RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 PLEKHG5O94827 1062 aa6.5□□□□□ -1.37
MCF2-203ENST00000370576 URB2Q14146 1524 aaKnown RBP6.49□□□□□ -1.37
MCF2-203ENST00000370576 SAMD9Q5K651 1589 aa6.49□□□□□ -1.37
MCF2-203ENST00000370576 TOPBP1Q92547 1522 aa6.49□□□□□ -1.37
MCF2-203ENST00000370576 UBTFP17480 764 aaKnown RBP6.48□□□□□ -1.37
MCF2-203ENST00000370576 CUX2O14529 1486 aa6.48□□□□□ -1.37
MCF2-203ENST00000370576 WRNQ14191 1432 aaPredicted RBP eCLIP6.48□□□□□ -1.37
MCF2-203ENST00000370576 FKBP8Q14318 412 aa6.46□□□□□ -1.38
MCF2-203ENST00000370576 ADAMTS12P58397 1594 aa6.45□□□□□ -1.38
MCF2-203ENST00000370576 SHROOM2Q13796 1616 aa6.45□□□□□ -1.38
MCF2-203ENST00000370576 FANCD2Q9BXW9 1451 aa6.45□□□□□ -1.38
MCF2-203ENST00000370576 C14orf37Q86TY3 774 aa6.44□□□□□ -1.38
MCF2-203ENST00000370576 CFAP43Q8NDM7 1665 aa6.44□□□□□ -1.38
MCF2-203ENST00000370576 MAP3K1Q13233 1512 aa6.44□□□□□ -1.38
MCF2-203ENST00000370576 LRRIQ1Q96JM4 1722 aa6.44□□□□□ -1.38
MCF2-203ENST00000370576 MRC2Q9UBG0 1479 aa6.43□□□□□ -1.38
MCF2-203ENST00000370576 PABPN1Q86U42 306 aaKnown RBP eCLIP6.43□□□□□ -1.38
MCF2-203ENST00000370576 POLA1P09884 1462 aaPredicted RBP6.42□□□□□ -1.38
MCF2-203ENST00000370576 CEP164Q9UPV0 1460 aa6.41□□□□□ -1.38
MCF2-203ENST00000370576 FGD5Q6ZNL6 1462 aa6.4□□□□□ -1.38
MCF2-203ENST00000370576 DCAF8L2P0C7V8 631 aa6.39□□□□□ -1.39
MCF2-203ENST00000370576 EIF4G3O43432 1585 aaKnown RBP6.39□□□□□ -1.39
MCF2-203ENST00000370576 EFCAB5A4FU69 1503 aa6.38□□□□□ -1.39
MCF2-203ENST00000370576 RUSC2Q8N2Y8 1516 aa6.38□□□□□ -1.39
MCF2-203ENST00000370576 PDS5BQ9NTI5 1447 aa6.38□□□□□ -1.39
MCF2-203ENST00000370576 NESP48681 1621 aa6.38□□□□□ -1.39
MCF2-203ENST00000370576 AQRO60306 1485 aaKnown RBP eCLIP6.36□□□□□ -1.39
MCF2-203ENST00000370576 IFT140Q96RY7 1462 aa6.36□□□□□ -1.39
MCF2-203ENST00000370576 ADCY10Q96PN6 1610 aa6.35□□□□□ -1.39
MCF2-203ENST00000370576 FOXD4L1Q9NU39 408 aa6.35□□□□□ -1.39
MCF2-203ENST00000370576 UGGT2Q9NYU1 1516 aa6.35□□□□□ -1.39
MCF2-203ENST00000370576 TNIKQ9UKE5 1360 aa6.35□□□□□ -1.39
MCF2-203ENST00000370576 CNKSR2Q8WXI2 1034 aa6.35□□□□□ -1.39
MCF2-203ENST00000370576 GOLGA3Q08378 1498 aa6.34□□□□□ -1.39
MCF2-203ENST00000370576 SAMD1Q6SPF0 538 aaPredicted RBP6.34□□□□□ -1.39
MCF2-203ENST00000370576 PPP4R3CPQ6ZMV5 832 aa6.34□□□□□ -1.4
MCF2-203ENST00000370576 NPM1P06748 294 aaKnown RBP eCLIP6.33□□□□□ -1.4
MCF2-203ENST00000370576 ARHGEF11O15085 1522 aa6.33□□□□□ -1.4
MCF2-203ENST00000370576 IGSF3O75054 1194 aa6.33□□□□□ -1.4
MCF2-203ENST00000370576 SOGA1O94964 1423 aa6.33□□□□□ -1.4
MCF2-203ENST00000370576 CLASP1Q7Z460 1538 aa6.32□□□□□ -1.4
MCF2-203ENST00000370576 PKD2Q13563 968 aa6.32□□□□□ -1.4
MCF2-203ENST00000370576 MAGI1Q96QZ7 1491 aaPredicted RBP6.31□□□□□ -1.4
MCF2-203ENST00000370576 SUPT5HO00267 1087 aaKnown RBP6.3□□□□□ -1.4
MCF2-203ENST00000370576 ARAP1Q96P48 1450 aa6.3□□□□□ -1.4
MCF2-203ENST00000370576 KIF27Q86VH2 1401 aa6.29□□□□□ -1.4
MCF2-203ENST00000370576 CHD1O14646 1710 aa6.29□□□□□ -1.4
MCF2-203ENST00000370576 IGF1RP08069 1367 aa6.29□□□□□ -1.4
MCF2-203ENST00000370576 BBXQ8WY36 941 aaPredicted RBP6.28□□□□□ -1.4
MCF2-203ENST00000370576 NUP160Q12769 1436 aa6.28□□□□□ -1.4
MCF2-203ENST00000370576 CEP170Q5SW79 1584 aa6.28□□□□□ -1.4
MCF2-203ENST00000370576 SNAPC4Q5SXM2 1469 aa6.28□□□□□ -1.4
MCF2-203ENST00000370576 RAPGEF2Q9Y4G8 1499 aa6.27□□□□□ -1.41
MCF2-203ENST00000370576 KIAA0556O60303 1618 aa6.26□□□□□ -1.41
MCF2-203ENST00000370576 GRIN2BQ13224 1484 aa6.25□□□□□ -1.41
MCF2-203ENST00000370576 TRHP20396 242 aaPredicted RBP6.25□□□□□ -1.41
MCF2-203ENST00000370576 IQGAP2Q13576 1575 aa6.24□□□□□ -1.41
MCF2-203ENST00000370576 ARHGAP35Q9NRY4 1499 aa6.24□□□□□ -1.41
MCF2-203ENST00000370576 FHAD1B1AJZ9 1412 aa6.24□□□□□ -1.41
MCF2-203ENST00000370576 GAPVD1Q14C86 1478 aa6.24□□□□□ -1.41
MCF2-203ENST00000370576 NECTIN2Q92692 538 aa6.23□□□□□ -1.41
MCF2-203ENST00000370576 CROCC2H7BZ55 1655 aa6.23□□□□□ -1.41
MCF2-203ENST00000370576 ABCA8O94911 1581 aa6.23□□□□□ -1.41
MCF2-203ENST00000370576 CHMP4AQ9BY43 222 aa6.23□□□□□ -1.41
MCF2-203ENST00000370576 TIAM1Q13009 1591 aa6.23□□□□□ -1.41
MCF2-203ENST00000370576 TSHZ2Q9NRE2 1034 aa6.22□□□□□ -1.41
MCF2-203ENST00000370576 FYCO1Q9BQS8 1478 aa6.22□□□□□ -1.41
MCF2-203ENST00000370576 RAD54L2Q9Y4B4 1467 aa6.22□□□□□ -1.41
MCF2-203ENST00000370576 KDM5BQ9UGL1 1544 aa6.22□□□□□ -1.41
MCF2-203ENST00000370576 SYNJ2O15056 1496 aa6.21□□□□□ -1.41
MCF2-203ENST00000370576 DISP1Q96F81 1524 aa6.21□□□□□ -1.41
MCF2-203ENST00000370576 PCF11O94913 1555 aaKnown RBP6.21□□□□□ -1.41
MCF2-203ENST00000370576 C1orf115Q9H7X2 142 aa6.21□□□□□ -1.42
MCF2-203ENST00000370576 GRIN2AQ12879 1464 aa6.2□□□□□ -1.42
MCF2-203ENST00000370576 CEP162Q5TB80 1403 aa6.2□□□□□ -1.42
MCF2-203ENST00000370576 BCORL1Q5H9F3 1711 aa6.19□□□□□ -1.42
MCF2-203ENST00000370576 VPS8Q8N3P4 1428 aa6.19□□□□□ -1.42
MCF2-203ENST00000370576 PUS7Q96PZ0 661 aaKnown RBP6.19□□□□□ -1.42
MCF2-203ENST00000370576 KIAA0586Q9BVV6 1533 aa6.19□□□□□ -1.42
MCF2-203ENST00000370576 BRPF1P55201 1214 aaPredicted RBP6.18□□□□□ -1.42
MCF2-203ENST00000370576 GCC2Q8IWJ2 1684 aa6.18□□□□□ -1.42
MCF2-203ENST00000370576 HECW1Q76N89 1606 aa6.18□□□□□ -1.42
MCF2-203ENST00000370576 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.18□□□□□ -1.42
MCF2-203ENST00000370576 RGS22Q8NE09 1264 aa6.18□□□□□ -1.42
MCF2-203ENST00000370576 ZNF608Q9ULD9 1512 aaPredicted RBP6.18□□□□□ -1.42
MCF2-203ENST00000370576 PDIA4P13667 645 aaKnown RBP6.17□□□□□ -1.42
MCF2-203ENST00000370576 RAPGEF6Q8TEU7 1601 aa6.17□□□□□ -1.42
MCF2-203ENST00000370576 UHRF1BP1LA0JNW5 1464 aa6.17□□□□□ -1.42
MCF2-203ENST00000370576 UBE2Q2Q8WVN8 375 aa6.17□□□□□ -1.42
MCF2-203ENST00000370576 TCOF1Q13428 1488 aaKnown RBP6.16□□□□□ -1.42
MCF2-203ENST00000370576 CASKIN1Q8WXD9 1431 aa6.16□□□□□ -1.42
MCF2-203ENST00000370576 ATXN8OSP0DMR3 200 aa6.16□□□□□ -1.42
MCF2-203ENST00000370576 ARAP3Q8WWN8 1544 aa6.15□□□□□ -1.42
MCF2-203ENST00000370576 PROM2Q8N271 834 aa6.15□□□□□ -1.43
MCF2-203ENST00000370576 RRBP1Q9P2E9 1410 aaKnown RBP6.15□□□□□ -1.43
MCF2-203ENST00000370576 CLIP1P30622 1438 aa6.14□□□□□ -1.43
MCF2-203ENST00000370576 ADGBQ8N7X0 1667 aa6.14□□□□□ -1.43
MCF2-203ENST00000370576 MAST1Q9Y2H9 1570 aa6.14□□□□□ -1.43
MCF2-203ENST00000370576 ITSN2Q9NZM3 1697 aa6.13□□□□□ -1.43
MCF2-203ENST00000370576 CDC42BPAQ5VT25 1732 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms