RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 TIMELESSQ9UNS1 1208 aa14.43□□□□□ -0.1
COL17A1-203ENST00000393211 MAPKBP1O60336 1514 aa14.43□□□□□ -0.1
COL17A1-203ENST00000393211 FGD5Q6ZNL6 1462 aa14.41□□□□□ -0.1
COL17A1-203ENST00000393211 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.41□□□□□ -0.1
COL17A1-203ENST00000393211 EFCAB5A4FU69 1503 aa14.39□□□□□ -0.11
COL17A1-203ENST00000393211 AQRO60306 1485 aaKnown RBP eCLIP14.39□□□□□ -0.11
COL17A1-203ENST00000393211 DNAJC5BQ9UF47 199 aa14.37□□□□□ -0.11
COL17A1-203ENST00000393211 FYCO1Q9BQS8 1478 aa14.36□□□□□ -0.11
COL17A1-203ENST00000393211 CC2D2AQ9P2K1 1620 aa14.35□□□□□ -0.11
COL17A1-203ENST00000393211 PCF11O94913 1555 aaKnown RBP14.34□□□□□ -0.11
COL17A1-203ENST00000393211 PHLDB1Q86UU1 1377 aa14.34□□□□□ -0.11
COL17A1-203ENST00000393211 SUPT16HQ9Y5B9 1047 aaKnown RBP14.33□□□□□ -0.11
COL17A1-203ENST00000393211 CUL7Q14999 1698 aa14.33□□□□□ -0.11
COL17A1-203ENST00000393211 DNMBPQ6XZF7 1577 aa14.33□□□□□ -0.12
COL17A1-203ENST00000393211 ABCA10Q8WWZ4 1543 aa14.33□□□□□ -0.12
COL17A1-203ENST00000393211 CASKIN1Q8WXD9 1431 aa14.32□□□□□ -0.12
COL17A1-203ENST00000393211 ITGAEP38570 1179 aa14.3□□□□□ -0.12
COL17A1-203ENST00000393211 FANCD2Q9BXW9 1451 aa14.29□□□□□ -0.12
COL17A1-203ENST00000393211 CTTNBP2Q8WZ74 1663 aa14.29□□□□□ -0.12
COL17A1-203ENST00000393211 WDR97A6NE52 1622 aa14.27□□□□□ -0.13
COL17A1-203ENST00000393211 FMN1Q68DA7 1419 aa14.26□□□□□ -0.13
COL17A1-203ENST00000393211 FAM50AQ14320 339 aaKnown RBP14.24□□□□□ -0.13
COL17A1-203ENST00000393211 TOPBP1Q92547 1522 aa14.24□□□□□ -0.13
COL17A1-203ENST00000393211 POLA1P09884 1462 aaPredicted RBP14.22□□□□□ -0.13
COL17A1-203ENST00000393211 CCER2I3L3R5 266 aa14.22□□□□□ -0.13
COL17A1-203ENST00000393211 FHOD3Q2V2M9 1422 aa14.22□□□□□ -0.13
COL17A1-203ENST00000393211 THOC2Q8NI27 1593 aaKnown RBP14.22□□□□□ -0.13
COL17A1-203ENST00000393211 PPP1R15AO75807 674 aaPredicted RBP14.21□□□□□ -0.13
COL17A1-203ENST00000393211 FGD6Q6ZV73 1430 aa14.21□□□□□ -0.13
COL17A1-203ENST00000393211 SNAPC4Q5SXM2 1469 aa14.19□□□□□ -0.14
COL17A1-203ENST00000393211 SAMD9Q5K651 1589 aa14.18□□□□□ -0.14
COL17A1-203ENST00000393211 SIN3AQ96ST3 1273 aa14.18□□□□□ -0.14
COL17A1-203ENST00000393211 RAD54L2Q9Y4B4 1467 aa14.17□□□□□ -0.14
COL17A1-203ENST00000393211 HFM1A2PYH4 1435 aa14.17□□□□□ -0.14
COL17A1-203ENST00000393211 UACAQ9BZF9 1416 aa14.17□□□□□ -0.14
COL17A1-203ENST00000393211 KIF21AQ7Z4S6 1674 aa14.16□□□□□ -0.14
COL17A1-203ENST00000393211 CCDC18Q5T9S5 1454 aa14.15□□□□□ -0.14
COL17A1-203ENST00000393211 DDX10Q13206 875 aaKnown RBP14.15□□□□□ -0.14
COL17A1-203ENST00000393211 PTPN23Q9H3S7 1636 aa14.14□□□□□ -0.15
COL17A1-203ENST00000393211 LAMC3Q9Y6N6 1575 aa14.14□□□□□ -0.15
COL17A1-203ENST00000393211 ABCA5Q8WWZ7 1642 aa14.13□□□□□ -0.15
COL17A1-203ENST00000393211 P3H3Q8IVL6 736 aa14.13□□□□□ -0.15
COL17A1-203ENST00000393211 TSHZ2Q9NRE2 1034 aa14.13□□□□□ -0.15
COL17A1-203ENST00000393211 EHBP1L1Q8N3D4 1523 aa14.12□□□□□ -0.15
COL17A1-203ENST00000393211 MTUS2Q5JR59 1369 aa14.12□□□□□ -0.15
COL17A1-203ENST00000393211 TONSLQ96HA7 1378 aa14.12□□□□□ -0.15
COL17A1-203ENST00000393211 SUPT6HQ7KZ85 1726 aaKnown RBP14.12□□□□□ -0.15
COL17A1-203ENST00000393211 MYOM3Q5VTT5 1437 aa14.12□□□□□ -0.15
COL17A1-203ENST00000393211 ANP32CO43423 234 aa14.12□□□□□ -0.15
COL17A1-203ENST00000393211 GRIN2BQ13224 1484 aa14.11□□□□□ -0.15
COL17A1-203ENST00000393211 KCNH8Q96L42 1107 aa14.11□□□□□ -0.15
COL17A1-203ENST00000393211 ATP1B4Q9UN42 357 aaPredicted RBP14.11□□□□□ -0.15
COL17A1-203ENST00000393211 NCOA2Q15596 1464 aa14.09□□□□□ -0.15
COL17A1-203ENST00000393211 ARHGEF11O15085 1522 aa14.08□□□□□ -0.15
COL17A1-203ENST00000393211 NAIPQ13075 1403 aa14.08□□□□□ -0.16
COL17A1-203ENST00000393211 LRRIQ1Q96JM4 1722 aa14.08□□□□□ -0.16
COL17A1-203ENST00000393211 AKNAQ7Z591 1439 aa14.07□□□□□ -0.16
COL17A1-203ENST00000393211 URB2Q14146 1524 aaKnown RBP14.06□□□□□ -0.16
COL17A1-203ENST00000393211 UGGT2Q9NYU1 1516 aa14.06□□□□□ -0.16
COL17A1-203ENST00000393211 PTPRKQ15262 1439 aa14.06□□□□□ -0.16
COL17A1-203ENST00000393211 NEFLP07196 543 aa14.06□□□□□ -0.16
COL17A1-203ENST00000393211 TCOF1Q13428 1488 aaKnown RBP14.05□□□□□ -0.16
COL17A1-203ENST00000393211 GAPVD1Q14C86 1478 aa14.05□□□□□ -0.16
COL17A1-203ENST00000393211 GCC2Q8IWJ2 1684 aa14.05□□□□□ -0.16
COL17A1-203ENST00000393211 NESP48681 1621 aa14.03□□□□□ -0.16
COL17A1-203ENST00000393211 HECW1Q76N89 1606 aa14.03□□□□□ -0.16
COL17A1-203ENST00000393211 FKBP8Q14318 412 aa14.03□□□□□ -0.16
COL17A1-203ENST00000393211 KDM5BQ9UGL1 1544 aa14.03□□□□□ -0.16
COL17A1-203ENST00000393211 PDS5BQ9NTI5 1447 aa14.01□□□□□ -0.17
COL17A1-203ENST00000393211 MIA2Q96PC5 1412 aa13.99□□□□□ -0.17
COL17A1-203ENST00000393211 ANP32EQ9BTT0 268 aa13.97□□□□□ -0.17
COL17A1-203ENST00000393211 TDRD9Q8NDG6 1382 aaKnown RBP13.96□□□□□ -0.17
COL17A1-203ENST00000393211 TARBP1Q13395 1621 aaKnown RBP13.96□□□□□ -0.18
COL17A1-203ENST00000393211 MAGI3Q5TCQ9 1506 aa13.95□□□□□ -0.18
COL17A1-203ENST00000393211 ERICH6BQ5W0A0 696 aa13.93□□□□□ -0.18
COL17A1-203ENST00000393211 HIRIP3Q9BW71 556 aaPredicted RBP13.93□□□□□ -0.18
COL17A1-203ENST00000393211 IQGAP2Q13576 1575 aa13.92□□□□□ -0.18
COL17A1-203ENST00000393211 EPRSP07814 1512 aaKnown RBP13.92□□□□□ -0.18
COL17A1-203ENST00000393211 PBRM1Q86U86 1689 aa13.92□□□□□ -0.18
COL17A1-203ENST00000393211 TRIM52Q96A61 297 aa13.91□□□□□ -0.18
COL17A1-203ENST00000393211 DENND4BO75064 1496 aaPredicted RBP13.9□□□□□ -0.18
COL17A1-203ENST00000393211 ROCK1Q13464 1354 aa13.9□□□□□ -0.18
COL17A1-203ENST00000393211 BCANQ96GW7 911 aa13.9□□□□□ -0.18
COL17A1-203ENST00000393211 WDR62O43379 1518 aa13.89□□□□□ -0.19
COL17A1-203ENST00000393211 EIF4G2P78344 907 aaKnown RBP eCLIP13.89□□□□□ -0.19
COL17A1-203ENST00000393211 CNTLNQ9NXG0 1405 aa13.88□□□□□ -0.19
COL17A1-203ENST00000393211 ADAMTS12P58397 1594 aa13.88□□□□□ -0.19
COL17A1-203ENST00000393211 HSPA5P11021 654 aaKnown RBP13.87□□□□□ -0.19
COL17A1-203ENST00000393211 WASHC2AQ641Q2 1341 aa13.86□□□□□ -0.19
COL17A1-203ENST00000393211 RBM19Q9Y4C8 960 aaKnown RBP13.86□□□□□ -0.19
COL17A1-203ENST00000393211 NCOA1Q15788 1441 aa13.85□□□□□ -0.19
COL17A1-203ENST00000393211 POLR1AO95602 1720 aaPredicted RBP13.85□□□□□ -0.19
COL17A1-203ENST00000393211 MPHOSPH9Q99550 1183 aa13.85□□□□□ -0.19
COL17A1-203ENST00000393211 RRP7BPQ9NSQ0 103 aa13.85□□□□□ -0.19
COL17A1-203ENST00000393211 RPRD2Q5VT52 1461 aaKnown RBP13.84□□□□□ -0.19
COL17A1-203ENST00000393211 KDM6BO15054 1643 aa13.84□□□□□ -0.19
COL17A1-203ENST00000393211 DNMT1P26358 1616 aaKnown RBP13.84□□□□□ -0.19
COL17A1-203ENST00000393211 HNRNPUQ00839 825 aaKnown RBP eCLIP13.82□□□□□ -0.2
COL17A1-203ENST00000393211 ANKRD30BQ9BXX2 1392 aa13.82□□□□□ -0.2
COL17A1-203ENST00000393211 DAPK1P53355 1430 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms