RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 CUX2O14529 1486 aa20.99■□□□□ 0.95
VPS9D1-201ENST00000389386 POLA1P09884 1462 aaPredicted RBP20.99■□□□□ 0.95
VPS9D1-201ENST00000389386 MSH5O43196 834 aa20.97■□□□□ 0.95
VPS9D1-201ENST00000389386 ERCC6Q03468 1493 aa20.96■□□□□ 0.95
VPS9D1-201ENST00000389386 KCNH8Q96L42 1107 aa20.96■□□□□ 0.95
VPS9D1-201ENST00000389386 KIF27Q86VH2 1401 aa20.95■□□□□ 0.94
VPS9D1-201ENST00000389386 DHX57Q6P158 1386 aaKnown RBP20.93■□□□□ 0.94
VPS9D1-201ENST00000389386 PRXQ9BXM0 1461 aa20.91■□□□□ 0.94
VPS9D1-201ENST00000389386 VPS8Q8N3P4 1428 aa20.89■□□□□ 0.93
VPS9D1-201ENST00000389386 TDRD9Q8NDG6 1382 aaKnown RBP20.87■□□□□ 0.93
VPS9D1-201ENST00000389386 MRC2Q9UBG0 1479 aa20.87■□□□□ 0.93
VPS9D1-201ENST00000389386 IGF1RP08069 1367 aa20.83■□□□□ 0.93
VPS9D1-201ENST00000389386 NEFLP07196 543 aa20.82■□□□□ 0.92
VPS9D1-201ENST00000389386 FANCIQ9NVI1 1328 aa20.81■□□□□ 0.92
VPS9D1-201ENST00000389386 ERICH3Q5RHP9 1530 aa20.8■□□□□ 0.92
VPS9D1-201ENST00000389386 ABCA10Q8WWZ4 1543 aa20.8■□□□□ 0.92
VPS9D1-201ENST00000389386 ITGAEP38570 1179 aa20.79■□□□□ 0.92
VPS9D1-201ENST00000389386 ARAP1Q96P48 1450 aa20.76■□□□□ 0.91
VPS9D1-201ENST00000389386 CARMIL1Q5VZK9 1371 aa20.73■□□□□ 0.91
VPS9D1-201ENST00000389386 KANK4Q5T7N3 995 aaPredicted RBP20.73■□□□□ 0.91
VPS9D1-201ENST00000389386 MYT1LQ9UL68 1186 aa20.72■□□□□ 0.91
VPS9D1-201ENST00000389386 AQRO60306 1485 aaKnown RBP eCLIP20.72■□□□□ 0.91
VPS9D1-201ENST00000389386 WDR62O43379 1518 aa20.71■□□□□ 0.91
VPS9D1-201ENST00000389386 TARBP1Q13395 1621 aaKnown RBP20.69■□□□□ 0.9
VPS9D1-201ENST00000389386 THOC2Q8NI27 1593 aaKnown RBP20.69■□□□□ 0.9
VPS9D1-201ENST00000389386 GAPVD1Q14C86 1478 aa20.68■□□□□ 0.9
VPS9D1-201ENST00000389386 WDR97A6NE52 1622 aa20.68■□□□□ 0.9
VPS9D1-201ENST00000389386 ZNF608Q9ULD9 1512 aaPredicted RBP20.67■□□□□ 0.9
VPS9D1-201ENST00000389386 P3H3Q8IVL6 736 aa20.66■□□□□ 0.9
VPS9D1-201ENST00000389386 ARHGAP35Q9NRY4 1499 aa20.65■□□□□ 0.9
VPS9D1-201ENST00000389386 DEKP35659 375 aaKnown RBP20.63■□□□□ 0.89
VPS9D1-201ENST00000389386 ABCA5Q8WWZ7 1642 aa20.61■□□□□ 0.89
VPS9D1-201ENST00000389386 DDX10Q13206 875 aaKnown RBP20.59■□□□□ 0.89
VPS9D1-201ENST00000389386 IFT140Q96RY7 1462 aa20.58■□□□□ 0.89
VPS9D1-201ENST00000389386 TRIM52Q96A61 297 aa20.58■□□□□ 0.88
VPS9D1-201ENST00000389386 CDK11AQ9UQ88 783 aaPredicted RBP20.57■□□□□ 0.88
VPS9D1-201ENST00000389386 ATP1B4Q9UN42 357 aaPredicted RBP20.56■□□□□ 0.88
VPS9D1-201ENST00000389386 CCER2I3L3R5 266 aa20.55■□□□□ 0.88
VPS9D1-201ENST00000389386 PPP1R15AO75807 674 aaPredicted RBP20.54■□□□□ 0.88
VPS9D1-201ENST00000389386 ANO8Q9HCE9 1232 aaPredicted RBP20.52■□□□□ 0.88
VPS9D1-201ENST00000389386 PBRM1Q86U86 1689 aa20.49■□□□□ 0.87
VPS9D1-201ENST00000389386 RRBP1Q9P2E9 1410 aaKnown RBP20.49■□□□□ 0.87
VPS9D1-201ENST00000389386 CUL7Q14999 1698 aa20.49■□□□□ 0.87
VPS9D1-201ENST00000389386 FBLN2P98095 1184 aa20.48■□□□□ 0.87
VPS9D1-201ENST00000389386 EIF4G3O43432 1585 aaKnown RBP20.47■□□□□ 0.87
VPS9D1-201ENST00000389386 GRIN2BQ13224 1484 aa20.47■□□□□ 0.87
VPS9D1-201ENST00000389386 MAPKBP1O60336 1514 aa20.43■□□□□ 0.86
VPS9D1-201ENST00000389386 SNAPC4Q5SXM2 1469 aa20.42■□□□□ 0.86
VPS9D1-201ENST00000389386 ANP32CO43423 234 aa20.41■□□□□ 0.86
VPS9D1-201ENST00000389386 FHOD3Q2V2M9 1422 aa20.41■□□□□ 0.86
VPS9D1-201ENST00000389386 FHAD1B1AJZ9 1412 aa20.4■□□□□ 0.86
VPS9D1-201ENST00000389386 ERICH6BQ5W0A0 696 aa20.38■□□□□ 0.85
VPS9D1-201ENST00000389386 CHMP7Q8WUX9 453 aaPredicted RBP20.37■□□□□ 0.85
VPS9D1-201ENST00000389386 ADAMTS12P58397 1594 aa20.37■□□□□ 0.85
VPS9D1-201ENST00000389386 IRX6P78412 446 aaPredicted RBP20.36■□□□□ 0.85
VPS9D1-201ENST00000389386 CCNB3Q8WWL7 1395 aa20.35■□□□□ 0.85
VPS9D1-201ENST00000389386 RAB3GAP2Q9H2M9 1393 aa20.34■□□□□ 0.85
VPS9D1-201ENST00000389386 SALL2Q9Y467 1007 aaPredicted RBP20.32■□□□□ 0.84
VPS9D1-201ENST00000389386 CTTNBP2Q8WZ74 1663 aa20.31■□□□□ 0.84
VPS9D1-201ENST00000389386 TIAM1Q13009 1591 aa20.31■□□□□ 0.84
VPS9D1-201ENST00000389386 NOP58Q9Y2X3 529 aaKnown RBP20.31■□□□□ 0.84
VPS9D1-201ENST00000389386 PCF11O94913 1555 aaKnown RBP20.3■□□□□ 0.84
VPS9D1-201ENST00000389386 PPP4R2Q9NY27 417 aa20.3■□□□□ 0.84
VPS9D1-201ENST00000389386 FAM50AQ14320 339 aaKnown RBP20.28■□□□□ 0.84
VPS9D1-201ENST00000389386 NBR1Q14596 966 aa20.28■□□□□ 0.84
VPS9D1-201ENST00000389386 PHLDB1Q86UU1 1377 aa20.27■□□□□ 0.83
VPS9D1-201ENST00000389386 SIN3AQ96ST3 1273 aa20.26■□□□□ 0.83
VPS9D1-201ENST00000389386 HIRIP3Q9BW71 556 aaPredicted RBP20.26■□□□□ 0.83
VPS9D1-201ENST00000389386 LRRC9Q6ZRR7 1453 aa20.26■□□□□ 0.83
VPS9D1-201ENST00000389386 PAK3O75914 559 aaPredicted RBP20.25■□□□□ 0.83
VPS9D1-201ENST00000389386 GRIN2AQ12879 1464 aa20.25■□□□□ 0.83
VPS9D1-201ENST00000389386 TIMELESSQ9UNS1 1208 aa20.25■□□□□ 0.83
VPS9D1-201ENST00000389386 MAGI1Q96QZ7 1491 aaPredicted RBP20.24■□□□□ 0.83
VPS9D1-201ENST00000389386 HNRNPUQ00839 825 aaKnown RBP eCLIP20.24■□□□□ 0.83
VPS9D1-201ENST00000389386 SYNJ2O15056 1496 aa20.22■□□□□ 0.83
VPS9D1-201ENST00000389386 SETD5Q9C0A6 1442 aa20.19■□□□□ 0.82
VPS9D1-201ENST00000389386 UBE2Q2Q8WVN8 375 aa20.18■□□□□ 0.82
VPS9D1-201ENST00000389386 IQGAP2Q13576 1575 aa20.17■□□□□ 0.82
VPS9D1-201ENST00000389386 ARID3CA6NKF2 412 aa20.16■□□□□ 0.82
VPS9D1-201ENST00000389386 MAP3K1Q13233 1512 aa20.15■□□□□ 0.82
VPS9D1-201ENST00000389386 EFCAB5A4FU69 1503 aa20.15■□□□□ 0.82
VPS9D1-201ENST00000389386 CEP170Q5SW79 1584 aa20.14■□□□□ 0.81
VPS9D1-201ENST00000389386 B4GALNT3Q6L9W6 998 aa20.14■□□□□ 0.81
VPS9D1-201ENST00000389386 CASKIN1Q8WXD9 1431 aa20.14■□□□□ 0.81
VPS9D1-201ENST00000389386 IL27Q8NEV9 243 aa20.13■□□□□ 0.81
VPS9D1-201ENST00000389386 CCDC136Q96JN2 1154 aa20.12■□□□□ 0.81
VPS9D1-201ENST00000389386 FYCO1Q9BQS8 1478 aa20.12■□□□□ 0.81
VPS9D1-201ENST00000389386 CFAP43Q8NDM7 1665 aa20.12■□□□□ 0.81
VPS9D1-201ENST00000389386 KIAA0586Q9BVV6 1533 aa20.11■□□□□ 0.81
VPS9D1-201ENST00000389386 FMN1Q68DA7 1419 aa20.1■□□□□ 0.81
VPS9D1-201ENST00000389386 RTL5Q5HYW3 569 aaPredicted RBP20.09■□□□□ 0.81
VPS9D1-201ENST00000389386 SAMD9Q5K651 1589 aa20.08■□□□□ 0.81
VPS9D1-201ENST00000389386 JPH4Q96JJ6 628 aa20.08■□□□□ 0.8
VPS9D1-201ENST00000389386 MTUS2Q5JR59 1369 aa20.07■□□□□ 0.8
VPS9D1-201ENST00000389386 IPO9Q96P70 1041 aaKnown RBP20.06■□□□□ 0.8
VPS9D1-201ENST00000389386 CHD1O14646 1710 aa20.06■□□□□ 0.8
VPS9D1-201ENST00000389386 NUP160Q12769 1436 aa20.04■□□□□ 0.8
VPS9D1-201ENST00000389386 LRRIQ1Q96JM4 1722 aa20.02■□□□□ 0.8
VPS9D1-201ENST00000389386 DISP1Q96F81 1524 aa20.01■□□□□ 0.79
VPS9D1-201ENST00000389386 RTN4Q9NQC3 1192 aaKnown RBP20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms