RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 DSG3P32926 999 aa13.37□□□□□ -0.27
SNRNP40-202ENST00000373720 CUX2O14529 1486 aa13.36□□□□□ -0.27
SNRNP40-202ENST00000373720 TOPBP1Q92547 1522 aa13.35□□□□□ -0.27
SNRNP40-202ENST00000373720 CUL7Q14999 1698 aa13.33□□□□□ -0.28
SNRNP40-202ENST00000373720 CARMIL1Q5VZK9 1371 aa13.32□□□□□ -0.28
SNRNP40-202ENST00000373720 MAP3K1Q13233 1512 aa13.31□□□□□ -0.28
SNRNP40-202ENST00000373720 WDR97A6NE52 1622 aa13.3□□□□□ -0.28
SNRNP40-202ENST00000373720 POLA1P09884 1462 aaPredicted RBP13.29□□□□□ -0.28
SNRNP40-202ENST00000373720 EHMT2Q96KQ7 1210 aa13.29□□□□□ -0.28
SNRNP40-202ENST00000373720 POTEHQ6S545 545 aa13.26□□□□□ -0.29
SNRNP40-202ENST00000373720 FHAD1B1AJZ9 1412 aa13.25□□□□□ -0.29
SNRNP40-202ENST00000373720 EFCAB5A4FU69 1503 aa13.24□□□□□ -0.29
SNRNP40-202ENST00000373720 KCNA4P22459 653 aa13.22□□□□□ -0.29
SNRNP40-202ENST00000373720 URB2Q14146 1524 aaKnown RBP13.22□□□□□ -0.29
SNRNP40-202ENST00000373720 NESP48681 1621 aa13.21□□□□□ -0.3
SNRNP40-202ENST00000373720 ARAP1Q96P48 1450 aa13.2□□□□□ -0.3
SNRNP40-202ENST00000373720 AQRO60306 1485 aaKnown RBP eCLIP13.18□□□□□ -0.31e-7■■□□□ 13.2
SNRNP40-202ENST00000373720 ARHGAP35Q9NRY4 1499 aa13.18□□□□□ -0.3
SNRNP40-202ENST00000373720 MRC2Q9UBG0 1479 aa13.18□□□□□ -0.3
SNRNP40-202ENST00000373720 ABCA5Q8WWZ7 1642 aa13.18□□□□□ -0.3
SNRNP40-202ENST00000373720 TRHP20396 242 aaPredicted RBP13.18□□□□□ -0.3
SNRNP40-202ENST00000373720 GAPVD1Q14C86 1478 aa13.16□□□□□ -0.3
SNRNP40-202ENST00000373720 SLC4A2P04920 1241 aa13.16□□□□□ -0.3
SNRNP40-202ENST00000373720 CLSPNQ9HAW4 1339 aa13.15□□□□□ -0.3
SNRNP40-202ENST00000373720 RAD54L2Q9Y4B4 1467 aa13.14□□□□□ -0.31
SNRNP40-202ENST00000373720 FMN1Q68DA7 1419 aa13.13□□□□□ -0.31
SNRNP40-202ENST00000373720 IFT140Q96RY7 1462 aa13.13□□□□□ -0.31
SNRNP40-202ENST00000373720 TARBP1Q13395 1621 aaKnown RBP13.12□□□□□ -0.31
SNRNP40-202ENST00000373720 WDR62O43379 1518 aa13.11□□□□□ -0.31
SNRNP40-202ENST00000373720 KIF21AQ7Z4S6 1674 aa13.11□□□□□ -0.31
SNRNP40-202ENST00000373720 CTTNBP2Q8WZ74 1663 aa13.11□□□□□ -0.31
SNRNP40-202ENST00000373720 ZNF219Q9P2Y4 722 aaPredicted RBP13.1□□□□□ -0.31
SNRNP40-202ENST00000373720 FYCO1Q9BQS8 1478 aa13.1□□□□□ -0.31
SNRNP40-202ENST00000373720 ABCB7O75027 752 aa13.09□□□□□ -0.31
SNRNP40-202ENST00000373720 CCER1Q8TC90 406 aaPredicted RBP13.09□□□□□ -0.31
SNRNP40-202ENST00000373720 RRBP1Q9P2E9 1410 aaKnown RBP13.09□□□□□ -0.31
SNRNP40-202ENST00000373720 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.08□□□□□ -0.32
SNRNP40-202ENST00000373720 HNRNPUL2Q1KMD3 747 aaKnown RBP13.08□□□□□ -0.32
SNRNP40-202ENST00000373720 GRIN2BQ13224 1484 aa13.08□□□□□ -0.32
SNRNP40-202ENST00000373720 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.07□□□□□ -0.32
SNRNP40-202ENST00000373720 CASKIN1Q8WXD9 1431 aa13.07□□□□□ -0.32
SNRNP40-202ENST00000373720 THOC2Q8NI27 1593 aaKnown RBP13.07□□□□□ -0.32
SNRNP40-202ENST00000373720 TIAM1Q13009 1591 aa13.05□□□□□ -0.32
SNRNP40-202ENST00000373720 ACIN1Q9UKV3 1341 aaKnown RBP13.04□□□□□ -0.32
SNRNP40-202ENST00000373720 PPARGC1BQ86YN6 1023 aaKnown RBP13.03□□□□□ -0.32
SNRNP40-202ENST00000373720 SAMD9Q5K651 1589 aa13.03□□□□□ -0.32
SNRNP40-202ENST00000373720 TDRD9Q8NDG6 1382 aaKnown RBP13.02□□□□□ -0.33
SNRNP40-202ENST00000373720 LRRC9Q6ZRR7 1453 aa13.01□□□□□ -0.33
SNRNP40-202ENST00000373720 CCNB3Q8WWL7 1395 aa13□□□□□ -0.33
SNRNP40-202ENST00000373720 CFAP43Q8NDM7 1665 aa12.99□□□□□ -0.33
SNRNP40-202ENST00000373720 PBRM1Q86U86 1689 aa12.99□□□□□ -0.33
SNRNP40-202ENST00000373720 MAGI1Q96QZ7 1491 aaPredicted RBP12.97□□□□□ -0.33
SNRNP40-202ENST00000373720 SAMD1Q6SPF0 538 aaPredicted RBP12.97□□□□□ -0.33
SNRNP40-202ENST00000373720 ADAMTS12P58397 1594 aa12.97□□□□□ -0.33
SNRNP40-202ENST00000373720 ERCC6Q03468 1493 aa12.97□□□□□ -0.33
SNRNP40-202ENST00000373720 CCDC18Q5T9S5 1454 aa12.97□□□□□ -0.33
SNRNP40-202ENST00000373720 IQGAP2Q13576 1575 aa12.94□□□□□ -0.34
SNRNP40-202ENST00000373720 KIAA0586Q9BVV6 1533 aa12.94□□□□□ -0.34
SNRNP40-202ENST00000373720 UGGT2Q9NYU1 1516 aa12.94□□□□□ -0.34
SNRNP40-202ENST00000373720 RANGAP1P46060 587 aaPredicted RBP12.94□□□□□ -0.34
SNRNP40-202ENST00000373720 KANK4Q5T7N3 995 aaPredicted RBP12.93□□□□□ -0.34
SNRNP40-202ENST00000373720 SNAPC4Q5SXM2 1469 aa12.91□□□□□ -0.34
SNRNP40-202ENST00000373720 PCF11O94913 1555 aaKnown RBP12.91□□□□□ -0.34
SNRNP40-202ENST00000373720 FHOD3Q2V2M9 1422 aa12.89□□□□□ -0.35
SNRNP40-202ENST00000373720 TIMELESSQ9UNS1 1208 aa12.89□□□□□ -0.35
SNRNP40-202ENST00000373720 HECW1Q76N89 1606 aa12.88□□□□□ -0.35
SNRNP40-202ENST00000373720 SYNJ2O15056 1496 aa12.87□□□□□ -0.35
SNRNP40-202ENST00000373720 EHBP1L1Q8N3D4 1523 aa12.87□□□□□ -0.35
SNRNP40-202ENST00000373720 GRIN2AQ12879 1464 aa12.86□□□□□ -0.35
SNRNP40-202ENST00000373720 MTUS2Q5JR59 1369 aa12.85□□□□□ -0.35
SNRNP40-202ENST00000373720 EIF4G3O43432 1585 aaKnown RBP12.84□□□□□ -0.35
SNRNP40-202ENST00000373720 TTBK1Q5TCY1 1321 aaPredicted RBP12.84□□□□□ -0.35
SNRNP40-202ENST00000373720 CDK11AQ9UQ88 783 aaPredicted RBP12.83□□□□□ -0.36
SNRNP40-202ENST00000373720 CARMIL2Q6F5E8 1435 aa12.82□□□□□ -0.36
SNRNP40-202ENST00000373720 MIA2Q96PC5 1412 aa12.82□□□□□ -0.36
SNRNP40-202ENST00000373720 RBM42Q9BTD8 480 aaKnown RBP12.82□□□□□ -0.36
SNRNP40-202ENST00000373720 SUPT6HQ7KZ85 1726 aaKnown RBP12.82□□□□□ -0.36
SNRNP40-202ENST00000373720 SETD5Q9C0A6 1442 aa12.81□□□□□ -0.36
SNRNP40-202ENST00000373720 DHX57Q6P158 1386 aaKnown RBP12.8□□□□□ -0.36
SNRNP40-202ENST00000373720 PHLDB1Q86UU1 1377 aa12.8□□□□□ -0.36
SNRNP40-202ENST00000373720 ARHGEF11O15085 1522 aa12.79□□□□□ -0.36
SNRNP40-202ENST00000373720 ZNF608Q9ULD9 1512 aaPredicted RBP12.79□□□□□ -0.36
SNRNP40-202ENST00000373720 NUP160Q12769 1436 aa12.79□□□□□ -0.36
SNRNP40-202ENST00000373720 MYOM3Q5VTT5 1437 aa12.79□□□□□ -0.36
SNRNP40-202ENST00000373720 FGD6Q6ZV73 1430 aa12.79□□□□□ -0.36
SNRNP40-202ENST00000373720 CHMP7Q8WUX9 453 aaPredicted RBP12.78□□□□□ -0.36
SNRNP40-202ENST00000373720 AKNAQ7Z591 1439 aa12.78□□□□□ -0.36
SNRNP40-202ENST00000373720 KIAA0556O60303 1618 aa12.77□□□□□ -0.36
SNRNP40-202ENST00000373720 P3H3Q8IVL6 736 aa12.77□□□□□ -0.37
SNRNP40-202ENST00000373720 EPRSP07814 1512 aaKnown RBP12.77□□□□□ -0.37
SNRNP40-202ENST00000373720 ZNF316A6NFI3 1004 aaPredicted RBP12.76□□□□□ -0.37
SNRNP40-202ENST00000373720 TCOF1Q13428 1488 aaKnown RBP12.75□□□□□ -0.37
SNRNP40-202ENST00000373720 NCOA2Q15596 1464 aa12.75□□□□□ -0.37
SNRNP40-202ENST00000373720 ATP1B4Q9UN42 357 aaPredicted RBP12.75□□□□□ -0.37
SNRNP40-202ENST00000373720 DISP1Q96F81 1524 aa12.74□□□□□ -0.37
SNRNP40-202ENST00000373720 POLA2Q14181 598 aa12.74□□□□□ -0.37
SNRNP40-202ENST00000373720 MYCNP04198 464 aaPredicted RBP12.73□□□□□ -0.37
SNRNP40-202ENST00000373720 HFM1A2PYH4 1435 aa12.72□□□□□ -0.37
SNRNP40-202ENST00000373720 RAB3GAP2Q9H2M9 1393 aa12.72□□□□□ -0.37
SNRNP40-202ENST00000373720 RAPGEF6Q8TEU7 1601 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms