RNA–Protein interactions for RNA: ENST00000338163.10

RBM39-202, Transcript of RNA binding motif protein 39, humanhuman

TSL 2

Gene RBM39, Length 2,792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-202ENST00000338163 EEA1Q15075 1411 aa17.24■□□□□ 0.35
RBM39-202ENST00000338163 GAPVD1Q14C86 1478 aa17.21■□□□□ 0.35
RBM39-202ENST00000338163 IGF1RP08069 1367 aa17.2■□□□□ 0.34
RBM39-202ENST00000338163 CLIP1P30622 1438 aa17.19■□□□□ 0.34
RBM39-202ENST00000338163 WDR97A6NE52 1622 aa17.16■□□□□ 0.34
RBM39-202ENST00000338163 TSHZ2Q9NRE2 1034 aa17.16■□□□□ 0.34
RBM39-202ENST00000338163 CLSPNQ9HAW4 1339 aa17.15■□□□□ 0.34
RBM39-202ENST00000338163 ABCA5Q8WWZ7 1642 aa17.13■□□□□ 0.33
RBM39-202ENST00000338163 CARMIL1Q5VZK9 1371 aa17.12■□□□□ 0.33
RBM39-202ENST00000338163 BCANQ96GW7 911 aa17.12■□□□□ 0.33
RBM39-202ENST00000338163 EIF4G3O43432 1585 aaKnown RBP17.12■□□□□ 0.33
RBM39-202ENST00000338163 GRIN2BQ13224 1484 aa17.11■□□□□ 0.33
RBM39-202ENST00000338163 VPS8Q8N3P4 1428 aa17.1■□□□□ 0.33
RBM39-202ENST00000338163 FBLN2P98095 1184 aa17.1■□□□□ 0.33
RBM39-202ENST00000338163 ANP32EQ9BTT0 268 aa17.1■□□□□ 0.33
RBM39-202ENST00000338163 RAPGEF2Q9Y4G8 1499 aa17.07■□□□□ 0.32
RBM39-202ENST00000338163 ERICH3Q5RHP9 1530 aa17.06■□□□□ 0.32
RBM39-202ENST00000338163 PRXQ9BXM0 1461 aa17.06■□□□□ 0.32
RBM39-202ENST00000338163 SNAPC4Q5SXM2 1469 aa17.05■□□□□ 0.32
RBM39-202ENST00000338163 DHX57Q6P158 1386 aaKnown RBP17.04■□□□□ 0.32
RBM39-202ENST00000338163 CHMP7Q8WUX9 453 aaPredicted RBP17.04■□□□□ 0.32
RBM39-202ENST00000338163 KCNH8Q96L42 1107 aa17.03■□□□□ 0.32
RBM39-202ENST00000338163 PBRM1Q86U86 1689 aa17.02■□□□□ 0.31
RBM39-202ENST00000338163 ITGAEP38570 1179 aa17■□□□□ 0.31
RBM39-202ENST00000338163 FHAD1B1AJZ9 1412 aa17■□□□□ 0.31
RBM39-202ENST00000338163 KIF21BO75037 1637 aa16.98■□□□□ 0.31
RBM39-202ENST00000338163 BCL11AQ9H165 835 aa16.97■□□□□ 0.31
RBM39-202ENST00000338163 MAGI1Q96QZ7 1491 aaPredicted RBP16.97■□□□□ 0.31
RBM39-202ENST00000338163 CUL7Q14999 1698 aa16.97■□□□□ 0.31
RBM39-202ENST00000338163 FKBP8Q14318 412 aa16.96■□□□□ 0.31
RBM39-202ENST00000338163 ADAMTS12P58397 1594 aa16.95■□□□□ 0.3
RBM39-202ENST00000338163 KANK4Q5T7N3 995 aaPredicted RBP16.93■□□□□ 0.3
RBM39-202ENST00000338163 SYNJ2O15056 1496 aa16.93■□□□□ 0.3
RBM39-202ENST00000338163 GRIN2AQ12879 1464 aa16.9■□□□□ 0.3
RBM39-202ENST00000338163 DDX10Q13206 875 aaKnown RBP16.86■□□□□ 0.29
RBM39-202ENST00000338163 NEFLP07196 543 aa16.85■□□□□ 0.29
RBM39-202ENST00000338163 P3H3Q8IVL6 736 aa16.81■□□□□ 0.28
RBM39-202ENST00000338163 TRIM52Q96A61 297 aa16.81■□□□□ 0.28
RBM39-202ENST00000338163 RBM19Q9Y4C8 960 aaKnown RBP16.8■□□□□ 0.28
RBM39-202ENST00000338163 CHD1O14646 1710 aa16.78■□□□□ 0.28
RBM39-202ENST00000338163 CEP170Q5SW79 1584 aa16.77■□□□□ 0.28
RBM39-202ENST00000338163 HIRIP3Q9BW71 556 aaPredicted RBP16.77■□□□□ 0.28
RBM39-202ENST00000338163 NUP160Q12769 1436 aa16.76■□□□□ 0.27
RBM39-202ENST00000338163 CCNB3Q8WWL7 1395 aa16.76■□□□□ 0.27
RBM39-202ENST00000338163 KIAA0586Q9BVV6 1533 aa16.75■□□□□ 0.27
RBM39-202ENST00000338163 OSCARQ8IYS5 282 aa16.75■□□□□ 0.27
RBM39-202ENST00000338163 ARAP1Q96P48 1450 aa16.74■□□□□ 0.27
RBM39-202ENST00000338163 JPH4Q96JJ6 628 aa16.74■□□□□ 0.27
RBM39-202ENST00000338163 IQGAP2Q13576 1575 aa16.72■□□□□ 0.27
RBM39-202ENST00000338163 RRBP1Q9P2E9 1410 aaKnown RBP16.72■□□□□ 0.27
RBM39-202ENST00000338163 RAB3GAP2Q9H2M9 1393 aa16.71■□□□□ 0.27
RBM39-202ENST00000338163 SIN3AQ96ST3 1273 aa16.71■□□□□ 0.27
RBM39-202ENST00000338163 CTTNBP2Q8WZ74 1663 aa16.71■□□□□ 0.27
RBM39-202ENST00000338163 ARHGAP35Q9NRY4 1499 aa16.68■□□□□ 0.26
RBM39-202ENST00000338163 FHOD3Q2V2M9 1422 aa16.66■□□□□ 0.26
RBM39-202ENST00000338163 ANP32CO43423 234 aa16.65■□□□□ 0.26
RBM39-202ENST00000338163 FAM50AQ14320 339 aaKnown RBP16.64■□□□□ 0.25
RBM39-202ENST00000338163 PRG4Q92954 1404 aaPredicted RBP16.63■□□□□ 0.25
RBM39-202ENST00000338163 ATP1B4Q9UN42 357 aaPredicted RBP16.62■□□□□ 0.25
RBM39-202ENST00000338163 ERICH6Q7L0X2 663 aa16.61■□□□□ 0.25
RBM39-202ENST00000338163 MAPKBP1O60336 1514 aa16.61■□□□□ 0.25
RBM39-202ENST00000338163 UGGT2Q9NYU1 1516 aa16.61■□□□□ 0.25
RBM39-202ENST00000338163 IRX6P78412 446 aaPredicted RBP16.61■□□□□ 0.25
RBM39-202ENST00000338163 PPP1R15AO75807 674 aaPredicted RBP16.6■□□□□ 0.25
RBM39-202ENST00000338163 CLASP1Q7Z460 1538 aa16.59■□□□□ 0.25
RBM39-202ENST00000338163 CARMIL2Q6F5E8 1435 aa16.59■□□□□ 0.25
RBM39-202ENST00000338163 MSH5O43196 834 aa16.59■□□□□ 0.25
RBM39-202ENST00000338163 DISP1Q96F81 1524 aa16.59■□□□□ 0.25
RBM39-202ENST00000338163 EFCAB5A4FU69 1503 aa16.58■□□□□ 0.24
RBM39-202ENST00000338163 SETD5Q9C0A6 1442 aa16.56■□□□□ 0.24
RBM39-202ENST00000338163 SAMD9Q5K651 1589 aa16.55■□□□□ 0.24
RBM39-202ENST00000338163 CCER2I3L3R5 266 aa16.54■□□□□ 0.24
RBM39-202ENST00000338163 KIAA0556O60303 1618 aa16.54■□□□□ 0.24
RBM39-202ENST00000338163 ARID3CA6NKF2 412 aa16.54■□□□□ 0.24
RBM39-202ENST00000338163 ERCC6L2Q5T890 1561 aa16.53■□□□□ 0.24
RBM39-202ENST00000338163 HNRNPUQ00839 825 aaKnown RBP eCLIP16.52■□□□□ 0.24
RBM39-202ENST00000338163 CDK11AQ9UQ88 783 aaPredicted RBP16.52■□□□□ 0.24
RBM39-202ENST00000338163 FMN1Q68DA7 1419 aa16.51■□□□□ 0.23
RBM39-202ENST00000338163 PTPRGP23470 1445 aa16.5■□□□□ 0.23
RBM39-202ENST00000338163 SHROOM2Q13796 1616 aa16.5■□□□□ 0.23
RBM39-202ENST00000338163 PHLDB1Q86UU1 1377 aa16.46■□□□□ 0.23
RBM39-202ENST00000338163 PLB1Q6P1J6 1458 aa16.44■□□□□ 0.22
RBM39-202ENST00000338163 TONSLQ96HA7 1378 aa16.43■□□□□ 0.22
RBM39-202ENST00000338163 FANCIQ9NVI1 1328 aa16.42■□□□□ 0.22
RBM39-202ENST00000338163 CASKIN1Q8WXD9 1431 aa16.42■□□□□ 0.22
RBM39-202ENST00000338163 PCF11O94913 1555 aaKnown RBP16.42■□□□□ 0.22
RBM39-202ENST00000338163 TIMELESSQ9UNS1 1208 aa16.41■□□□□ 0.22
RBM39-202ENST00000338163 CYB5RLQ6IPT4 315 aa16.39■□□□□ 0.21
RBM39-202ENST00000338163 ARHGEF11O15085 1522 aa16.39■□□□□ 0.21
RBM39-202ENST00000338163 TIAM1Q13009 1591 aa16.39■□□□□ 0.21
RBM39-202ENST00000338163 FYCO1Q9BQS8 1478 aa16.38■□□□□ 0.21
RBM39-202ENST00000338163 LRRC9Q6ZRR7 1453 aa16.38■□□□□ 0.21
RBM39-202ENST00000338163 UACAQ9BZF9 1416 aa16.36■□□□□ 0.21
RBM39-202ENST00000338163 NUP153P49790 1475 aaKnown RBP16.34■□□□□ 0.21
RBM39-202ENST00000338163 RAPGEF6Q8TEU7 1601 aa16.33■□□□□ 0.2
RBM39-202ENST00000338163 CDK13Q14004 1512 aaKnown RBP16.32■□□□□ 0.2
RBM39-202ENST00000338163 B4GALNT3Q6L9W6 998 aa16.32■□□□□ 0.2
RBM39-202ENST00000338163 EPRSP07814 1512 aaKnown RBP16.31■□□□□ 0.2
RBM39-202ENST00000338163 ABCA8O94911 1581 aa16.31■□□□□ 0.2
RBM39-202ENST00000338163 HECW1Q76N89 1606 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms