RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 SIN3AQ96ST3 1273 aa20.73■□□□□ 0.91
SSBP3-201ENST00000326956 CFTRP13569 1480 aa20.72■□□□□ 0.91
SSBP3-201ENST00000326956 TIAM1Q13009 1591 aa20.72■□□□□ 0.91
SSBP3-201ENST00000326956 IGF1RP08069 1367 aa20.69■□□□□ 0.9
SSBP3-201ENST00000326956 MAP3K1Q13233 1512 aa20.69■□□□□ 0.9
SSBP3-201ENST00000326956 ANP32EQ9BTT0 268 aa20.68■□□□□ 0.9
SSBP3-201ENST00000326956 CARMIL1Q5VZK9 1371 aa20.68■□□□□ 0.9
SSBP3-201ENST00000326956 LRRC9Q6ZRR7 1453 aa20.67■□□□□ 0.9
SSBP3-201ENST00000326956 TIMELESSQ9UNS1 1208 aa20.67■□□□□ 0.9
SSBP3-201ENST00000326956 PHLDB1Q86UU1 1377 aa20.66■□□□□ 0.9
SSBP3-201ENST00000326956 ANP32CO43423 234 aa20.66■□□□□ 0.9
SSBP3-201ENST00000326956 FHAD1B1AJZ9 1412 aa20.66■□□□□ 0.9
SSBP3-201ENST00000326956 WDR97A6NE52 1622 aa20.65■□□□□ 0.9
SSBP3-201ENST00000326956 P3H3Q8IVL6 736 aa20.64■□□□□ 0.9
SSBP3-201ENST00000326956 HIRIP3Q9BW71 556 aaPredicted RBP20.61■□□□□ 0.89
SSBP3-201ENST00000326956 PPP1R15AO75807 674 aaPredicted RBP20.6■□□□□ 0.89
SSBP3-201ENST00000326956 CCER2I3L3R5 266 aa20.58■□□□□ 0.89
SSBP3-201ENST00000326956 TRIM52Q96A61 297 aa20.58■□□□□ 0.88
SSBP3-201ENST00000326956 TONSLQ96HA7 1378 aa20.53■□□□□ 0.88
SSBP3-201ENST00000326956 FGD5Q6ZNL6 1462 aa20.52■□□□□ 0.87
SSBP3-201ENST00000326956 CADPSQ9ULU8 1353 aa20.48■□□□□ 0.87
SSBP3-201ENST00000326956 PCF11O94913 1555 aaKnown RBP20.48■□□□□ 0.87
SSBP3-201ENST00000326956 CFAP43Q8NDM7 1665 aa20.47■□□□□ 0.87
SSBP3-201ENST00000326956 FHOD3Q2V2M9 1422 aa20.46■□□□□ 0.87
SSBP3-201ENST00000326956 PRDM2Q13029 1718 aa20.46■□□□□ 0.87
SSBP3-201ENST00000326956 RBM19Q9Y4C8 960 aaKnown RBP20.44■□□□□ 0.86
SSBP3-201ENST00000326956 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.43■□□□□ 0.86
SSBP3-201ENST00000326956 FYCO1Q9BQS8 1478 aa20.42■□□□□ 0.86
SSBP3-201ENST00000326956 CASKIN1Q8WXD9 1431 aa20.39■□□□□ 0.86
SSBP3-201ENST00000326956 MTUS2Q5JR59 1369 aa20.38■□□□□ 0.85
SSBP3-201ENST00000326956 FGD6Q6ZV73 1430 aa20.37■□□□□ 0.85
SSBP3-201ENST00000326956 CCDC18Q5T9S5 1454 aa20.37■□□□□ 0.85
SSBP3-201ENST00000326956 EFCAB5A4FU69 1503 aa20.35■□□□□ 0.85
SSBP3-201ENST00000326956 HNRNPUQ00839 825 aaKnown RBP eCLIP20.35■□□□□ 0.85
SSBP3-201ENST00000326956 FMN1Q68DA7 1419 aa20.34■□□□□ 0.85
SSBP3-201ENST00000326956 AQRO60306 1485 aaKnown RBP eCLIP20.33■□□□□ 0.851e-7■■■■■ 27.3
SSBP3-201ENST00000326956 UACAQ9BZF9 1416 aa20.33■□□□□ 0.84
SSBP3-201ENST00000326956 HFM1A2PYH4 1435 aa20.29■□□□□ 0.84
SSBP3-201ENST00000326956 FANCD2Q9BXW9 1451 aa20.29■□□□□ 0.84
SSBP3-201ENST00000326956 CDK11AQ9UQ88 783 aaPredicted RBP20.28■□□□□ 0.84
SSBP3-201ENST00000326956 RAD54L2Q9Y4B4 1467 aa20.28■□□□□ 0.84
SSBP3-201ENST00000326956 CC2D2AQ9P2K1 1620 aa20.27■□□□□ 0.84
SSBP3-201ENST00000326956 IRX6P78412 446 aaPredicted RBP20.24■□□□□ 0.83
SSBP3-201ENST00000326956 ERICH6Q7L0X2 663 aa20.23■□□□□ 0.83
SSBP3-201ENST00000326956 ABCA10Q8WWZ4 1543 aa20.23■□□□□ 0.83
SSBP3-201ENST00000326956 PTPN23Q9H3S7 1636 aa20.22■□□□□ 0.83
SSBP3-201ENST00000326956 PTPRKQ15262 1439 aa20.22■□□□□ 0.83
SSBP3-201ENST00000326956 NAIPQ13075 1403 aa20.21■□□□□ 0.83
SSBP3-201ENST00000326956 BCL11AQ9H165 835 aa20.2■□□□□ 0.82
SSBP3-201ENST00000326956 MYOM3Q5VTT5 1437 aa20.2■□□□□ 0.82
SSBP3-201ENST00000326956 DNMBPQ6XZF7 1577 aa20.2■□□□□ 0.82
SSBP3-201ENST00000326956 HSPA5P11021 654 aaKnown RBP20.2■□□□□ 0.82
SSBP3-201ENST00000326956 CUL7Q14999 1698 aa20.19■□□□□ 0.82
SSBP3-201ENST00000326956 POLA1P09884 1462 aaPredicted RBP20.19■□□□□ 0.82
SSBP3-201ENST00000326956 EIF4G2P78344 907 aaKnown RBP eCLIP20.19■□□□□ 0.828e-7■■■□□ 16.1
SSBP3-201ENST00000326956 RRP7BPQ9NSQ0 103 aa20.19■□□□□ 0.82
SSBP3-201ENST00000326956 NCOA2Q15596 1464 aa20.18■□□□□ 0.82
SSBP3-201ENST00000326956 CTTNBP2Q8WZ74 1663 aa20.18■□□□□ 0.82
SSBP3-201ENST00000326956 CHIC2Q9UKJ5 165 aa20.17■□□□□ 0.82
SSBP3-201ENST00000326956 SNAPC4Q5SXM2 1469 aa20.16■□□□□ 0.82
SSBP3-201ENST00000326956 TOPBP1Q92547 1522 aa20.16■□□□□ 0.82
SSBP3-201ENST00000326956 WASHC2AQ641Q2 1341 aa20.15■□□□□ 0.82
SSBP3-201ENST00000326956 ERICH6BQ5W0A0 696 aa20.13■□□□□ 0.81
SSBP3-201ENST00000326956 FANCIQ9NVI1 1328 aa20.12■□□□□ 0.81
SSBP3-201ENST00000326956 PPP4R2Q9NY27 417 aa20.1■□□□□ 0.81
SSBP3-201ENST00000326956 SUPT6HQ7KZ85 1726 aaKnown RBP20.1■□□□□ 0.81
SSBP3-201ENST00000326956 MSH5O43196 834 aa20.1■□□□□ 0.81
SSBP3-201ENST00000326956 FAM9BQ8IZU0 186 aa20.09■□□□□ 0.81
SSBP3-201ENST00000326956 EHBP1L1Q8N3D4 1523 aa20.08■□□□□ 0.81
SSBP3-201ENST00000326956 MRS2Q9HD23 443 aa20.06■□□□□ 0.8
SSBP3-201ENST00000326956 TDRD9Q8NDG6 1382 aaKnown RBP20.06■□□□□ 0.8
SSBP3-201ENST00000326956 CNTLNQ9NXG0 1405 aa20.05■□□□□ 0.8
SSBP3-201ENST00000326956 GRIN2BQ13224 1484 aa20.05■□□□□ 0.8
SSBP3-201ENST00000326956 KDM5BQ9UGL1 1544 aa20.04■□□□□ 0.8
SSBP3-201ENST00000326956 MPHOSPH9Q99550 1183 aa20.03■□□□□ 0.8
SSBP3-201ENST00000326956 L3MBTL2Q969R5 705 aa20.03■□□□□ 0.8
SSBP3-201ENST00000326956 THOC2Q8NI27 1593 aaKnown RBP20.03■□□□□ 0.8
SSBP3-201ENST00000326956 SAMD9Q5K651 1589 aa20.02■□□□□ 0.8
SSBP3-201ENST00000326956 PRKRIP1Q9H875 184 aaPredicted RBP20.02■□□□□ 0.79
SSBP3-201ENST00000326956 CCDC184Q52MB2 194 aa20.01■□□□□ 0.79
SSBP3-201ENST00000326956 NESP48681 1621 aa20■□□□□ 0.79
SSBP3-201ENST00000326956 UGGT2Q9NYU1 1516 aa20■□□□□ 0.79
SSBP3-201ENST00000326956 CCDC7Q96M83 1385 aa19.98■□□□□ 0.79
SSBP3-201ENST00000326956 GAPVD1Q14C86 1478 aa19.98■□□□□ 0.79
SSBP3-201ENST00000326956 FOXD1Q16676 465 aa19.98■□□□□ 0.79
SSBP3-201ENST00000326956 LRRIQ1Q96JM4 1722 aa19.97■□□□□ 0.79
SSBP3-201ENST00000326956 ZBED9Q6R2W3 1325 aa19.97■□□□□ 0.79
SSBP3-201ENST00000326956 B4GALNT3Q6L9W6 998 aa19.96■□□□□ 0.79
SSBP3-201ENST00000326956 HECW1Q76N89 1606 aa19.96■□□□□ 0.79
SSBP3-201ENST00000326956 AKNAQ7Z591 1439 aa19.94■□□□□ 0.78
SSBP3-201ENST00000326956 TCOF1Q13428 1488 aaKnown RBP19.94■□□□□ 0.78
SSBP3-201ENST00000326956 C11orf95C9JLR9 678 aaPredicted RBP19.94■□□□□ 0.78
SSBP3-201ENST00000326956 NCOA1Q15788 1441 aa19.93■□□□□ 0.78
SSBP3-201ENST00000326956 GCC2Q8IWJ2 1684 aa19.93■□□□□ 0.78
SSBP3-201ENST00000326956 ARID3CA6NKF2 412 aa19.93■□□□□ 0.78
SSBP3-201ENST00000326956 ARHGEF11O15085 1522 aa19.91■□□□□ 0.78
SSBP3-201ENST00000326956 URB2Q14146 1524 aaKnown RBP19.91■□□□□ 0.78
SSBP3-201ENST00000326956 MAGI3Q5TCQ9 1506 aa19.9■□□□□ 0.78
SSBP3-201ENST00000326956 MYT1LQ9UL68 1186 aa19.9■□□□□ 0.78
SSBP3-201ENST00000326956 DENND4BO75064 1496 aaPredicted RBP19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms