RNA–Protein interactions for RNA: ENST00000349124.2

PTP4A3-202, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

TSL 1 (best) BASIC

Gene PTP4A3, Length 2,710 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-202ENST00000349124 LRRC9Q6ZRR7 1453 aa26.18■■□□□ 1.78
PTP4A3-202ENST00000349124 RAD54L2Q9Y4B4 1467 aa26.16■■□□□ 1.78
PTP4A3-202ENST00000349124 MAPKBP1O60336 1514 aa26.15■■□□□ 1.78
PTP4A3-202ENST00000349124 SETD5Q9C0A6 1442 aa26.14■■□□□ 1.78
PTP4A3-202ENST00000349124 FHOD3Q2V2M9 1422 aa26.11■■□□□ 1.77
PTP4A3-202ENST00000349124 FANCD2Q9BXW9 1451 aa26.11■■□□□ 1.77
PTP4A3-202ENST00000349124 MAP3K1Q13233 1512 aa26.06■■□□□ 1.76
PTP4A3-202ENST00000349124 PRDM2Q13029 1718 aa26.06■■□□□ 1.76
PTP4A3-202ENST00000349124 HIRIP3Q9BW71 556 aaPredicted RBP26.06■■□□□ 1.76
PTP4A3-202ENST00000349124 FHAD1B1AJZ9 1412 aa26.04■■□□□ 1.76
PTP4A3-202ENST00000349124 CC2D2AQ9P2K1 1620 aa26.04■■□□□ 1.76
PTP4A3-202ENST00000349124 NESP48681 1621 aa26.02■■□□□ 1.76
PTP4A3-202ENST00000349124 DDX10Q13206 875 aaKnown RBP26.02■■□□□ 1.76
PTP4A3-202ENST00000349124 SUPT16HQ9Y5B9 1047 aaKnown RBP26.02■■□□□ 1.76
PTP4A3-202ENST00000349124 PCF11O94913 1555 aaKnown RBP26.01■■□□□ 1.75
PTP4A3-202ENST00000349124 POLA1P09884 1462 aaPredicted RBP25.97■■□□□ 1.75
PTP4A3-202ENST00000349124 WDR97A6NE52 1622 aa25.96■■□□□ 1.75
PTP4A3-202ENST00000349124 TOPBP1Q92547 1522 aa25.93■■□□□ 1.74
PTP4A3-202ENST00000349124 ABCA10Q8WWZ4 1543 aa25.91■■□□□ 1.74
PTP4A3-202ENST00000349124 TDRD9Q8NDG6 1382 aaKnown RBP25.88■■□□□ 1.73
PTP4A3-202ENST00000349124 DNMBPQ6XZF7 1577 aa25.87■■□□□ 1.73
PTP4A3-202ENST00000349124 CASKIN1Q8WXD9 1431 aa25.86■■□□□ 1.73
PTP4A3-202ENST00000349124 PPP1R15AO75807 674 aaPredicted RBP25.86■■□□□ 1.73
PTP4A3-202ENST00000349124 DNAJC5BQ9UF47 199 aa25.85■■□□□ 1.73
PTP4A3-202ENST00000349124 CFAP43Q8NDM7 1665 aa25.83■■□□□ 1.73
PTP4A3-202ENST00000349124 FYCO1Q9BQS8 1478 aa25.82■■□□□ 1.72
PTP4A3-202ENST00000349124 PTPRKQ15262 1439 aa25.79■■□□□ 1.72
PTP4A3-202ENST00000349124 MTUS2Q5JR59 1369 aa25.78■■□□□ 1.72
PTP4A3-202ENST00000349124 FGD6Q6ZV73 1430 aa25.77■■□□□ 1.72
PTP4A3-202ENST00000349124 URB2Q14146 1524 aaKnown RBP25.74■■□□□ 1.71
PTP4A3-202ENST00000349124 EFCAB5A4FU69 1503 aa25.74■■□□□ 1.71
PTP4A3-202ENST00000349124 TIMELESSQ9UNS1 1208 aa25.73■■□□□ 1.71
PTP4A3-202ENST00000349124 FMN1Q68DA7 1419 aa25.73■■□□□ 1.71
PTP4A3-202ENST00000349124 BCANQ96GW7 911 aa25.73■■□□□ 1.71
PTP4A3-202ENST00000349124 AQRO60306 1485 aaKnown RBP eCLIP25.73■■□□□ 1.714e-7■■■■□ 23.2
PTP4A3-202ENST00000349124 SNAPC4Q5SXM2 1469 aa25.71■■□□□ 1.71
PTP4A3-202ENST00000349124 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.71■■□□□ 1.716e-7■■■■□ 21.6
PTP4A3-202ENST00000349124 TRIM52Q96A61 297 aa25.67■■□□□ 1.7
PTP4A3-202ENST00000349124 TONSLQ96HA7 1378 aa25.66■■□□□ 1.7
PTP4A3-202ENST00000349124 CHIC2Q9UKJ5 165 aa25.66■■□□□ 1.7
PTP4A3-202ENST00000349124 CUL7Q14999 1698 aa25.65■■□□□ 1.7
PTP4A3-202ENST00000349124 CCDC18Q5T9S5 1454 aa25.65■■□□□ 1.7
PTP4A3-202ENST00000349124 RRP7BPQ9NSQ0 103 aa25.64■■□□□ 1.7
PTP4A3-202ENST00000349124 ARID3CA6NKF2 412 aa25.64■■□□□ 1.69
PTP4A3-202ENST00000349124 TSHZ2Q9NRE2 1034 aa25.63■■□□□ 1.69
PTP4A3-202ENST00000349124 GAPVD1Q14C86 1478 aa25.63■■□□□ 1.69
PTP4A3-202ENST00000349124 FKBP8Q14318 412 aa25.62■■□□□ 1.69
PTP4A3-202ENST00000349124 CTTNBP2Q8WZ74 1663 aa25.61■■□□□ 1.69
PTP4A3-202ENST00000349124 NCOA2Q15596 1464 aa25.61■■□□□ 1.69
PTP4A3-202ENST00000349124 ANP32CO43423 234 aa25.61■■□□□ 1.69
PTP4A3-202ENST00000349124 HFM1A2PYH4 1435 aa25.6■■□□□ 1.69
PTP4A3-202ENST00000349124 NAIPQ13075 1403 aa25.59■■□□□ 1.69
PTP4A3-202ENST00000349124 UACAQ9BZF9 1416 aa25.57■■□□□ 1.68
PTP4A3-202ENST00000349124 MYOM3Q5VTT5 1437 aa25.56■■□□□ 1.68
PTP4A3-202ENST00000349124 GRIN2BQ13224 1484 aa25.55■■□□□ 1.68
PTP4A3-202ENST00000349124 LRRIQ1Q96JM4 1722 aa25.52■■□□□ 1.68
PTP4A3-202ENST00000349124 PTPN23Q9H3S7 1636 aa25.51■■□□□ 1.67
PTP4A3-202ENST00000349124 CCER2I3L3R5 266 aa25.5■■□□□ 1.67
PTP4A3-202ENST00000349124 SAMD9Q5K651 1589 aa25.5■■□□□ 1.67
PTP4A3-202ENST00000349124 ABCA5Q8WWZ7 1642 aa25.49■■□□□ 1.67
PTP4A3-202ENST00000349124 MAGI3Q5TCQ9 1506 aa25.49■■□□□ 1.67
PTP4A3-202ENST00000349124 LAMC3Q9Y6N6 1575 aa25.48■■□□□ 1.67
PTP4A3-202ENST00000349124 PDS5BQ9NTI5 1447 aa25.47■■□□□ 1.67
PTP4A3-202ENST00000349124 FOXD1Q16676 465 aa25.46■■□□□ 1.67
PTP4A3-202ENST00000349124 MYT1Q01538 1121 aa25.43■■□□□ 1.66
PTP4A3-202ENST00000349124 HSPA5P11021 654 aaKnown RBP25.39■■□□□ 1.66
PTP4A3-202ENST00000349124 KDM5BQ9UGL1 1544 aa25.38■■□□□ 1.65
PTP4A3-202ENST00000349124 UGGT2Q9NYU1 1516 aa25.38■■□□□ 1.65
PTP4A3-202ENST00000349124 SUPT6HQ7KZ85 1726 aaKnown RBP25.37■■□□□ 1.65
PTP4A3-202ENST00000349124 EHBP1L1Q8N3D4 1523 aa25.37■■□□□ 1.65
PTP4A3-202ENST00000349124 DENND4BO75064 1496 aaPredicted RBP25.37■■□□□ 1.65
PTP4A3-202ENST00000349124 WASHC2AQ641Q2 1341 aa25.35■■□□□ 1.65
PTP4A3-202ENST00000349124 MPHOSPH9Q99550 1183 aa25.35■■□□□ 1.65
PTP4A3-202ENST00000349124 NEFLP07196 543 aa25.33■■□□□ 1.65
PTP4A3-202ENST00000349124 CDK13Q14004 1512 aaKnown RBP25.33■■□□□ 1.65
PTP4A3-202ENST00000349124 ARHGEF11O15085 1522 aa25.33■■□□□ 1.64
PTP4A3-202ENST00000349124 L3MBTL2Q969R5 705 aa25.32■■□□□ 1.64
PTP4A3-202ENST00000349124 KDM6BO15054 1643 aa25.32■■□□□ 1.64
PTP4A3-202ENST00000349124 TARBP1Q13395 1621 aaKnown RBP25.3■■□□□ 1.64
PTP4A3-202ENST00000349124 KIF21AQ7Z4S6 1674 aa25.3■■□□□ 1.64
PTP4A3-202ENST00000349124 EPRSP07814 1512 aaKnown RBP25.29■■□□□ 1.64
PTP4A3-202ENST00000349124 HNRNPUQ00839 825 aaKnown RBP eCLIP25.29■■□□□ 1.64
PTP4A3-202ENST00000349124 ZNF644Q9H582 1327 aaPredicted RBP25.29■■□□□ 1.64
PTP4A3-202ENST00000349124 C11orf95C9JLR9 678 aaPredicted RBP25.28■■□□□ 1.64
PTP4A3-202ENST00000349124 THOC2Q8NI27 1593 aaKnown RBP25.28■■□□□ 1.64
PTP4A3-202ENST00000349124 CCDC184Q52MB2 194 aa25.27■■□□□ 1.64
PTP4A3-202ENST00000349124 TCOF1Q13428 1488 aaKnown RBP25.25■■□□□ 1.63
PTP4A3-202ENST00000349124 EIF4G2P78344 907 aaKnown RBP eCLIP25.24■■□□□ 1.63
PTP4A3-202ENST00000349124 IRX6P78412 446 aaPredicted RBP25.24■■□□□ 1.63
PTP4A3-202ENST00000349124 NBPF8Q3BBV2 869 aa25.21■■□□□ 1.63
PTP4A3-202ENST00000349124 IQGAP2Q13576 1575 aa25.2■■□□□ 1.62
PTP4A3-202ENST00000349124 HECW1Q76N89 1606 aa25.17■■□□□ 1.62
PTP4A3-202ENST00000349124 ZNF608Q9ULD9 1512 aaPredicted RBP25.15■■□□□ 1.62
PTP4A3-202ENST00000349124 MIA2Q96PC5 1412 aa25.15■■□□□ 1.62
PTP4A3-202ENST00000349124 RBM19Q9Y4C8 960 aaKnown RBP25.14■■□□□ 1.61
PTP4A3-202ENST00000349124 SLC4A1APQ9BWU0 796 aaKnown RBP25.13■■□□□ 1.61
PTP4A3-202ENST00000349124 WDR62O43379 1518 aa25.12■■□□□ 1.61
PTP4A3-202ENST00000349124 ANKRD30BQ9BXX2 1392 aa25.1■■□□□ 1.61
PTP4A3-202ENST00000349124 ABCC5O15440 1437 aa25.1■■□□□ 1.61
PTP4A3-202ENST00000349124 AKNAQ7Z591 1439 aa25.1■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms