RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 BIVM-ERCC5R4GMW8 1640 aa19.44■□□□□ 0.7
USP49-201ENST00000373006 WDR97A6NE52 1622 aa19.41■□□□□ 0.7
USP49-201ENST00000373006 NEFLP07196 543 aa19.4■□□□□ 0.7
USP49-201ENST00000373006 CUX1P39880 1505 aa19.4■□□□□ 0.7
USP49-201ENST00000373006 P3H3Q8IVL6 736 aa19.4■□□□□ 0.7
USP49-201ENST00000373006 SETD5Q9C0A6 1442 aa19.4■□□□□ 0.7
USP49-201ENST00000373006 PPP1R15AO75807 674 aaPredicted RBP19.39■□□□□ 0.69
USP49-201ENST00000373006 RBM19Q9Y4C8 960 aaKnown RBP19.38■□□□□ 0.69
USP49-201ENST00000373006 PHLDB1Q86UU1 1377 aa19.34■□□□□ 0.69
USP49-201ENST00000373006 ANP32CO43423 234 aa19.33■□□□□ 0.69
USP49-201ENST00000373006 TIAM1Q13009 1591 aa19.27■□□□□ 0.67
USP49-201ENST00000373006 IGF1RP08069 1367 aa19.26■□□□□ 0.67
USP49-201ENST00000373006 LRRC9Q6ZRR7 1453 aa19.26■□□□□ 0.67
USP49-201ENST00000373006 CCER2I3L3R5 266 aa19.25■□□□□ 0.67
USP49-201ENST00000373006 ERICH6Q7L0X2 663 aa19.24■□□□□ 0.67
USP49-201ENST00000373006 IRX6P78412 446 aaPredicted RBP19.22■□□□□ 0.67
USP49-201ENST00000373006 TIMELESSQ9UNS1 1208 aa19.2■□□□□ 0.66
USP49-201ENST00000373006 CARMIL1Q5VZK9 1371 aa19.2■□□□□ 0.66
USP49-201ENST00000373006 MSH5O43196 834 aa19.17■□□□□ 0.66
USP49-201ENST00000373006 NCAPD3P42695 1498 aa19.16■□□□□ 0.66
USP49-201ENST00000373006 CFTRP13569 1480 aa19.15■□□□□ 0.66
USP49-201ENST00000373006 MAP3K1Q13233 1512 aa19.15■□□□□ 0.66
USP49-201ENST00000373006 TONSLQ96HA7 1378 aa19.15■□□□□ 0.66
USP49-201ENST00000373006 HNRNPUQ00839 825 aaKnown RBP eCLIP19.15■□□□□ 0.66
USP49-201ENST00000373006 DNAJC5BQ9UF47 199 aa19.1■□□□□ 0.65
USP49-201ENST00000373006 FHAD1B1AJZ9 1412 aa19.1■□□□□ 0.65
USP49-201ENST00000373006 FHOD3Q2V2M9 1422 aa19.08■□□□□ 0.65
USP49-201ENST00000373006 HMGXB3Q12766 1538 aa19.07■□□□□ 0.64
USP49-201ENST00000373006 PCF11O94913 1555 aaKnown RBP19.06■□□□□ 0.64
USP49-201ENST00000373006 CDK11AQ9UQ88 783 aaPredicted RBP19.05■□□□□ 0.64
USP49-201ENST00000373006 FGD5Q6ZNL6 1462 aa19.02■□□□□ 0.63
USP49-201ENST00000373006 CADPSQ9ULU8 1353 aa18.99■□□□□ 0.63
USP49-201ENST00000373006 ANO8Q9HCE9 1232 aaPredicted RBP18.99■□□□□ 0.63
USP49-201ENST00000373006 CCDC18Q5T9S5 1454 aa18.98■□□□□ 0.63
USP49-201ENST00000373006 PTPRKQ15262 1439 aa18.97■□□□□ 0.63
USP49-201ENST00000373006 CFAP43Q8NDM7 1665 aa18.97■□□□□ 0.63
USP49-201ENST00000373006 CCDC184Q52MB2 194 aa18.97■□□□□ 0.63
USP49-201ENST00000373006 FGD6Q6ZV73 1430 aa18.96■□□□□ 0.63
USP49-201ENST00000373006 FANCIQ9NVI1 1328 aa18.95■□□□□ 0.62
USP49-201ENST00000373006 WASHC2AQ641Q2 1341 aa18.95■□□□□ 0.62
USP49-201ENST00000373006 HSPA5P11021 654 aaKnown RBP18.95■□□□□ 0.62
USP49-201ENST00000373006 CC2D2AQ9P2K1 1620 aa18.94■□□□□ 0.62
USP49-201ENST00000373006 NBR1Q14596 966 aa18.94■□□□□ 0.62
USP49-201ENST00000373006 UACAQ9BZF9 1416 aa18.93■□□□□ 0.62
USP49-201ENST00000373006 MTUS2Q5JR59 1369 aa18.93■□□□□ 0.62
USP49-201ENST00000373006 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.93■□□□□ 0.62
USP49-201ENST00000373006 CCDC136Q96JN2 1154 aa18.92■□□□□ 0.62
USP49-201ENST00000373006 CASKIN1Q8WXD9 1431 aa18.92■□□□□ 0.62
USP49-201ENST00000373006 FAM9BQ8IZU0 186 aa18.91■□□□□ 0.62
USP49-201ENST00000373006 AQRO60306 1485 aaKnown RBP eCLIP18.91■□□□□ 0.62
USP49-201ENST00000373006 FYCO1Q9BQS8 1478 aa18.91■□□□□ 0.62
USP49-201ENST00000373006 CHIC2Q9UKJ5 165 aa18.91■□□□□ 0.62
USP49-201ENST00000373006 RAD54L2Q9Y4B4 1467 aa18.91■□□□□ 0.62
USP49-201ENST00000373006 RRP7BPQ9NSQ0 103 aa18.91■□□□□ 0.62
USP49-201ENST00000373006 HFM1A2PYH4 1435 aa18.9■□□□□ 0.62
USP49-201ENST00000373006 B4GALNT3Q6L9W6 998 aa18.89■□□□□ 0.61
USP49-201ENST00000373006 ARID3CA6NKF2 412 aa18.87■□□□□ 0.61
USP49-201ENST00000373006 RTN4Q9NQC3 1192 aaKnown RBP18.87■□□□□ 0.61
USP49-201ENST00000373006 PPP4R2Q9NY27 417 aa18.87■□□□□ 0.61
USP49-201ENST00000373006 NESP48681 1621 aa18.87■□□□□ 0.61
USP49-201ENST00000373006 NAIPQ13075 1403 aa18.87■□□□□ 0.61
USP49-201ENST00000373006 DEKP35659 375 aaKnown RBP18.87■□□□□ 0.61
USP49-201ENST00000373006 EIF4G2P78344 907 aaKnown RBP eCLIP18.85■□□□□ 0.61
USP49-201ENST00000373006 PTPN23Q9H3S7 1636 aa18.84■□□□□ 0.61
USP49-201ENST00000373006 C11orf95C9JLR9 678 aaPredicted RBP18.84■□□□□ 0.61
USP49-201ENST00000373006 FOXD1Q16676 465 aa18.82■□□□□ 0.6
USP49-201ENST00000373006 MRS2Q9HD23 443 aa18.82■□□□□ 0.6
USP49-201ENST00000373006 KDM5BQ9UGL1 1544 aa18.82■□□□□ 0.6
USP49-201ENST00000373006 CNGB1Q14028 1251 aaPredicted RBP18.82■□□□□ 0.6
USP49-201ENST00000373006 FANCD2Q9BXW9 1451 aa18.81■□□□□ 0.6
USP49-201ENST00000373006 FMN1Q68DA7 1419 aa18.81■□□□□ 0.6
USP49-201ENST00000373006 PRKRIP1Q9H875 184 aaPredicted RBP18.79■□□□□ 0.6
USP49-201ENST00000373006 L3MBTL2Q969R5 705 aa18.78■□□□□ 0.6
USP49-201ENST00000373006 NCOA2Q15596 1464 aa18.78■□□□□ 0.6
USP49-201ENST00000373006 EFCAB5A4FU69 1503 aa18.78■□□□□ 0.6
USP49-201ENST00000373006 ERICH6BQ5W0A0 696 aa18.78■□□□□ 0.6
USP49-201ENST00000373006 TDRD9Q8NDG6 1382 aaKnown RBP18.77■□□□□ 0.6
USP49-201ENST00000373006 MYOM3Q5VTT5 1437 aa18.77■□□□□ 0.6
USP49-201ENST00000373006 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.76■□□□□ 0.59
USP49-201ENST00000373006 PRDM2Q13029 1718 aa18.76■□□□□ 0.59
USP49-201ENST00000373006 SNAPC4Q5SXM2 1469 aa18.76■□□□□ 0.59
USP49-201ENST00000373006 SALL2Q9Y467 1007 aaPredicted RBP18.75■□□□□ 0.59
USP49-201ENST00000373006 CNTLNQ9NXG0 1405 aa18.74■□□□□ 0.59
USP49-201ENST00000373006 SENP3-EIF4A1A0A087X0R7 540 aa18.74■□□□□ 0.59
USP49-201ENST00000373006 MPHOSPH9Q99550 1183 aa18.73■□□□□ 0.59
USP49-201ENST00000373006 ZBED9Q6R2W3 1325 aa18.71■□□□□ 0.59
USP49-201ENST00000373006 CCDC7Q96M83 1385 aa18.7■□□□□ 0.58
USP49-201ENST00000373006 DENND4BO75064 1496 aaPredicted RBP18.7■□□□□ 0.58
USP49-201ENST00000373006 POLA1P09884 1462 aaPredicted RBP18.7■□□□□ 0.58
USP49-201ENST00000373006 ABCA10Q8WWZ4 1543 aa18.69■□□□□ 0.58
USP49-201ENST00000373006 NBPF8Q3BBV2 869 aa18.69■□□□□ 0.58
USP49-201ENST00000373006 PAK3O75914 559 aaPredicted RBP18.67■□□□□ 0.58
USP49-201ENST00000373006 POLR3GLQ9BT43 218 aa18.66■□□□□ 0.58
USP49-201ENST00000373006 NOP58Q9Y2X3 529 aaKnown RBP18.65■□□□□ 0.58
USP49-201ENST00000373006 NCOA1Q15788 1441 aa18.64■□□□□ 0.58
USP49-201ENST00000373006 TOPBP1Q92547 1522 aa18.64■□□□□ 0.58
USP49-201ENST00000373006 LRRIQ1Q96JM4 1722 aa18.64■□□□□ 0.57
USP49-201ENST00000373006 KIF7Q2M1P5 1343 aa18.64■□□□□ 0.57
USP49-201ENST00000373006 CTTNBP2Q8WZ74 1663 aa18.64■□□□□ 0.57
USP49-201ENST00000373006 KDM6BO15054 1643 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms