RNA–Protein interactions for RNA: ENST00000381578.6

SHOX-203, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SHOX, Length 3,757 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-203ENST00000381578 NISCHQ9Y2I1 1504 aa23.37■■□□□ 1.33
SHOX-203ENST00000381578 SUPT5HO00267 1087 aaKnown RBP20.51■□□□□ 0.87
SHOX-203ENST00000381578 SHROOM4Q9ULL8 1493 aa20.37■□□□□ 0.85
SHOX-203ENST00000381578 DCAF8L2P0C7V8 631 aa20.33■□□□□ 0.84
SHOX-203ENST00000381578 PCGF6Q9BYE7 350 aa20.23■□□□□ 0.83
SHOX-203ENST00000381578 HRCP23327 699 aa20.05■□□□□ 0.8
SHOX-203ENST00000381578 PPARGC1BQ86YN6 1023 aaKnown RBP20.05■□□□□ 0.8
SHOX-203ENST00000381578 CCDC180Q9P1Z9 1646 aa19.97■□□□□ 0.79
SHOX-203ENST00000381578 ZCCHC6Q5VYS8 1495 aaKnown RBP19.59■□□□□ 0.73
SHOX-203ENST00000381578 EHMT2Q96KQ7 1210 aa19.55■□□□□ 0.72
SHOX-203ENST00000381578 PELP1Q8IZL8 1130 aaKnown RBP19.51■□□□□ 0.71
SHOX-203ENST00000381578 CHIC1Q5VXU3 224 aa19.4■□□□□ 0.7
SHOX-203ENST00000381578 LOC105371045A0A1W2PR82 267 aa19.39■□□□□ 0.69
SHOX-203ENST00000381578 ABCC9O60706 1549 aa19.32■□□□□ 0.68
SHOX-203ENST00000381578 FAM9AQ8IZU1 332 aaPredicted RBP19.2■□□□□ 0.66
SHOX-203ENST00000381578 TRIM26Q12899 539 aaPredicted RBP19.14■□□□□ 0.65
SHOX-203ENST00000381578 DCAF1Q9Y4B6 1507 aa19.05■□□□□ 0.64
SHOX-203ENST00000381578 SCAF1Q9H7N4 1312 aaKnown RBP19.04■□□□□ 0.64
SHOX-203ENST00000381578 MYO15BQ96JP2 1530 aa19.04■□□□□ 0.64
SHOX-203ENST00000381578 ZEB1P37275 1124 aaPredicted RBP19.02■□□□□ 0.64
SHOX-203ENST00000381578 TTBK1Q5TCY1 1321 aaPredicted RBP19■□□□□ 0.63
SHOX-203ENST00000381578 YTHDC1Q96MU7 727 aaKnown RBP18.88■□□□□ 0.61
SHOX-203ENST00000381578 CCER1Q8TC90 406 aaPredicted RBP18.86■□□□□ 0.61
SHOX-203ENST00000381578 CENPBP07199 599 aaPredicted RBP18.85■□□□□ 0.61
SHOX-203ENST00000381578 SCRIBQ14160 1630 aa18.84■□□□□ 0.61
SHOX-203ENST00000381578 GTF3C3Q9Y5Q9 886 aa18.79■□□□□ 0.6
SHOX-203ENST00000381578 NACADO15069 1562 aa18.75■□□□□ 0.59
SHOX-203ENST00000381578 MYT1Q01538 1121 aa18.75■□□□□ 0.59
SHOX-203ENST00000381578 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.72■□□□□ 0.59
SHOX-203ENST00000381578 TRIM41Q8WV44 630 aa18.71■□□□□ 0.59
SHOX-203ENST00000381578 NEUROD1Q13562 356 aa18.66■□□□□ 0.58
SHOX-203ENST00000381578 ACIN1Q9UKV3 1341 aaKnown RBP18.66■□□□□ 0.58
SHOX-203ENST00000381578 RB1CC1Q8TDY2 1594 aa18.62■□□□□ 0.57
SHOX-203ENST00000381578 DIEXFQ68CQ4 756 aaKnown RBP18.58■□□□□ 0.56
SHOX-203ENST00000381578 PABPN1Q86U42 306 aaKnown RBP eCLIP18.5■□□□□ 0.55
SHOX-203ENST00000381578 RSF1Q96T23 1441 aaPredicted RBP18.34■□□□□ 0.53
SHOX-203ENST00000381578 CECR2Q9BXF3 1484 aa18.29■□□□□ 0.52
SHOX-203ENST00000381578 RANGAP1P46060 587 aaPredicted RBP18.15■□□□□ 0.5
SHOX-203ENST00000381578 MROH2BQ7Z745 1585 aa18.13■□□□□ 0.49
SHOX-203ENST00000381578 HNRNPUL2Q1KMD3 747 aaKnown RBP18.11■□□□□ 0.49
SHOX-203ENST00000381578 BAZ1AQ9NRL2 1556 aaPredicted RBP18.05■□□□□ 0.48
SHOX-203ENST00000381578 ZNF316A6NFI3 1004 aaPredicted RBP18.05■□□□□ 0.48
SHOX-203ENST00000381578 UBTFP17480 764 aaKnown RBP18.04■□□□□ 0.48
SHOX-203ENST00000381578 BCANQ96GW7 911 aa17.99■□□□□ 0.47
SHOX-203ENST00000381578 MIER1Q8N108 512 aa17.99■□□□□ 0.47
SHOX-203ENST00000381578 WIZO95785 1651 aa17.97■□□□□ 0.47
SHOX-203ENST00000381578 APLP2Q06481 763 aa17.94■□□□□ 0.46
SHOX-203ENST00000381578 UNC13AQ9UPW8 1703 aa17.93■□□□□ 0.46
SHOX-203ENST00000381578 SMARCA4P51532 1647 aa17.86■□□□□ 0.45
SHOX-203ENST00000381578 BICRAQ9NZM4 1560 aa17.85■□□□□ 0.45
SHOX-203ENST00000381578 ERICH6Q7L0X2 663 aa17.79■□□□□ 0.44
SHOX-203ENST00000381578 TOP2AP11388 1531 aaKnown RBP17.72■□□□□ 0.43
SHOX-203ENST00000381578 NEFLP07196 543 aa17.71■□□□□ 0.43
SHOX-203ENST00000381578 CCDC88BA6NC98 1476 aa17.7■□□□□ 0.42
SHOX-203ENST00000381578 BAZ1BQ9UIG0 1483 aaKnown RBP17.68■□□□□ 0.42
SHOX-203ENST00000381578 BCL11AQ9H165 835 aa17.68■□□□□ 0.42
SHOX-203ENST00000381578 ITGAEP38570 1179 aa17.67■□□□□ 0.42
SHOX-203ENST00000381578 ATAD2BQ9ULI0 1458 aa17.63■□□□□ 0.41
SHOX-203ENST00000381578 ANP32EQ9BTT0 268 aa17.62■□□□□ 0.41
SHOX-203ENST00000381578 SUPT16HQ9Y5B9 1047 aaKnown RBP17.59■□□□□ 0.41
SHOX-203ENST00000381578 SMARCA2P51531 1590 aa17.59■□□□□ 0.41
SHOX-203ENST00000381578 FKBP8Q14318 412 aa17.55■□□□□ 0.4
SHOX-203ENST00000381578 CSRNP3Q8WYN3 585 aa17.52■□□□□ 0.39
SHOX-203ENST00000381578 TSHZ2Q9NRE2 1034 aa17.48■□□□□ 0.39
SHOX-203ENST00000381578 ABCC8Q09428 1581 aa17.47■□□□□ 0.39
SHOX-203ENST00000381578 EIF4G1Q04637 1599 aaKnown RBP17.47■□□□□ 0.39
SHOX-203ENST00000381578 PEG3Q9GZU2 1588 aa17.4■□□□□ 0.38
SHOX-203ENST00000381578 ATP1B4Q9UN42 357 aaPredicted RBP17.4■□□□□ 0.38
SHOX-203ENST00000381578 WRNQ14191 1432 aaPredicted RBP eCLIP17.39■□□□□ 0.38
SHOX-203ENST00000381578 TRIM52Q96A61 297 aa17.36■□□□□ 0.37
SHOX-203ENST00000381578 NCAPD3P42695 1498 aa17.36■□□□□ 0.37
SHOX-203ENST00000381578 DDX10Q13206 875 aaKnown RBP17.31■□□□□ 0.36
SHOX-203ENST00000381578 CEP162Q5TB80 1403 aa17.29■□□□□ 0.36
SHOX-203ENST00000381578 IRX6P78412 446 aaPredicted RBP17.29■□□□□ 0.36
SHOX-203ENST00000381578 HIRIP3Q9BW71 556 aaPredicted RBP17.29■□□□□ 0.36
SHOX-203ENST00000381578 CNGB1Q14028 1251 aaPredicted RBP17.28■□□□□ 0.36
SHOX-203ENST00000381578 SOGA1O94964 1423 aa17.28■□□□□ 0.36
SHOX-203ENST00000381578 KCNH8Q96L42 1107 aa17.28■□□□□ 0.36
SHOX-203ENST00000381578 CLSPNQ9HAW4 1339 aa17.27■□□□□ 0.36
SHOX-203ENST00000381578 HMGXB3Q12766 1538 aa17.23■□□□□ 0.35
SHOX-203ENST00000381578 RBM19Q9Y4C8 960 aaKnown RBP17.22■□□□□ 0.35
SHOX-203ENST00000381578 CDK11AQ9UQ88 783 aaPredicted RBP17.2■□□□□ 0.34
SHOX-203ENST00000381578 CC2D2AQ9P2K1 1620 aa17.18■□□□□ 0.34
SHOX-203ENST00000381578 EEA1Q15075 1411 aa17.18■□□□□ 0.34
SHOX-203ENST00000381578 NBR1Q14596 966 aa17.16■□□□□ 0.34
SHOX-203ENST00000381578 RUSC2Q8N2Y8 1516 aa17.14■□□□□ 0.33
SHOX-203ENST00000381578 ANP32CO43423 234 aa17.13■□□□□ 0.33
SHOX-203ENST00000381578 CADPSQ9ULU8 1353 aa17.12■□□□□ 0.33
SHOX-203ENST00000381578 SYNJ1O43426 1573 aa17.08■□□□□ 0.33
SHOX-203ENST00000381578 FAM50AQ14320 339 aaKnown RBP17.07■□□□□ 0.32
SHOX-203ENST00000381578 CFTRP13569 1480 aa17.06■□□□□ 0.32
SHOX-203ENST00000381578 HNRNPUQ00839 825 aaKnown RBP eCLIP17.05■□□□□ 0.32
SHOX-203ENST00000381578 GOLGA3Q08378 1498 aa17.04■□□□□ 0.32
SHOX-203ENST00000381578 RTL5Q5HYW3 569 aaPredicted RBP17.03■□□□□ 0.32
SHOX-203ENST00000381578 TNIKQ9UKE5 1360 aa17.02■□□□□ 0.31
SHOX-203ENST00000381578 CEP164Q9UPV0 1460 aa16.99■□□□□ 0.31
SHOX-203ENST00000381578 POLR3GLQ9BT43 218 aa16.99■□□□□ 0.31
SHOX-203ENST00000381578 KIF27Q86VH2 1401 aa16.97■□□□□ 0.31
SHOX-203ENST00000381578 CLIP1P30622 1438 aa16.97■□□□□ 0.31
SHOX-203ENST00000381578 DNAJC5BQ9UF47 199 aa16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms