RNA–Protein interactions for RNA: ENST00000375703.7

MSH5-201, Transcript of mutS homolog 5, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MSH5, Length 2,708 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-201ENST00000375703 CC2D2AQ9P2K1 1620 aa21.09■□□□□ 0.97
MSH5-201ENST00000375703 ATP1B4Q9UN42 357 aaPredicted RBP21.07■□□□□ 0.96
MSH5-201ENST00000375703 SETD5Q9C0A6 1442 aa21.07■□□□□ 0.96
MSH5-201ENST00000375703 PHLDB1Q86UU1 1377 aa21.06■□□□□ 0.96
MSH5-201ENST00000375703 FAM50AQ14320 339 aaKnown RBP21.06■□□□□ 0.96
MSH5-201ENST00000375703 RAD54L2Q9Y4B4 1467 aa21.03■□□□□ 0.96
MSH5-201ENST00000375703 MAPKBP1O60336 1514 aa21■□□□□ 0.95
MSH5-201ENST00000375703 DNMBPQ6XZF7 1577 aa21■□□□□ 0.95
MSH5-201ENST00000375703 ABCA10Q8WWZ4 1543 aa21■□□□□ 0.95
MSH5-201ENST00000375703 MYT1Q01538 1121 aa20.98■□□□□ 0.95
MSH5-201ENST00000375703 FHOD3Q2V2M9 1422 aa20.97■□□□□ 0.95
MSH5-201ENST00000375703 PCF11O94913 1555 aaKnown RBP20.97■□□□□ 0.95
MSH5-201ENST00000375703 POLA1P09884 1462 aaPredicted RBP20.97■□□□□ 0.95
MSH5-201ENST00000375703 TOPBP1Q92547 1522 aa20.97■□□□□ 0.95
MSH5-201ENST00000375703 CFAP43Q8NDM7 1665 aa20.95■□□□□ 0.94
MSH5-201ENST00000375703 SIN3AQ96ST3 1273 aa20.92■□□□□ 0.94
MSH5-201ENST00000375703 CASKIN1Q8WXD9 1431 aa20.92■□□□□ 0.94
MSH5-201ENST00000375703 NESP48681 1621 aa20.91■□□□□ 0.94
MSH5-201ENST00000375703 FYCO1Q9BQS8 1478 aa20.91■□□□□ 0.94
MSH5-201ENST00000375703 EFCAB5A4FU69 1503 aa20.91■□□□□ 0.94
MSH5-201ENST00000375703 AQRO60306 1485 aaKnown RBP eCLIP20.89■□□□□ 0.932e-8■■■■■ 33.7
MSH5-201ENST00000375703 CUL7Q14999 1698 aa20.87■□□□□ 0.93
MSH5-201ENST00000375703 TIMELESSQ9UNS1 1208 aa20.86■□□□□ 0.93
MSH5-201ENST00000375703 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.86■□□□□ 0.93
MSH5-201ENST00000375703 FMN1Q68DA7 1419 aa20.84■□□□□ 0.93
MSH5-201ENST00000375703 WDR97A6NE52 1622 aa20.82■□□□□ 0.92
MSH5-201ENST00000375703 CTTNBP2Q8WZ74 1663 aa20.81■□□□□ 0.92
MSH5-201ENST00000375703 DDX10Q13206 875 aaKnown RBP20.79■□□□□ 0.92
MSH5-201ENST00000375703 SUPT16HQ9Y5B9 1047 aaKnown RBP20.78■□□□□ 0.92
MSH5-201ENST00000375703 TDRD9Q8NDG6 1382 aaKnown RBP20.78■□□□□ 0.92
MSH5-201ENST00000375703 MTUS2Q5JR59 1369 aa20.78■□□□□ 0.92
MSH5-201ENST00000375703 URB2Q14146 1524 aaKnown RBP20.78■□□□□ 0.92
MSH5-201ENST00000375703 PPP1R15AO75807 674 aaPredicted RBP20.77■□□□□ 0.92
MSH5-201ENST00000375703 KCNH8Q96L42 1107 aa20.77■□□□□ 0.92
MSH5-201ENST00000375703 FGD6Q6ZV73 1430 aa20.77■□□□□ 0.92
MSH5-201ENST00000375703 LAMC3Q9Y6N6 1575 aa20.75■□□□□ 0.91
MSH5-201ENST00000375703 SNAPC4Q5SXM2 1469 aa20.75■□□□□ 0.91
MSH5-201ENST00000375703 GAPVD1Q14C86 1478 aa20.72■□□□□ 0.91
MSH5-201ENST00000375703 HIRIP3Q9BW71 556 aaPredicted RBP20.69■□□□□ 0.9
MSH5-201ENST00000375703 PDS5BQ9NTI5 1447 aa20.68■□□□□ 0.9
MSH5-201ENST00000375703 ABCA5Q8WWZ7 1642 aa20.68■□□□□ 0.9
MSH5-201ENST00000375703 SAMD9Q5K651 1589 aa20.67■□□□□ 0.9
MSH5-201ENST00000375703 PTPRKQ15262 1439 aa20.67■□□□□ 0.9
MSH5-201ENST00000375703 CCDC18Q5T9S5 1454 aa20.66■□□□□ 0.9
MSH5-201ENST00000375703 HFM1A2PYH4 1435 aa20.66■□□□□ 0.9
MSH5-201ENST00000375703 TONSLQ96HA7 1378 aa20.65■□□□□ 0.9
MSH5-201ENST00000375703 GRIN2BQ13224 1484 aa20.64■□□□□ 0.9
MSH5-201ENST00000375703 NCOA2Q15596 1464 aa20.64■□□□□ 0.9
MSH5-201ENST00000375703 UACAQ9BZF9 1416 aa20.64■□□□□ 0.89
MSH5-201ENST00000375703 MYOM3Q5VTT5 1437 aa20.63■□□□□ 0.89
MSH5-201ENST00000375703 NAIPQ13075 1403 aa20.59■□□□□ 0.89
MSH5-201ENST00000375703 PTPN23Q9H3S7 1636 aa20.59■□□□□ 0.89
MSH5-201ENST00000375703 LRRIQ1Q96JM4 1722 aa20.59■□□□□ 0.89
MSH5-201ENST00000375703 ANP32CO43423 234 aa20.58■□□□□ 0.89
MSH5-201ENST00000375703 THOC2Q8NI27 1593 aaKnown RBP20.58■□□□□ 0.88
MSH5-201ENST00000375703 DNAJC5BQ9UF47 199 aa20.58■□□□□ 0.88
MSH5-201ENST00000375703 SUPT6HQ7KZ85 1726 aaKnown RBP20.57■□□□□ 0.88
MSH5-201ENST00000375703 CCER2I3L3R5 266 aa20.56■□□□□ 0.88
MSH5-201ENST00000375703 EHBP1L1Q8N3D4 1523 aa20.56■□□□□ 0.88
MSH5-201ENST00000375703 UGGT2Q9NYU1 1516 aa20.52■□□□□ 0.88
MSH5-201ENST00000375703 RRP7BPQ9NSQ0 103 aa20.52■□□□□ 0.87
MSH5-201ENST00000375703 CHIC2Q9UKJ5 165 aa20.5■□□□□ 0.87
MSH5-201ENST00000375703 TARBP1Q13395 1621 aaKnown RBP20.5■□□□□ 0.87
MSH5-201ENST00000375703 ARHGEF11O15085 1522 aa20.49■□□□□ 0.87
MSH5-201ENST00000375703 MAGI3Q5TCQ9 1506 aa20.49■□□□□ 0.87
MSH5-201ENST00000375703 KIF21AQ7Z4S6 1674 aa20.49■□□□□ 0.87
MSH5-201ENST00000375703 TRIM52Q96A61 297 aa20.46■□□□□ 0.87
MSH5-201ENST00000375703 FKBP8Q14318 412 aa20.45■□□□□ 0.86
MSH5-201ENST00000375703 TCOF1Q13428 1488 aaKnown RBP20.44■□□□□ 0.86
MSH5-201ENST00000375703 TSHZ2Q9NRE2 1034 aa20.43■□□□□ 0.86
MSH5-201ENST00000375703 HECW1Q76N89 1606 aa20.43■□□□□ 0.86
MSH5-201ENST00000375703 EPRSP07814 1512 aaKnown RBP20.42■□□□□ 0.86
MSH5-201ENST00000375703 BCANQ96GW7 911 aa20.42■□□□□ 0.86
MSH5-201ENST00000375703 IQGAP2Q13576 1575 aa20.41■□□□□ 0.86
MSH5-201ENST00000375703 ARID3CA6NKF2 412 aa20.4■□□□□ 0.86
MSH5-201ENST00000375703 KDM5BQ9UGL1 1544 aa20.39■□□□□ 0.85
MSH5-201ENST00000375703 MIA2Q96PC5 1412 aa20.38■□□□□ 0.85
MSH5-201ENST00000375703 PBRM1Q86U86 1689 aa20.38■□□□□ 0.85
MSH5-201ENST00000375703 NEFLP07196 543 aa20.37■□□□□ 0.85
MSH5-201ENST00000375703 MPHOSPH9Q99550 1183 aa20.37■□□□□ 0.85
MSH5-201ENST00000375703 AKNAQ7Z591 1439 aa20.37■□□□□ 0.85
MSH5-201ENST00000375703 CDK13Q14004 1512 aaKnown RBP20.36■□□□□ 0.85
MSH5-201ENST00000375703 HSPA5P11021 654 aaKnown RBP20.35■□□□□ 0.85
MSH5-201ENST00000375703 DENND4BO75064 1496 aaPredicted RBP20.34■□□□□ 0.85
MSH5-201ENST00000375703 ADAMTS12P58397 1594 aa20.34■□□□□ 0.85
MSH5-201ENST00000375703 GCC2Q8IWJ2 1684 aa20.34■□□□□ 0.85
MSH5-201ENST00000375703 EIF4G2P78344 907 aaKnown RBP eCLIP20.32■□□□□ 0.84
MSH5-201ENST00000375703 WDR62O43379 1518 aa20.31■□□□□ 0.84
MSH5-201ENST00000375703 KDM6BO15054 1643 aa20.31■□□□□ 0.84
MSH5-201ENST00000375703 MRC2Q9UBG0 1479 aa20.31■□□□□ 0.84
MSH5-201ENST00000375703 WASHC2AQ641Q2 1341 aa20.31■□□□□ 0.84
MSH5-201ENST00000375703 L3MBTL2Q969R5 705 aa20.29■□□□□ 0.84
MSH5-201ENST00000375703 FOXD1Q16676 465 aa20.28■□□□□ 0.84
MSH5-201ENST00000375703 ROCK1Q13464 1354 aa20.24■□□□□ 0.83
MSH5-201ENST00000375703 DAPK1P53355 1430 aa20.24■□□□□ 0.83
MSH5-201ENST00000375703 KIAA0586Q9BVV6 1533 aa20.23■□□□□ 0.83
MSH5-201ENST00000375703 HNRNPUQ00839 825 aaKnown RBP eCLIP20.23■□□□□ 0.83
MSH5-201ENST00000375703 CDK11AQ9UQ88 783 aaPredicted RBP20.23■□□□□ 0.83
MSH5-201ENST00000375703 ZNF608Q9ULD9 1512 aaPredicted RBP20.23■□□□□ 0.83
MSH5-201ENST00000375703 ZNF644Q9H582 1327 aaPredicted RBP20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms