RNA–Protein interactions for RNA: ENST00000340840.6

TRERF1-201, Transcript of transcriptional regulating factor 1, humanhuman

TSL 5 BASIC

Gene TRERF1, Length 4,174 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1-201ENST00000340840 SIN3AQ96ST3 1273 aa13.18□□□□□ -0.3
TRERF1-201ENST00000340840 ANP32EQ9BTT0 268 aa13.18□□□□□ -0.3
TRERF1-201ENST00000340840 TSHZ2Q9NRE2 1034 aa13.18□□□□□ -0.3
TRERF1-201ENST00000340840 FHAD1B1AJZ9 1412 aa13.17□□□□□ -0.3
TRERF1-201ENST00000340840 TRIM52Q96A61 297 aa13.17□□□□□ -0.3
TRERF1-201ENST00000340840 CUX2O14529 1486 aa13.17□□□□□ -0.3
TRERF1-201ENST00000340840 MYT1LQ9UL68 1186 aa13.16□□□□□ -0.3
TRERF1-201ENST00000340840 CC2D2AQ9P2K1 1620 aa13.15□□□□□ -0.3
TRERF1-201ENST00000340840 CARMIL1Q5VZK9 1371 aa13.15□□□□□ -0.3
TRERF1-201ENST00000340840 NCAPD3P42695 1498 aa13.15□□□□□ -0.3
TRERF1-201ENST00000340840 PDS5BQ9NTI5 1447 aa13.15□□□□□ -0.31
TRERF1-201ENST00000340840 HIRIP3Q9BW71 556 aaPredicted RBP13.14□□□□□ -0.31
TRERF1-201ENST00000340840 CCER2I3L3R5 266 aa13.13□□□□□ -0.31
TRERF1-201ENST00000340840 CDK11AQ9UQ88 783 aaPredicted RBP13.12□□□□□ -0.31
TRERF1-201ENST00000340840 ARHGAP35Q9NRY4 1499 aa13.1□□□□□ -0.31
TRERF1-201ENST00000340840 KCNH8Q96L42 1107 aa13.1□□□□□ -0.31
TRERF1-201ENST00000340840 HNRNPUQ00839 825 aaKnown RBP eCLIP13.09□□□□□ -0.31
TRERF1-201ENST00000340840 MTUS2Q5JR59 1369 aa13.09□□□□□ -0.31
TRERF1-201ENST00000340840 TRHP20396 242 aaPredicted RBP13.09□□□□□ -0.31
TRERF1-201ENST00000340840 CADPSQ9ULU8 1353 aa13.08□□□□□ -0.32
TRERF1-201ENST00000340840 NPM1P06748 294 aaKnown RBP eCLIP13.07□□□□□ -0.32
TRERF1-201ENST00000340840 PPP1R15AO75807 674 aaPredicted RBP13.07□□□□□ -0.32
TRERF1-201ENST00000340840 BIVM-ERCC5R4GMW8 1640 aa13.06□□□□□ -0.32
TRERF1-201ENST00000340840 CUX1P39880 1505 aa13.05□□□□□ -0.32
TRERF1-201ENST00000340840 IGF1RP08069 1367 aa13.05□□□□□ -0.32
TRERF1-201ENST00000340840 ARID3CA6NKF2 412 aa13.03□□□□□ -0.32
TRERF1-201ENST00000340840 LRRC9Q6ZRR7 1453 aa13.02□□□□□ -0.32
TRERF1-201ENST00000340840 PHLDB1Q86UU1 1377 aa13.01□□□□□ -0.33
TRERF1-201ENST00000340840 CFTRP13569 1480 aa13.01□□□□□ -0.33
TRERF1-201ENST00000340840 HMGXB3Q12766 1538 aa13□□□□□ -0.33
TRERF1-201ENST00000340840 RBM19Q9Y4C8 960 aaKnown RBP13□□□□□ -0.33
TRERF1-201ENST00000340840 TIAM1Q13009 1591 aa12.99□□□□□ -0.33
TRERF1-201ENST00000340840 EIF4G2P78344 907 aaKnown RBP eCLIP12.97□□□□□ -0.33
TRERF1-201ENST00000340840 MAP3K1Q13233 1512 aa12.97□□□□□ -0.33
TRERF1-201ENST00000340840 FHOD3Q2V2M9 1422 aa12.96□□□□□ -0.33
TRERF1-201ENST00000340840 POLR3GLQ9BT43 218 aa12.96□□□□□ -0.33
TRERF1-201ENST00000340840 NESP48681 1621 aa12.96□□□□□ -0.34
TRERF1-201ENST00000340840 FMN1Q68DA7 1419 aa12.95□□□□□ -0.34
TRERF1-201ENST00000340840 CHIC2Q9UKJ5 165 aa12.95□□□□□ -0.34
TRERF1-201ENST00000340840 IRX6P78412 446 aaPredicted RBP12.95□□□□□ -0.34
TRERF1-201ENST00000340840 WDR97A6NE52 1622 aa12.93□□□□□ -0.34
TRERF1-201ENST00000340840 RRP7BPQ9NSQ0 103 aa12.93□□□□□ -0.34
TRERF1-201ENST00000340840 FGD5Q6ZNL6 1462 aa12.93□□□□□ -0.34
TRERF1-201ENST00000340840 FAM9BQ8IZU0 186 aa12.92□□□□□ -0.34
TRERF1-201ENST00000340840 OSCARQ8IYS5 282 aa12.92□□□□□ -0.34
TRERF1-201ENST00000340840 CNGB1Q14028 1251 aaPredicted RBP12.91□□□□□ -0.34
TRERF1-201ENST00000340840 MRS2Q9HD23 443 aa12.91□□□□□ -0.34
TRERF1-201ENST00000340840 MAPKBP1O60336 1514 aa12.91□□□□□ -0.34
TRERF1-201ENST00000340840 FANCD2Q9BXW9 1451 aa12.91□□□□□ -0.34
TRERF1-201ENST00000340840 CCDC18Q5T9S5 1454 aa12.89□□□□□ -0.35
TRERF1-201ENST00000340840 ERICH6BQ5W0A0 696 aa12.88□□□□□ -0.35
TRERF1-201ENST00000340840 CYB5RLQ6IPT4 315 aa12.88□□□□□ -0.35
TRERF1-201ENST00000340840 TDRD9Q8NDG6 1382 aaKnown RBP12.88□□□□□ -0.35
TRERF1-201ENST00000340840 PPP4R2Q9NY27 417 aa12.88□□□□□ -0.35
TRERF1-201ENST00000340840 FGD6Q6ZV73 1430 aa12.88□□□□□ -0.35
TRERF1-201ENST00000340840 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.88□□□□□ -0.35
TRERF1-201ENST00000340840 CASKIN1Q8WXD9 1431 aa12.88□□□□□ -0.35
TRERF1-201ENST00000340840 FYCO1Q9BQS8 1478 aa12.87□□□□□ -0.35
TRERF1-201ENST00000340840 HSPA5P11021 654 aaKnown RBP12.87□□□□□ -0.35
TRERF1-201ENST00000340840 UACAQ9BZF9 1416 aa12.86□□□□□ -0.35
TRERF1-201ENST00000340840 BCL11AQ9H165 835 aa12.84□□□□□ -0.35
TRERF1-201ENST00000340840 ZNF326Q5BKZ1 582 aaKnown RBP12.83□□□□□ -0.36
TRERF1-201ENST00000340840 EFCAB5A4FU69 1503 aa12.83□□□□□ -0.36
TRERF1-201ENST00000340840 PCF11O94913 1555 aaKnown RBP12.82□□□□□ -0.36
TRERF1-201ENST00000340840 RTL5Q5HYW3 569 aaPredicted RBP12.81□□□□□ -0.36
TRERF1-201ENST00000340840 PLPPR3Q6T4P5 718 aa12.81□□□□□ -0.36
TRERF1-201ENST00000340840 HFM1A2PYH4 1435 aa12.8□□□□□ -0.36
TRERF1-201ENST00000340840 ANP32AP39687 249 aaKnown RBP12.8□□□□□ -0.36
TRERF1-201ENST00000340840 SLC4A1APQ9BWU0 796 aaKnown RBP12.79□□□□□ -0.36
TRERF1-201ENST00000340840 MYOM3Q5VTT5 1437 aa12.79□□□□□ -0.36
TRERF1-201ENST00000340840 AQRO60306 1485 aaKnown RBP eCLIP12.78□□□□□ -0.36
TRERF1-201ENST00000340840 RAD54L2Q9Y4B4 1467 aa12.78□□□□□ -0.36
TRERF1-201ENST00000340840 CCDC136Q96JN2 1154 aa12.77□□□□□ -0.36
TRERF1-201ENST00000340840 MPHOSPH9Q99550 1183 aa12.77□□□□□ -0.36
TRERF1-201ENST00000340840 FANCIQ9NVI1 1328 aa12.77□□□□□ -0.36
TRERF1-201ENST00000340840 B4GALNT3Q6L9W6 998 aa12.76□□□□□ -0.37
TRERF1-201ENST00000340840 L3MBTL2Q969R5 705 aa12.76□□□□□ -0.37
TRERF1-201ENST00000340840 NCOA2Q15596 1464 aa12.75□□□□□ -0.37
TRERF1-201ENST00000340840 WASHC2AQ641Q2 1341 aa12.74□□□□□ -0.37
TRERF1-201ENST00000340840 TMC1Q8TDI8 760 aa12.73□□□□□ -0.37
TRERF1-201ENST00000340840 PRKRIP1Q9H875 184 aaPredicted RBP12.73□□□□□ -0.37
TRERF1-201ENST00000340840 NAIPQ13075 1403 aa12.72□□□□□ -0.37
TRERF1-201ENST00000340840 CFAP43Q8NDM7 1665 aa12.72□□□□□ -0.37
TRERF1-201ENST00000340840 FOXD1Q16676 465 aa12.71□□□□□ -0.37
TRERF1-201ENST00000340840 ZNF777Q9ULD5 760 aaPredicted RBP12.71□□□□□ -0.37
TRERF1-201ENST00000340840 CNTLNQ9NXG0 1405 aa12.71□□□□□ -0.38
TRERF1-201ENST00000340840 ABCA10Q8WWZ4 1543 aa12.71□□□□□ -0.38
TRERF1-201ENST00000340840 ZBED9Q6R2W3 1325 aa12.71□□□□□ -0.38
TRERF1-201ENST00000340840 POLA1P09884 1462 aaPredicted RBP12.7□□□□□ -0.38
TRERF1-201ENST00000340840 DNMBPQ6XZF7 1577 aa12.68□□□□□ -0.38
TRERF1-201ENST00000340840 TOPBP1Q92547 1522 aa12.68□□□□□ -0.38
TRERF1-201ENST00000340840 CCDC7Q96M83 1385 aa12.68□□□□□ -0.38
TRERF1-201ENST00000340840 ZBTB47Q9UFB7 747 aaPredicted RBP12.68□□□□□ -0.38
TRERF1-201ENST00000340840 NOP58Q9Y2X3 529 aaKnown RBP12.67□□□□□ -0.38
TRERF1-201ENST00000340840 EHBP1L1Q8N3D4 1523 aa12.67□□□□□ -0.38
TRERF1-201ENST00000340840 NBR1Q14596 966 aa12.67□□□□□ -0.38
TRERF1-201ENST00000340840 PTPN23Q9H3S7 1636 aa12.67□□□□□ -0.38
TRERF1-201ENST00000340840 GAPVD1Q14C86 1478 aa12.66□□□□□ -0.38
TRERF1-201ENST00000340840 LAMC3Q9Y6N6 1575 aa12.66□□□□□ -0.38
TRERF1-201ENST00000340840 CUL7Q14999 1698 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms