RNA–Protein interactions for RNA: ENST00000352393.8

CPNE1-202, Transcript of copine 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE1, Length 2,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-202ENST00000352393 FHAD1B1AJZ9 1412 aa35.65■■■■□ 3.3
CPNE1-202ENST00000352393 ITGAEP38570 1179 aa35.61■■■■□ 3.29
CPNE1-202ENST00000352393 PHLDB1Q86UU1 1377 aa35.6■■■■□ 3.29
CPNE1-202ENST00000352393 SETD5Q9C0A6 1442 aa35.58■■■■□ 3.29
CPNE1-202ENST00000352393 FANCD2Q9BXW9 1451 aa35.55■■■■□ 3.28
CPNE1-202ENST00000352393 DNMBPQ6XZF7 1577 aa35.55■■■■□ 3.28
CPNE1-202ENST00000352393 EFCAB5A4FU69 1503 aa35.5■■■■□ 3.27
CPNE1-202ENST00000352393 ABCA10Q8WWZ4 1543 aa35.5■■■■□ 3.27
CPNE1-202ENST00000352393 FYCO1Q9BQS8 1478 aa35.47■■■■□ 3.27
CPNE1-202ENST00000352393 CUL7Q14999 1698 aa35.45■■■■□ 3.27
CPNE1-202ENST00000352393 CTTNBP2Q8WZ74 1663 aa35.44■■■■□ 3.26
CPNE1-202ENST00000352393 AQRO60306 1485 aaKnown RBP eCLIP35.42■■■■□ 3.263e-7■■■■■ 27
CPNE1-202ENST00000352393 POLA1P09884 1462 aaPredicted RBP35.4■■■■□ 3.26
CPNE1-202ENST00000352393 TOPBP1Q92547 1522 aa35.4■■■■□ 3.26
CPNE1-202ENST00000352393 FHOD3Q2V2M9 1422 aa35.39■■■■□ 3.26
CPNE1-202ENST00000352393 RAD54L2Q9Y4B4 1467 aa35.39■■■■□ 3.26
CPNE1-202ENST00000352393 CASKIN1Q8WXD9 1431 aa35.37■■■■□ 3.25
CPNE1-202ENST00000352393 WDR97A6NE52 1622 aa35.35■■■■□ 3.25
CPNE1-202ENST00000352393 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.33■■■■□ 3.257e-10■■□□□ 13.2
CPNE1-202ENST00000352393 FAM50AQ14320 339 aaKnown RBP35.32■■■■□ 3.24
CPNE1-202ENST00000352393 P3H3Q8IVL6 736 aa35.29■■■■□ 3.24
CPNE1-202ENST00000352393 SUPT16HQ9Y5B9 1047 aaKnown RBP35.24■■■■□ 3.23
CPNE1-202ENST00000352393 MYT1Q01538 1121 aa35.23■■■■□ 3.23
CPNE1-202ENST00000352393 SNAPC4Q5SXM2 1469 aa35.21■■■■□ 3.23
CPNE1-202ENST00000352393 TIMELESSQ9UNS1 1208 aa35.2■■■■□ 3.23
CPNE1-202ENST00000352393 SIN3AQ96ST3 1273 aa35.18■■■■□ 3.22
CPNE1-202ENST00000352393 FMN1Q68DA7 1419 aa35.18■■■■□ 3.22
CPNE1-202ENST00000352393 NESP48681 1621 aa35.18■■■■□ 3.22
CPNE1-202ENST00000352393 FGD6Q6ZV73 1430 aa35.15■■■■□ 3.22
CPNE1-202ENST00000352393 SAMD9Q5K651 1589 aa35.15■■■■□ 3.22
CPNE1-202ENST00000352393 ATP1B4Q9UN42 357 aaPredicted RBP35.14■■■■□ 3.22
CPNE1-202ENST00000352393 LAMC3Q9Y6N6 1575 aa35.12■■■■□ 3.21
CPNE1-202ENST00000352393 ABCA5Q8WWZ7 1642 aa35.11■■■■□ 3.21
CPNE1-202ENST00000352393 LRRIQ1Q96JM4 1722 aa35.1■■■■□ 3.21
CPNE1-202ENST00000352393 URB2Q14146 1524 aaKnown RBP35.07■■■■□ 3.2
CPNE1-202ENST00000352393 KCNH8Q96L42 1107 aa35.06■■■■□ 3.2
CPNE1-202ENST00000352393 THOC2Q8NI27 1593 aaKnown RBP35.03■■■■□ 3.2
CPNE1-202ENST00000352393 CCDC18Q5T9S5 1454 aa35.01■■■■□ 3.2
CPNE1-202ENST00000352393 PPP1R15AO75807 674 aaPredicted RBP35■■■■□ 3.19
CPNE1-202ENST00000352393 PTPN23Q9H3S7 1636 aa35■■■■□ 3.19
CPNE1-202ENST00000352393 HFM1A2PYH4 1435 aa34.99■■■■□ 3.19
CPNE1-202ENST00000352393 GRIN2BQ13224 1484 aa34.98■■■■□ 3.19
CPNE1-202ENST00000352393 DDX10Q13206 875 aaKnown RBP34.97■■■■□ 3.19
CPNE1-202ENST00000352393 MTUS2Q5JR59 1369 aa34.96■■■■□ 3.19
CPNE1-202ENST00000352393 KIF21AQ7Z4S6 1674 aa34.95■■■■□ 3.19
CPNE1-202ENST00000352393 PTPRKQ15262 1439 aa34.94■■■■□ 3.18
CPNE1-202ENST00000352393 UACAQ9BZF9 1416 aa34.93■■■■□ 3.18
CPNE1-202ENST00000352393 SUPT6HQ7KZ85 1726 aaKnown RBP34.92■■■■□ 3.18
CPNE1-202ENST00000352393 NCOA2Q15596 1464 aa34.92■■■■□ 3.18
CPNE1-202ENST00000352393 EHBP1L1Q8N3D4 1523 aa34.9■■■■□ 3.18
CPNE1-202ENST00000352393 GAPVD1Q14C86 1478 aa34.9■■■■□ 3.18
CPNE1-202ENST00000352393 MYOM3Q5VTT5 1437 aa34.89■■■■□ 3.18
CPNE1-202ENST00000352393 PDS5BQ9NTI5 1447 aa34.85■■■■□ 3.17
CPNE1-202ENST00000352393 TDRD9Q8NDG6 1382 aaKnown RBP34.84■■■■□ 3.17
CPNE1-202ENST00000352393 NAIPQ13075 1403 aa34.84■■■■□ 3.17
CPNE1-202ENST00000352393 ARHGEF11O15085 1522 aa34.82■■■■□ 3.17
CPNE1-202ENST00000352393 TONSLQ96HA7 1378 aa34.82■■■■□ 3.17
CPNE1-202ENST00000352393 UGGT2Q9NYU1 1516 aa34.81■■■■□ 3.16
CPNE1-202ENST00000352393 CCER2I3L3R5 266 aa34.78■■■■□ 3.16
CPNE1-202ENST00000352393 KDM5BQ9UGL1 1544 aa34.75■■■■□ 3.15
CPNE1-202ENST00000352393 DNAJC5BQ9UF47 199 aa34.74■■■■□ 3.15
CPNE1-202ENST00000352393 MAGI3Q5TCQ9 1506 aa34.74■■■■□ 3.15
CPNE1-202ENST00000352393 GCC2Q8IWJ2 1684 aa34.73■■■■□ 3.15
CPNE1-202ENST00000352393 TARBP1Q13395 1621 aaKnown RBP34.73■■■■□ 3.15
CPNE1-202ENST00000352393 HIRIP3Q9BW71 556 aaPredicted RBP34.73■■■■□ 3.15
CPNE1-202ENST00000352393 TSHZ2Q9NRE2 1034 aa34.7■■■■□ 3.15
CPNE1-202ENST00000352393 TCOF1Q13428 1488 aaKnown RBP34.69■■■■□ 3.14
CPNE1-202ENST00000352393 ANP32CO43423 234 aa34.67■■■■□ 3.14
CPNE1-202ENST00000352393 HECW1Q76N89 1606 aa34.67■■■■□ 3.14
CPNE1-202ENST00000352393 PBRM1Q86U86 1689 aa34.64■■■■□ 3.14
CPNE1-202ENST00000352393 AKNAQ7Z591 1439 aa34.6■■■■□ 3.13
CPNE1-202ENST00000352393 IQGAP2Q13576 1575 aa34.56■■■■□ 3.12
CPNE1-202ENST00000352393 DENND4BO75064 1496 aaPredicted RBP34.54■■■■□ 3.12
CPNE1-202ENST00000352393 FKBP8Q14318 412 aa34.54■■■■□ 3.12
CPNE1-202ENST00000352393 ADAMTS12P58397 1594 aa34.52■■■■□ 3.12
CPNE1-202ENST00000352393 EPRSP07814 1512 aaKnown RBP34.51■■■■□ 3.12
CPNE1-202ENST00000352393 KDM6BO15054 1643 aa34.49■■■■□ 3.11
CPNE1-202ENST00000352393 WDR62O43379 1518 aa34.48■■■■□ 3.11
CPNE1-202ENST00000352393 BCANQ96GW7 911 aa34.46■■■■□ 3.11
CPNE1-202ENST00000352393 MIA2Q96PC5 1412 aa34.45■■■■□ 3.11
CPNE1-202ENST00000352393 TRIM52Q96A61 297 aa34.44■■■■□ 3.1
CPNE1-202ENST00000352393 CDK13Q14004 1512 aaKnown RBP34.42■■■■□ 3.1
CPNE1-202ENST00000352393 RRP7BPQ9NSQ0 103 aa34.41■■■■□ 3.1
CPNE1-202ENST00000352393 NEFLP07196 543 aa34.39■■■■□ 3.1
CPNE1-202ENST00000352393 MRC2Q9UBG0 1479 aa34.35■■■■□ 3.09
CPNE1-202ENST00000352393 CHIC2Q9UKJ5 165 aa34.34■■■■□ 3.09
CPNE1-202ENST00000352393 WASHC2AQ641Q2 1341 aa34.29■■■■□ 3.08
CPNE1-202ENST00000352393 HSPA5P11021 654 aaKnown RBP34.28■■■■□ 3.08
CPNE1-202ENST00000352393 DNMT1P26358 1616 aaKnown RBP34.25■■■■□ 3.07
CPNE1-202ENST00000352393 MPHOSPH9Q99550 1183 aa34.23■■■■□ 3.07
CPNE1-202ENST00000352393 ROCK1Q13464 1354 aa34.22■■■■□ 3.07
CPNE1-202ENST00000352393 DAPK1P53355 1430 aa34.21■■■■□ 3.07
CPNE1-202ENST00000352393 KIAA0556O60303 1618 aa34.21■■■■□ 3.07
CPNE1-202ENST00000352393 CNTLNQ9NXG0 1405 aa34.2■■■■□ 3.07
CPNE1-202ENST00000352393 EIF4G2P78344 907 aaKnown RBP eCLIP34.18■■■■□ 3.06
CPNE1-202ENST00000352393 RPRD2Q5VT52 1461 aaKnown RBP34.15■■■■□ 3.06
CPNE1-202ENST00000352393 TEX14Q8IWB6 1497 aa34.14■■■■□ 3.06
CPNE1-202ENST00000352393 DISP1Q96F81 1524 aa34.14■■■■□ 3.06
CPNE1-202ENST00000352393 NCOA1Q15788 1441 aa34.14■■■■□ 3.06
CPNE1-202ENST00000352393 L3MBTL2Q969R5 705 aa34.13■■■■□ 3.05
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms