RNA–Protein interactions for RNA: ENST00000381578.6

SHOX-203, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SHOX, Length 3,757 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-203ENST00000381578 RTN4Q9NQC3 1192 aaKnown RBP16.94■□□□□ 0.3
SHOX-203ENST00000381578 SIN3AQ96ST3 1273 aa16.93■□□□□ 0.3
SHOX-203ENST00000381578 FANCD2Q9BXW9 1451 aa16.93■□□□□ 0.3
SHOX-203ENST00000381578 SENP3-EIF4A1A0A087X0R7 540 aa16.92■□□□□ 0.3
SHOX-203ENST00000381578 TOP2BQ02880 1626 aa16.92■□□□□ 0.3
SHOX-203ENST00000381578 DEKP35659 375 aaKnown RBP16.92■□□□□ 0.3
SHOX-203ENST00000381578 NESP48681 1621 aa16.91■□□□□ 0.3
SHOX-203ENST00000381578 CUX1P39880 1505 aa16.91■□□□□ 0.3
SHOX-203ENST00000381578 CUX2O14529 1486 aa16.9■□□□□ 0.3
SHOX-203ENST00000381578 NPM2Q86SE8 214 aaKnown RBP16.88■□□□□ 0.29
SHOX-203ENST00000381578 RAPGEF2Q9Y4G8 1499 aa16.87■□□□□ 0.29
SHOX-203ENST00000381578 FAM9BQ8IZU0 186 aa16.86■□□□□ 0.29
SHOX-203ENST00000381578 PDS5BQ9NTI5 1447 aa16.84■□□□□ 0.29
SHOX-203ENST00000381578 B4GALNT3Q6L9W6 998 aa16.83■□□□□ 0.29
SHOX-203ENST00000381578 AEBP2Q6ZN18 517 aaPredicted RBP16.83■□□□□ 0.28
SHOX-203ENST00000381578 KANK4Q5T7N3 995 aaPredicted RBP16.83■□□□□ 0.28
SHOX-203ENST00000381578 EIF5BO60841 1220 aaKnown RBP16.82■□□□□ 0.28
SHOX-203ENST00000381578 P3H3Q8IVL6 736 aa16.82■□□□□ 0.28
SHOX-203ENST00000381578 FGD5Q6ZNL6 1462 aa16.81■□□□□ 0.28
SHOX-203ENST00000381578 MSH5O43196 834 aa16.8■□□□□ 0.28
SHOX-203ENST00000381578 DHX57Q6P158 1386 aaKnown RBP16.78■□□□□ 0.28
SHOX-203ENST00000381578 BIVM-ERCC5R4GMW8 1640 aa16.78■□□□□ 0.28
SHOX-203ENST00000381578 ANP32AP39687 249 aaKnown RBP16.77■□□□□ 0.28
SHOX-203ENST00000381578 CARMIL1Q5VZK9 1371 aa16.76■□□□□ 0.27
SHOX-203ENST00000381578 CCDC136Q96JN2 1154 aa16.76■□□□□ 0.27
SHOX-203ENST00000381578 PRKCSHP14314 528 aaPredicted RBP16.75■□□□□ 0.27
SHOX-203ENST00000381578 KIF21BO75037 1637 aa16.74■□□□□ 0.27
SHOX-203ENST00000381578 RAD54L2Q9Y4B4 1467 aa16.73■□□□□ 0.27
SHOX-203ENST00000381578 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.71■□□□□ 0.27
SHOX-203ENST00000381578 IGF1RP08069 1367 aa16.71■□□□□ 0.27
SHOX-203ENST00000381578 TDRD9Q8NDG6 1382 aaKnown RBP16.71■□□□□ 0.26
SHOX-203ENST00000381578 ZBTB47Q9UFB7 747 aaPredicted RBP16.7■□□□□ 0.26
SHOX-203ENST00000381578 ANO8Q9HCE9 1232 aaPredicted RBP16.69■□□□□ 0.26
SHOX-203ENST00000381578 NOP58Q9Y2X3 529 aaKnown RBP16.69■□□□□ 0.26
SHOX-203ENST00000381578 TOPBP1Q92547 1522 aa16.69■□□□□ 0.26
SHOX-203ENST00000381578 MYT1LQ9UL68 1186 aa16.68■□□□□ 0.26
SHOX-203ENST00000381578 LAMC3Q9Y6N6 1575 aa16.68■□□□□ 0.26
SHOX-203ENST00000381578 PRXQ9BXM0 1461 aa16.67■□□□□ 0.26
SHOX-203ENST00000381578 VPS8Q8N3P4 1428 aa16.67■□□□□ 0.26
SHOX-203ENST00000381578 TONSLQ96HA7 1378 aa16.67■□□□□ 0.26
SHOX-203ENST00000381578 DAXXQ9UER7 740 aaPredicted RBP16.66■□□□□ 0.26
SHOX-203ENST00000381578 MRS2Q9HD23 443 aa16.65■□□□□ 0.26
SHOX-203ENST00000381578 DNMBPQ6XZF7 1577 aa16.65■□□□□ 0.26
SHOX-203ENST00000381578 POLA1P09884 1462 aaPredicted RBP16.64■□□□□ 0.26
SHOX-203ENST00000381578 ERCC6Q03468 1493 aa16.64■□□□□ 0.25
SHOX-203ENST00000381578 LAS1LQ9Y4W2 734 aaKnown RBP16.64■□□□□ 0.25
SHOX-203ENST00000381578 PRDM2Q13029 1718 aa16.64■□□□□ 0.25
SHOX-203ENST00000381578 PPP4R2Q9NY27 417 aa16.63■□□□□ 0.25
SHOX-203ENST00000381578 SALL2Q9Y467 1007 aaPredicted RBP16.62■□□□□ 0.25
SHOX-203ENST00000381578 ERICH3Q5RHP9 1530 aa16.61■□□□□ 0.25
SHOX-203ENST00000381578 ZNF326Q5BKZ1 582 aaKnown RBP16.59■□□□□ 0.25
SHOX-203ENST00000381578 FBLN2P98095 1184 aa16.58■□□□□ 0.25
SHOX-203ENST00000381578 URB2Q14146 1524 aaKnown RBP16.58■□□□□ 0.24
SHOX-203ENST00000381578 FANCIQ9NVI1 1328 aa16.57■□□□□ 0.24
SHOX-203ENST00000381578 CCNB3Q8WWL7 1395 aa16.57■□□□□ 0.24
SHOX-203ENST00000381578 CCER2I3L3R5 266 aa16.57■□□□□ 0.24
SHOX-203ENST00000381578 RAB3GAP2Q9H2M9 1393 aa16.57■□□□□ 0.24
SHOX-203ENST00000381578 ARID3CA6NKF2 412 aa16.56■□□□□ 0.24
SHOX-203ENST00000381578 PAK3O75914 559 aaPredicted RBP16.53■□□□□ 0.24
SHOX-203ENST00000381578 ABCA10Q8WWZ4 1543 aa16.52■□□□□ 0.24
SHOX-203ENST00000381578 GAPVD1Q14C86 1478 aa16.52■□□□□ 0.23
SHOX-203ENST00000381578 NEFMP07197 916 aa16.5■□□□□ 0.23
SHOX-203ENST00000381578 CHIC2Q9UKJ5 165 aa16.5■□□□□ 0.23
SHOX-203ENST00000381578 IL27Q8NEV9 243 aa16.48■□□□□ 0.23
SHOX-203ENST00000381578 MRC2Q9UBG0 1479 aa16.48■□□□□ 0.23
SHOX-203ENST00000381578 PPP1R15AO75807 674 aaPredicted RBP16.48■□□□□ 0.23
SHOX-203ENST00000381578 ARAP1Q96P48 1450 aa16.46■□□□□ 0.23
SHOX-203ENST00000381578 AQRO60306 1485 aaKnown RBP eCLIP16.45■□□□□ 0.22
SHOX-203ENST00000381578 KIF21AQ7Z4S6 1674 aa16.44■□□□□ 0.22
SHOX-203ENST00000381578 ARXQ96QS3 562 aa16.44■□□□□ 0.22
SHOX-203ENST00000381578 CHMP7Q8WUX9 453 aaPredicted RBP16.44■□□□□ 0.22
SHOX-203ENST00000381578 ARHGAP35Q9NRY4 1499 aa16.43■□□□□ 0.22
SHOX-203ENST00000381578 FHOD3Q2V2M9 1422 aa16.41■□□□□ 0.22
SHOX-203ENST00000381578 FHAD1B1AJZ9 1412 aa16.4■□□□□ 0.22
SHOX-203ENST00000381578 EIF4G2P78344 907 aaKnown RBP eCLIP16.4■□□□□ 0.22
SHOX-203ENST00000381578 RRP7BPQ9NSQ0 103 aa16.39■□□□□ 0.21
SHOX-203ENST00000381578 SETD5Q9C0A6 1442 aa16.38■□□□□ 0.21
SHOX-203ENST00000381578 IPO9Q96P70 1041 aaKnown RBP16.37■□□□□ 0.21
SHOX-203ENST00000381578 HSPA5P11021 654 aaKnown RBP16.37■□□□□ 0.21
SHOX-203ENST00000381578 CCDC184Q52MB2 194 aa16.34■□□□□ 0.21
SHOX-203ENST00000381578 TMC1Q8TDI8 760 aa16.34■□□□□ 0.21
SHOX-203ENST00000381578 IFT140Q96RY7 1462 aa16.32■□□□□ 0.2
SHOX-203ENST00000381578 CUL7Q14999 1698 aa16.32■□□□□ 0.2
SHOX-203ENST00000381578 MTUS2Q5JR59 1369 aa16.31■□□□□ 0.2
SHOX-203ENST00000381578 GRIN2BQ13224 1484 aa16.31■□□□□ 0.2
SHOX-203ENST00000381578 FOXD1Q16676 465 aa16.29■□□□□ 0.2
SHOX-203ENST00000381578 FMN1Q68DA7 1419 aa16.28■□□□□ 0.2
SHOX-203ENST00000381578 ZNF608Q9ULD9 1512 aaPredicted RBP16.28■□□□□ 0.2
SHOX-203ENST00000381578 SLC4A3P48751 1232 aa16.26■□□□□ 0.19
SHOX-203ENST00000381578 WDR97A6NE52 1622 aa16.25■□□□□ 0.19
SHOX-203ENST00000381578 ERICH6BQ5W0A0 696 aa16.25■□□□□ 0.19
SHOX-203ENST00000381578 TIMELESSQ9UNS1 1208 aa16.24■□□□□ 0.19
SHOX-203ENST00000381578 ABCA5Q8WWZ7 1642 aa16.22■□□□□ 0.19
SHOX-203ENST00000381578 BRPF3Q9ULD4 1205 aa16.21■□□□□ 0.19
SHOX-203ENST00000381578 EFCAB5A4FU69 1503 aa16.2■□□□□ 0.18
SHOX-203ENST00000381578 TARBP1Q13395 1621 aaKnown RBP16.2■□□□□ 0.18
SHOX-203ENST00000381578 SNAPC4Q5SXM2 1469 aa16.2■□□□□ 0.18
SHOX-203ENST00000381578 PPM1GO15355 546 aaPredicted RBP16.2■□□□□ 0.18
SHOX-203ENST00000381578 PRKRIP1Q9H875 184 aaPredicted RBP16.18■□□□□ 0.18
SHOX-203ENST00000381578 WDR62O43379 1518 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms