RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 NISCHQ9Y2I1 1504 aa9.24□□□□□ -0.93
MCF2-203ENST00000370576 SLC24A1O60721 1099 aa8.55□□□□□ -1.04
MCF2-203ENST00000370576 CCDC180Q9P1Z9 1646 aa8.43□□□□□ -1.06
MCF2-203ENST00000370576 CHIC1Q5VXU3 224 aa8.35□□□□□ -1.07
MCF2-203ENST00000370576 DCAF1Q9Y4B6 1507 aa8□□□□□ -1.13
MCF2-203ENST00000370576 MYO15BQ96JP2 1530 aa7.96□□□□□ -1.14
MCF2-203ENST00000370576 ZCCHC6Q5VYS8 1495 aaKnown RBP7.87□□□□□ -1.15
MCF2-203ENST00000370576 AEBP2Q6ZN18 517 aaPredicted RBP7.8□□□□□ -1.16
MCF2-203ENST00000370576 PLPPR3Q6T4P5 718 aa7.78□□□□□ -1.16
MCF2-203ENST00000370576 DAXXQ9UER7 740 aaPredicted RBP7.77□□□□□ -1.17
MCF2-203ENST00000370576 NCBP3Q53F19 620 aaKnown RBP7.74□□□□□ -1.17
MCF2-203ENST00000370576 RTN4Q9NQC3 1192 aaKnown RBP7.7□□□□□ -1.18
MCF2-203ENST00000370576 EHMT2Q96KQ7 1210 aa7.67□□□□□ -1.18
MCF2-203ENST00000370576 PHF23Q9BUL5 403 aaPredicted RBP7.64□□□□□ -1.19
MCF2-203ENST00000370576 NACADO15069 1562 aa7.61□□□□□ -1.19
MCF2-203ENST00000370576 UNC13AQ9UPW8 1703 aa7.59□□□□□ -1.19
MCF2-203ENST00000370576 CSRNP3Q8WYN3 585 aa7.55□□□□□ -1.2
MCF2-203ENST00000370576 KCNA4P22459 653 aa7.55□□□□□ -1.2
MCF2-203ENST00000370576 AMER1Q5JTC6 1135 aaPredicted RBP7.54□□□□□ -1.2
MCF2-203ENST00000370576 SHROOM4Q9ULL8 1493 aa7.5□□□□□ -1.21
MCF2-203ENST00000370576 APLP2Q06481 763 aa7.47□□□□□ -1.21
MCF2-203ENST00000370576 RB1CC1Q8TDY2 1594 aa7.42□□□□□ -1.22
MCF2-203ENST00000370576 ABCC9O60706 1549 aa7.41□□□□□ -1.22
MCF2-203ENST00000370576 ARXQ96QS3 562 aa7.37□□□□□ -1.23
MCF2-203ENST00000370576 BICRAQ9NZM4 1560 aa7.37□□□□□ -1.23
MCF2-203ENST00000370576 PEG3Q9GZU2 1588 aa7.35□□□□□ -1.23
MCF2-203ENST00000370576 PRKCSHP14314 528 aaPredicted RBP7.29□□□□□ -1.24
MCF2-203ENST00000370576 TIMELESSQ9UNS1 1208 aa7.26□□□□□ -1.25
MCF2-203ENST00000370576 EIF4G1Q04637 1599 aaKnown RBP7.25□□□□□ -1.25
MCF2-203ENST00000370576 BAZ1AQ9NRL2 1556 aaPredicted RBP7.18□□□□□ -1.26
MCF2-203ENST00000370576 SCRIBQ14160 1630 aa7.17□□□□□ -1.26
MCF2-203ENST00000370576 TTBK1Q5TCY1 1321 aaPredicted RBP7.17□□□□□ -1.26
MCF2-203ENST00000370576 PRDM2Q13029 1718 aa7.17□□□□□ -1.26
MCF2-203ENST00000370576 SMARCA4P51532 1647 aa7.16□□□□□ -1.26
MCF2-203ENST00000370576 TAOK2Q9UL54 1235 aa7.15□□□□□ -1.26
MCF2-203ENST00000370576 SMARCA2P51531 1590 aa7.14□□□□□ -1.27
MCF2-203ENST00000370576 HMGXB3Q12766 1538 aa7.07□□□□□ -1.28
MCF2-203ENST00000370576 TOP2AP11388 1531 aaKnown RBP7.06□□□□□ -1.28
MCF2-203ENST00000370576 MROH2BQ7Z745 1585 aa7.02□□□□□ -1.29
MCF2-203ENST00000370576 RSF1Q96T23 1441 aaPredicted RBP7.02□□□□□ -1.29
MCF2-203ENST00000370576 WIZO95785 1651 aa7□□□□□ -1.29
MCF2-203ENST00000370576 ZBTB22O15209 634 aa6.98□□□□□ -1.29
MCF2-203ENST00000370576 TULP1O00294 542 aaPredicted RBP6.97□□□□□ -1.29
MCF2-203ENST00000370576 PLCB2Q00722 1185 aa6.96□□□□□ -1.29
MCF2-203ENST00000370576 PELP1Q8IZL8 1130 aaKnown RBP6.96□□□□□ -1.29
MCF2-203ENST00000370576 HOMEZQ8IX15 550 aa6.96□□□□□ -1.3
MCF2-203ENST00000370576 BCANQ96GW7 911 aa6.96□□□□□ -1.3
MCF2-203ENST00000370576 CECR2Q9BXF3 1484 aa6.95□□□□□ -1.3
MCF2-203ENST00000370576 SLC4A1APQ9BWU0 796 aaKnown RBP6.93□□□□□ -1.3
MCF2-203ENST00000370576 NCAPD3P42695 1498 aa6.93□□□□□ -1.3
MCF2-203ENST00000370576 KLHL34Q8N239 644 aa6.92□□□□□ -1.3
MCF2-203ENST00000370576 BIVM-ERCC5R4GMW8 1640 aa6.91□□□□□ -1.3
MCF2-203ENST00000370576 ATAD2BQ9ULI0 1458 aa6.89□□□□□ -1.31
MCF2-203ENST00000370576 MYT1Q01538 1121 aa6.88□□□□□ -1.31
MCF2-203ENST00000370576 TPRNQ4KMQ1 711 aa6.87□□□□□ -1.31
MCF2-203ENST00000370576 GTF3C3Q9Y5Q9 886 aa6.87□□□□□ -1.31
MCF2-203ENST00000370576 ERICH6Q7L0X2 663 aa6.85□□□□□ -1.31
MCF2-203ENST00000370576 WDR97A6NE52 1622 aa6.85□□□□□ -1.31
MCF2-203ENST00000370576 CC2D2AQ9P2K1 1620 aa6.81□□□□□ -1.32
MCF2-203ENST00000370576 TMEM132AQ24JP5 1023 aa6.8□□□□□ -1.32
MCF2-203ENST00000370576 CCDC88BA6NC98 1476 aa6.78□□□□□ -1.32
MCF2-203ENST00000370576 VSIG10Q8N0Z9 540 aa6.77□□□□□ -1.33
MCF2-203ENST00000370576 TOP2BQ02880 1626 aa6.77□□□□□ -1.33
MCF2-203ENST00000370576 LAMC3Q9Y6N6 1575 aa6.75□□□□□ -1.33
MCF2-203ENST00000370576 KDM2AQ9Y2K7 1162 aa6.75□□□□□ -1.33
MCF2-203ENST00000370576 CFTRP13569 1480 aa6.74□□□□□ -1.33
MCF2-203ENST00000370576 DNAJC5BQ9UF47 199 aa6.74□□□□□ -1.33
MCF2-203ENST00000370576 ADRA2BP18089 450 aa6.72□□□□□ -1.33
MCF2-203ENST00000370576 BAZ1BQ9UIG0 1483 aaKnown RBP6.71□□□□□ -1.34
MCF2-203ENST00000370576 PODXL2Q9NZ53 605 aa6.69□□□□□ -1.34
MCF2-203ENST00000370576 HRCP23327 699 aa6.68□□□□□ -1.34
MCF2-203ENST00000370576 KIF21BO75037 1637 aa6.68□□□□□ -1.34
MCF2-203ENST00000370576 SYNJ1O43426 1573 aa6.68□□□□□ -1.34
MCF2-203ENST00000370576 RANGAP1P46060 587 aaPredicted RBP6.66□□□□□ -1.34
MCF2-203ENST00000370576 FBXO3Q9UK99 471 aa6.65□□□□□ -1.34
MCF2-203ENST00000370576 THOC2Q8NI27 1593 aaKnown RBP6.65□□□□□ -1.35
MCF2-203ENST00000370576 ABCA5Q8WWZ7 1642 aa6.64□□□□□ -1.35
MCF2-203ENST00000370576 KIF21AQ7Z4S6 1674 aa6.64□□□□□ -1.35
MCF2-203ENST00000370576 DNMBPQ6XZF7 1577 aa6.63□□□□□ -1.35
MCF2-203ENST00000370576 TARBP1Q13395 1621 aaKnown RBP6.63□□□□□ -1.35
MCF2-203ENST00000370576 CUX1P39880 1505 aa6.61□□□□□ -1.35
MCF2-203ENST00000370576 WDR62O43379 1518 aa6.61□□□□□ -1.35
MCF2-203ENST00000370576 TRIM26Q12899 539 aaPredicted RBP6.61□□□□□ -1.35
MCF2-203ENST00000370576 HAP1P54257 671 aaPredicted RBP6.61□□□□□ -1.35
MCF2-203ENST00000370576 NPM2Q86SE8 214 aaKnown RBP6.61□□□□□ -1.35
MCF2-203ENST00000370576 ERICH3Q5RHP9 1530 aa6.6□□□□□ -1.35
MCF2-203ENST00000370576 LOC105371045A0A1W2PR82 267 aa6.6□□□□□ -1.35
MCF2-203ENST00000370576 NPM3O75607 178 aaKnown RBP6.58□□□□□ -1.36
MCF2-203ENST00000370576 DNAJC5Q9H3Z4 198 aa6.58□□□□□ -1.36
MCF2-203ENST00000370576 EEA1Q15075 1411 aa6.58□□□□□ -1.36
MCF2-203ENST00000370576 EIF5BO60841 1220 aaKnown RBP6.57□□□□□ -1.36
MCF2-203ENST00000370576 CUL7Q14999 1698 aa6.57□□□□□ -1.36
MCF2-203ENST00000370576 ABCC8Q09428 1581 aa6.57□□□□□ -1.36
MCF2-203ENST00000370576 PBRM1Q86U86 1689 aa6.57□□□□□ -1.36
MCF2-203ENST00000370576 FBLN2P98095 1184 aa6.56□□□□□ -1.36
MCF2-203ENST00000370576 PPP6R1Q9UPN7 881 aa6.54□□□□□ -1.36
MCF2-203ENST00000370576 CTTNBP2Q8WZ74 1663 aa6.54□□□□□ -1.36
MCF2-203ENST00000370576 ABCA10Q8WWZ4 1543 aa6.54□□□□□ -1.36
MCF2-203ENST00000370576 CADPSQ9ULU8 1353 aa6.52□□□□□ -1.37
MCF2-203ENST00000370576 PRXQ9BXM0 1461 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms