaPredicted RBP19.81■□□□□ 0.76
APOB-202ENST00000399256 RBM19Q9Y4C8 960 aaKnown RBP19.81■□□□□ 0.76
APOB-202ENST00000399256 FAM50AQ14320 339 aaKnown RBP19.8■□□□□ 0.76
APOB-202ENST00000399256 IGF1RP08069 1367 aa19.8■□□□□ 0.76
APOB-202ENST00000399256 TIAM1Q13009 1591 aa19.79■□□□□ 0.76
APOB-202ENST00000399256 ABCA5Q8WWZ7 1642 aa19.79■□□□□ 0.76
APOB-202ENST00000399256 PHLDB1Q86UU1 1377 aa19.76■□□□□ 0.75
APOB-202ENST00000399256 TDRD9Q8NDG6 1382 aaKnown RBP19.74■□□□□ 0.75
APOB-202ENST00000399256 IFT140Q96RY7 1462 aa19.74■□□□□ 0.75
APOB-202ENST00000399256 ANP32CO43423 234 aa19.74■□□□□ 0.75
APOB-202ENST00000399256 LRRC9Q6ZRR7 1453 aa19.72■□□□□ 0.75
APOB-202ENST00000399256 GAPVD1Q14C86 1478 aa19.71■□□□□ 0.75
APOB-202ENST00000399256 CCER2I3L3R5 266 aa19.71■□□□□ 0.75
APOB-202ENST00000399256 CARMIL1Q5VZK9 1371 aa19.69■□□□□ 0.74
APOB-202ENST00000399256 MAP3K1Q13233 1512 aa19.69■□□□□ 0.74
APOB-202ENST00000399256 CUL7Q14999 1698 aa19.67■□□□□ 0.74
APOB-202ENST00000399256 ATP1B4Q9UN42 357 aaPredicted RBP19.67■□□□□ 0.74
APOB-202ENST00000399256 ZNF608Q9ULD9 1512 aaPredicted RBP19.66■□□□□ 0.74
APOB-202ENST00000399256 PBRM1Q86U86 1689 aa19.65■□□□□ 0.74
APOB-202ENST00000399256 P3H3Q8IVL6 736 aa19.65■□□□□ 0.74
APOB-202ENST00000399256 TIMELESSQ9UNS1 1208 aa19.65■□□□□ 0.74
APOB-202ENST00000399256 AQRO60306 1485 aaKnown RBP eCLIP19.64■□□□□ 0.746e-12■■■■■ 43.8
APOB-202ENST00000399256 MSH5O43196 834 aa19.6■□□□□ 0.73
APOB-202ENST00000399256 EIF4G3O43432 1585 aaKnown RBP19.6■□□□□ 0.73
APOB-202ENST00000399256 PCF11O94913 1555 aaKnown RBP19.58■□□□□ 0.72
APOB-202ENST00000399256 GRIN2BQ13224 1484 aa19.57■□□□□ 0.72
APOB-202ENST00000399256 IRX6P78412 446 aaPredicted RBP19.57■□□□□ 0.72
APOB-202ENST00000399256 TONSLQ96HA7 1378 aa19.56■□□□□ 0.72
APOB-202ENST00000399256 CFAP43Q8NDM7 1665 aa19.56■□□□□ 0.72
APOB-202ENST00000399256 FHAD1B1AJZ9 1412 aa19.56■□□□□ 0.72
APOB-202ENST00000399256 ADAMTS12P58397 1594 aa19.53■□□□□ 0.72
APOB-202ENST00000399256 HNRNPUQ00839 825 aaKnown RBP eCLIP19.53■□□□□ 0.72
APOB-202ENST00000399256 FHOD3Q2V2M9 1422 aa19.49■□□□□ 0.71
APOB-202ENST00000399256 CDK11AQ9UQ88 783 aaPredicted RBP19.48■□□□□ 0.71
APOB-202ENST00000399256 SNAPC4Q5SXM2 1469 aa19.47■□□□□ 0.71
APOB-202ENST00000399256 CTTNBP2Q8WZ74 1663 aa19.46■□□□□ 0.71
APOB-202ENST00000399256 CCDC18Q5T9S5 1454 aa19.45■□□□□ 0.7
APOB-202ENST00000399256 FANCIQ9NVI1 1328 aa19.44■□□□□ 0.7
APOB-202ENST00000399256 ERICH6Q7L0X2 663 aa19.44■□□□□ 0.7
APOB-202ENST00000399256 MAGI1Q96QZ7 1491 aaPredicted RBP19.42■□□□□ 0.7
APOB-202ENST00000399256 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.42■□□□□ 0.7
APOB-202ENST00000399256 FYCO1Q9BQS8 1478 aa19.41■□□□□ 0.7
APOB-202ENST00000399256 FGD6Q6ZV73 1430 aa19.41■□□□□ 0.7
APOB-202ENST00000399256 UACAQ9BZF9 1416 aa19.39■□□□□ 0.69
APOB-202ENST00000399256 PTPRKQ15262 1439 aa19.39■□□□□ 0.69
APOB-202ENST00000399256 CASKIN1Q8WXD9 1431 aa19.38■□□□□ 0.69
APOB-202ENST00000399256 HFM1A2PYH4 1435 aa19.36■□□□□ 0.69
APOB-202ENST00000399256 PTPN23Q9H3S7 1636 aa19.35■□□□□ 0.69
APOB-202ENST00000399256 SYNJ2O15056 1496 aa19.35■□□□□ 0.69
APOB-202ENST00000399256 GRIN2AQ12879 1464 aa19.35■□□□□ 0.69
APOB-202ENST00000399256 WASHC2AQ641Q2 1341 aa19.35■□□□□ 0.69
APOB-202ENST00000399256 HSPA5P11021 654 aaKnown RBP19.34■□□□□ 0.69
APOB-202ENST00000399256 KDM5BQ9UGL1 1544 aa19.33■□□□□ 0.68
APOB-202ENST00000399256 MTUS2Q5JR59 1369 aa19.32■□□□□ 0.68
APOB-202ENST00000399256 CCDC184Q52MB2 194 aa19.32■□□□□ 0.68
APOB-202ENST00000399256 PPP4R2Q9NY27 417 aa19.31■□□□□ 0.68
APOB-202ENST00000399256 NAIPQ13075 1403 aa19.3■□□□□ 0.68
APOB-202ENST00000399256 EFCAB5A4FU69 1503 aa19.3■□□□□ 0.68
APOB-202ENST00000399256 IQGAP2Q13576 1575 aa19.28■□□□□ 0.68
APOB-202ENST00000399256 CHMP7Q8WUX9 453 aaPredicted RBP19.27■□□□□ 0.68
APOB-202ENST00000399256 B4GALNT3Q6L9W6 998 aa19.27■□□□□ 0.67
APOB-202ENST00000399256 FAM9BQ8IZU0 186 aa19.26■□□□□ 0.67
APOB-202ENST00000399256 ERICH6BQ5W0A0 696 aa19.25■□□□□ 0.67
APOB-202ENST00000399256 SAMD9Q5K651 1589 aa19.25■□□□□ 0.67
APOB-202ENST00000399256 FMN1Q68DA7 1419 aa19.25■□□□□ 0.67
APOB-202ENST00000399256 CEP170Q5SW79 1584 aa19.25■□□□□ 0.67
APOB-202ENST00000399256 RRP7BPQ9NSQ0 103 aa19.24■□□□□ 0.67
APOB-202ENST00000399256 EIF4G2P78344 907 aaKnown RBP eCLIP19.23■□□□□ 0.67
APOB-202ENST00000399256 KIAA0586Q9BVV6 1533 aa19.23■□□□□ 0.67
APOB-202ENST00000399256 NCOA2Q15596 1464 aa19.22■□□□□ 0.67
APOB-202ENST00000399256 CNTLNQ9NXG0 1405 aa19.22■□□□□ 0.67
APOB-202ENST00000399256 FBLN2P98095 1184 aa19.22■□□□□ 0.67
APOB-202ENST00000399256 CHIC2Q9UKJ5 165 aa19.22■□□□□ 0.67
APOB-202ENST00000399256 NUP160Q12769 1436 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms