RNA–Protein interactions for RNA: ENST00000340840.6

TRERF1-201, Transcript of transcriptional regulating factor 1, humanhuman

TSL 5 BASIC

Gene TRERF1, Length 4,174 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1-201ENST00000340840 NISCHQ9Y2I1 1504 aa18.08■□□□□ 0.48
TRERF1-201ENST00000340840 DCAF8L2P0C7V8 631 aa16.36■□□□□ 0.21
TRERF1-201ENST00000340840 SHROOM4Q9ULL8 1493 aa16■□□□□ 0.15
TRERF1-201ENST00000340840 SUPT5HO00267 1087 aaKnown RBP15.96■□□□□ 0.14
TRERF1-201ENST00000340840 HRCP23327 699 aa15.34■□□□□ 0.05
TRERF1-201ENST00000340840 CHIC1Q5VXU3 224 aa15.34■□□□□ 0.05
TRERF1-201ENST00000340840 PCGF6Q9BYE7 350 aa15.33■□□□□ 0.05
TRERF1-201ENST00000340840 ABCC9O60706 1549 aa15.29■□□□□ 0.04
TRERF1-201ENST00000340840 ZCCHC6Q5VYS8 1495 aaKnown RBP15.27■□□□□ 0.03
TRERF1-201ENST00000340840 CCDC180Q9P1Z9 1646 aa15.1■□□□□ 0.01
TRERF1-201ENST00000340840 MYO15BQ96JP2 1530 aa15□□□□□ -0.01
TRERF1-201ENST00000340840 LOC105371045A0A1W2PR82 267 aa14.95□□□□□ -0.02
TRERF1-201ENST00000340840 TRIM26Q12899 539 aaPredicted RBP14.94□□□□□ -0.02
TRERF1-201ENST00000340840 PPARGC1BQ86YN6 1023 aaKnown RBP14.92□□□□□ -0.02
TRERF1-201ENST00000340840 ZEB1P37275 1124 aaPredicted RBP14.91□□□□□ -0.02
TRERF1-201ENST00000340840 DCAF1Q9Y4B6 1507 aa14.87□□□□□ -0.03
TRERF1-201ENST00000340840 TRIM41Q8WV44 630 aa14.85□□□□□ -0.03
TRERF1-201ENST00000340840 PABPN1Q86U42 306 aaKnown RBP eCLIP14.8□□□□□ -0.04
TRERF1-201ENST00000340840 FAM9AQ8IZU1 332 aaPredicted RBP14.8□□□□□ -0.04
TRERF1-201ENST00000340840 EHMT2Q96KQ7 1210 aa14.74□□□□□ -0.05
TRERF1-201ENST00000340840 PELP1Q8IZL8 1130 aaKnown RBP14.63□□□□□ -0.07
TRERF1-201ENST00000340840 CCER1Q8TC90 406 aaPredicted RBP14.49□□□□□ -0.09
TRERF1-201ENST00000340840 RSF1Q96T23 1441 aaPredicted RBP14.45□□□□□ -0.1
TRERF1-201ENST00000340840 SCRIBQ14160 1630 aa14.42□□□□□ -0.1
TRERF1-201ENST00000340840 CENPBP07199 599 aaPredicted RBP14.38□□□□□ -0.11
TRERF1-201ENST00000340840 TTBK1Q5TCY1 1321 aaPredicted RBP14.33□□□□□ -0.12
TRERF1-201ENST00000340840 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.3□□□□□ -0.12
TRERF1-201ENST00000340840 RB1CC1Q8TDY2 1594 aa14.29□□□□□ -0.12
TRERF1-201ENST00000340840 UBTFP17480 764 aaKnown RBP14.23□□□□□ -0.13
TRERF1-201ENST00000340840 DIEXFQ68CQ4 756 aaKnown RBP14.2□□□□□ -0.14
TRERF1-201ENST00000340840 SCAF1Q9H7N4 1312 aaKnown RBP14.19□□□□□ -0.14
TRERF1-201ENST00000340840 APLP2Q06481 763 aa14.18□□□□□ -0.14
TRERF1-201ENST00000340840 NACADO15069 1562 aa14.17□□□□□ -0.14
TRERF1-201ENST00000340840 ACIN1Q9UKV3 1341 aaKnown RBP14.15□□□□□ -0.14
TRERF1-201ENST00000340840 CECR2Q9BXF3 1484 aa14.1□□□□□ -0.15
TRERF1-201ENST00000340840 MYT1Q01538 1121 aa14.07□□□□□ -0.16
TRERF1-201ENST00000340840 GTF3C3Q9Y5Q9 886 aa14.05□□□□□ -0.16
TRERF1-201ENST00000340840 MROH2BQ7Z745 1585 aa14.04□□□□□ -0.16
TRERF1-201ENST00000340840 YTHDC1Q96MU7 727 aaKnown RBP14.03□□□□□ -0.16
TRERF1-201ENST00000340840 NEUROD1Q13562 356 aa14.02□□□□□ -0.17
TRERF1-201ENST00000340840 CSRNP3Q8WYN3 585 aa14.02□□□□□ -0.17
TRERF1-201ENST00000340840 ZNF316A6NFI3 1004 aaPredicted RBP14□□□□□ -0.17
TRERF1-201ENST00000340840 HNRNPUL2Q1KMD3 747 aaKnown RBP13.98□□□□□ -0.17
TRERF1-201ENST00000340840 CEP162Q5TB80 1403 aa13.95□□□□□ -0.18
TRERF1-201ENST00000340840 BAZ1AQ9NRL2 1556 aaPredicted RBP13.95□□□□□ -0.18
TRERF1-201ENST00000340840 RANGAP1P46060 587 aaPredicted RBP13.94□□□□□ -0.18
TRERF1-201ENST00000340840 EEA1Q15075 1411 aa13.93□□□□□ -0.18
TRERF1-201ENST00000340840 WIZO95785 1651 aa13.92□□□□□ -0.18
TRERF1-201ENST00000340840 TNIKQ9UKE5 1360 aa13.91□□□□□ -0.18
TRERF1-201ENST00000340840 WRNQ14191 1432 aaPredicted RBP eCLIP13.85□□□□□ -0.19
TRERF1-201ENST00000340840 GOLGA3Q08378 1498 aa13.82□□□□□ -0.2
TRERF1-201ENST00000340840 CCDC88BA6NC98 1476 aa13.82□□□□□ -0.2
TRERF1-201ENST00000340840 ABCC8Q09428 1581 aa13.8□□□□□ -0.2
TRERF1-201ENST00000340840 SOGA1O94964 1423 aa13.8□□□□□ -0.2
TRERF1-201ENST00000340840 TOP2AP11388 1531 aaKnown RBP13.79□□□□□ -0.2
TRERF1-201ENST00000340840 CLIP1P30622 1438 aa13.74□□□□□ -0.21
TRERF1-201ENST00000340840 MIER1Q8N108 512 aa13.72□□□□□ -0.21
TRERF1-201ENST00000340840 CEP164Q9UPV0 1460 aa13.71□□□□□ -0.21
TRERF1-201ENST00000340840 SMARCA4P51532 1647 aa13.67□□□□□ -0.22
TRERF1-201ENST00000340840 DNAJC5BQ9UF47 199 aa13.66□□□□□ -0.22
TRERF1-201ENST00000340840 FBLN2P98095 1184 aa13.64□□□□□ -0.23
TRERF1-201ENST00000340840 SMARCA2P51531 1590 aa13.64□□□□□ -0.23
TRERF1-201ENST00000340840 CLSPNQ9HAW4 1339 aa13.64□□□□□ -0.23
TRERF1-201ENST00000340840 ITGAEP38570 1179 aa13.62□□□□□ -0.23
TRERF1-201ENST00000340840 RUSC2Q8N2Y8 1516 aa13.61□□□□□ -0.23
TRERF1-201ENST00000340840 VPS8Q8N3P4 1428 aa13.61□□□□□ -0.23
TRERF1-201ENST00000340840 EIF4G1Q04637 1599 aaKnown RBP13.56□□□□□ -0.24
TRERF1-201ENST00000340840 NEFLP07196 543 aa13.54□□□□□ -0.24
TRERF1-201ENST00000340840 ERCC6Q03468 1493 aa13.52□□□□□ -0.24
TRERF1-201ENST00000340840 ATP1B4Q9UN42 357 aaPredicted RBP13.51□□□□□ -0.25
TRERF1-201ENST00000340840 BAZ1BQ9UIG0 1483 aaKnown RBP13.51□□□□□ -0.25
TRERF1-201ENST00000340840 RAPGEF2Q9Y4G8 1499 aa13.45□□□□□ -0.26
TRERF1-201ENST00000340840 KIF21BO75037 1637 aa13.44□□□□□ -0.26
TRERF1-201ENST00000340840 BICRAQ9NZM4 1560 aa13.43□□□□□ -0.26
TRERF1-201ENST00000340840 FAM50AQ14320 339 aaKnown RBP13.42□□□□□ -0.26
TRERF1-201ENST00000340840 KIF27Q86VH2 1401 aa13.38□□□□□ -0.27
TRERF1-201ENST00000340840 DHX57Q6P158 1386 aaKnown RBP13.38□□□□□ -0.27
TRERF1-201ENST00000340840 ATAD2BQ9ULI0 1458 aa13.38□□□□□ -0.27
TRERF1-201ENST00000340840 SUPT16HQ9Y5B9 1047 aaKnown RBP13.37□□□□□ -0.27
TRERF1-201ENST00000340840 SYNJ1O43426 1573 aa13.37□□□□□ -0.27
TRERF1-201ENST00000340840 UNC13AQ9UPW8 1703 aa13.37□□□□□ -0.27
TRERF1-201ENST00000340840 CCNB3Q8WWL7 1395 aa13.36□□□□□ -0.27
TRERF1-201ENST00000340840 KANK4Q5T7N3 995 aaPredicted RBP13.36□□□□□ -0.27
TRERF1-201ENST00000340840 BCANQ96GW7 911 aa13.35□□□□□ -0.27
TRERF1-201ENST00000340840 ANP32CO43423 234 aa13.33□□□□□ -0.27
TRERF1-201ENST00000340840 DDX10Q13206 875 aaKnown RBP13.32□□□□□ -0.28
TRERF1-201ENST00000340840 FKBP8Q14318 412 aa13.29□□□□□ -0.28
TRERF1-201ENST00000340840 ERICH6Q7L0X2 663 aa13.29□□□□□ -0.28
TRERF1-201ENST00000340840 ERICH3Q5RHP9 1530 aa13.25□□□□□ -0.29
TRERF1-201ENST00000340840 P3H3Q8IVL6 736 aa13.25□□□□□ -0.29
TRERF1-201ENST00000340840 PEG3Q9GZU2 1588 aa13.25□□□□□ -0.29
TRERF1-201ENST00000340840 RAB3GAP2Q9H2M9 1393 aa13.23□□□□□ -0.29
TRERF1-201ENST00000340840 PRXQ9BXM0 1461 aa13.21□□□□□ -0.29
TRERF1-201ENST00000340840 TONSLQ96HA7 1378 aa13.21□□□□□ -0.29
TRERF1-201ENST00000340840 TOP2BQ02880 1626 aa13.21□□□□□ -0.29
TRERF1-201ENST00000340840 RRBP1Q9P2E9 1410 aaKnown RBP13.21□□□□□ -0.29
TRERF1-201ENST00000340840 SETD5Q9C0A6 1442 aa13.21□□□□□ -0.3
TRERF1-201ENST00000340840 TIMELESSQ9UNS1 1208 aa13.2□□□□□ -0.3
TRERF1-201ENST00000340840 ARAP1Q96P48 1450 aa13.2□□□□□ -0.3
TRERF1-201ENST00000340840 CHMP7Q8WUX9 453 aaPredicted RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms