RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 DDX10Q13206 875 aaKnown RBP28.62■■■□□ 2.17
CRLF3-201ENST00000324238 RAD54L2Q9Y4B4 1467 aa28.6■■■□□ 2.17
CRLF3-201ENST00000324238 DNAJC5BQ9UF47 199 aa28.58■■■□□ 2.17
CRLF3-201ENST00000324238 BCANQ96GW7 911 aa28.57■■■□□ 2.16
CRLF3-201ENST00000324238 NESP48681 1621 aa28.56■■■□□ 2.16
CRLF3-201ENST00000324238 PHLDB1Q86UU1 1377 aa28.55■■■□□ 2.16
CRLF3-201ENST00000324238 FANCD2Q9BXW9 1451 aa28.5■■■□□ 2.15
CRLF3-201ENST00000324238 CC2D2AQ9P2K1 1620 aa28.5■■■□□ 2.15
CRLF3-201ENST00000324238 FHOD3Q2V2M9 1422 aa28.48■■■□□ 2.15
CRLF3-201ENST00000324238 MAPKBP1O60336 1514 aa28.47■■■□□ 2.15
CRLF3-201ENST00000324238 SETD5Q9C0A6 1442 aa28.45■■■□□ 2.14
CRLF3-201ENST00000324238 TIAM1Q13009 1591 aa28.4■■■□□ 2.14
CRLF3-201ENST00000324238 LRRC9Q6ZRR7 1453 aa28.39■■■□□ 2.14
CRLF3-201ENST00000324238 ARID3CA6NKF2 412 aa28.38■■■□□ 2.13
CRLF3-201ENST00000324238 TDRD9Q8NDG6 1382 aaKnown RBP28.38■■■□□ 2.13
CRLF3-201ENST00000324238 WDR97A6NE52 1622 aa28.37■■■□□ 2.13
CRLF3-201ENST00000324238 TRIM52Q96A61 297 aa28.33■■■□□ 2.13
CRLF3-201ENST00000324238 TSHZ2Q9NRE2 1034 aa28.32■■■□□ 2.12
CRLF3-201ENST00000324238 FKBP8Q14318 412 aa28.29■■■□□ 2.12
CRLF3-201ENST00000324238 POLA1P09884 1462 aaPredicted RBP28.28■■■□□ 2.12
CRLF3-201ENST00000324238 TOPBP1Q92547 1522 aa28.23■■■□□ 2.11
CRLF3-201ENST00000324238 PCF11O94913 1555 aaKnown RBP28.22■■■□□ 2.11
CRLF3-201ENST00000324238 PPP1R15AO75807 674 aaPredicted RBP28.21■■■□□ 2.11
CRLF3-201ENST00000324238 FHAD1B1AJZ9 1412 aa28.21■■■□□ 2.11
CRLF3-201ENST00000324238 MYT1Q01538 1121 aa28.2■■■□□ 2.11
CRLF3-201ENST00000324238 PRDM2Q13029 1718 aa28.15■■■□□ 2.1
CRLF3-201ENST00000324238 CHIC2Q9UKJ5 165 aa28.14■■■□□ 2.1
CRLF3-201ENST00000324238 MTUS2Q5JR59 1369 aa28.12■■■□□ 2.09
CRLF3-201ENST00000324238 MAP3K1Q13233 1512 aa28.1■■■□□ 2.09
CRLF3-201ENST00000324238 ANP32CO43423 234 aa28.09■■■□□ 2.09
CRLF3-201ENST00000324238 DNMBPQ6XZF7 1577 aa28.08■■■□□ 2.09
CRLF3-201ENST00000324238 ABCA10Q8WWZ4 1543 aa28.08■■■□□ 2.09
CRLF3-201ENST00000324238 TONSLQ96HA7 1378 aa28.06■■■□□ 2.08
CRLF3-201ENST00000324238 URB2Q14146 1524 aaKnown RBP28.05■■■□□ 2.08
CRLF3-201ENST00000324238 RRP7BPQ9NSQ0 103 aa28.05■■■□□ 2.08
CRLF3-201ENST00000324238 PTPRKQ15262 1439 aa28.03■■■□□ 2.08
CRLF3-201ENST00000324238 CASKIN1Q8WXD9 1431 aa27.98■■■□□ 2.07
CRLF3-201ENST00000324238 FGD6Q6ZV73 1430 aa27.97■■■□□ 2.07
CRLF3-201ENST00000324238 CFAP43Q8NDM7 1665 aa27.96■■■□□ 2.07
CRLF3-201ENST00000324238 IRX6P78412 446 aaPredicted RBP27.96■■■□□ 2.07
CRLF3-201ENST00000324238 NEFLP07196 543 aa27.95■■■□□ 2.07
CRLF3-201ENST00000324238 GAPVD1Q14C86 1478 aa27.94■■■□□ 2.06
CRLF3-201ENST00000324238 CCDC18Q5T9S5 1454 aa27.93■■■□□ 2.06
CRLF3-201ENST00000324238 FYCO1Q9BQS8 1478 aa27.93■■■□□ 2.06
CRLF3-201ENST00000324238 TIMELESSQ9UNS1 1208 aa27.91■■■□□ 2.06
CRLF3-201ENST00000324238 FMN1Q68DA7 1419 aa27.91■■■□□ 2.06
CRLF3-201ENST00000324238 AQRO60306 1485 aaKnown RBP eCLIP27.89■■■□□ 2.065e-6■■■□□ 16.9
CRLF3-201ENST00000324238 FOXD1Q16676 465 aa27.89■■■□□ 2.05
CRLF3-201ENST00000324238 CCER2I3L3R5 266 aa27.85■■■□□ 2.05
CRLF3-201ENST00000324238 HNRNPUQ00839 825 aaKnown RBP eCLIP27.84■■■□□ 2.05
CRLF3-201ENST00000324238 PDS5BQ9NTI5 1447 aa27.82■■■□□ 2.04
CRLF3-201ENST00000324238 CNGB1Q14028 1251 aaPredicted RBP27.8■■■□□ 2.04
CRLF3-201ENST00000324238 SNAPC4Q5SXM2 1469 aa27.8■■■□□ 2.04
CRLF3-201ENST00000324238 EFCAB5A4FU69 1503 aa27.8■■■□□ 2.04
CRLF3-201ENST00000324238 NCOA2Q15596 1464 aa27.79■■■□□ 2.04
CRLF3-201ENST00000324238 NAIPQ13075 1403 aa27.79■■■□□ 2.04
CRLF3-201ENST00000324238 ANP32EQ9BTT0 268 aa27.78■■■□□ 2.04
CRLF3-201ENST00000324238 UACAQ9BZF9 1416 aa27.77■■■□□ 2.04
CRLF3-201ENST00000324238 HSPA5P11021 654 aaKnown RBP27.77■■■□□ 2.04
CRLF3-201ENST00000324238 RBM19Q9Y4C8 960 aaKnown RBP27.76■■■□□ 2.03
CRLF3-201ENST00000324238 HFM1A2PYH4 1435 aa27.76■■■□□ 2.03
CRLF3-201ENST00000324238 CUL7Q14999 1698 aa27.75■■■□□ 2.03
CRLF3-201ENST00000324238 CCDC184Q52MB2 194 aa27.75■■■□□ 2.03
CRLF3-201ENST00000324238 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.74■■■□□ 2.03
CRLF3-201ENST00000324238 CTTNBP2Q8WZ74 1663 aa27.73■■■□□ 2.03
CRLF3-201ENST00000324238 WASHC2AQ641Q2 1341 aa27.72■■■□□ 2.03
CRLF3-201ENST00000324238 MYOM3Q5VTT5 1437 aa27.72■■■□□ 2.03
CRLF3-201ENST00000324238 PTPN23Q9H3S7 1636 aa27.71■■■□□ 2.03
CRLF3-201ENST00000324238 FBLN2P98095 1184 aa27.71■■■□□ 2.03
CRLF3-201ENST00000324238 LAMC3Q9Y6N6 1575 aa27.7■■■□□ 2.02
CRLF3-201ENST00000324238 ZNF644Q9H582 1327 aaPredicted RBP27.66■■■□□ 2.02
CRLF3-201ENST00000324238 LRRIQ1Q96JM4 1722 aa27.65■■■□□ 2.02
CRLF3-201ENST00000324238 C11orf95C9JLR9 678 aaPredicted RBP27.65■■■□□ 2.02
CRLF3-201ENST00000324238 KIF21AQ7Z4S6 1674 aa27.64■■■□□ 2.02
CRLF3-201ENST00000324238 SENP3-EIF4A1A0A087X0R7 540 aa27.64■■■□□ 2.02
CRLF3-201ENST00000324238 L3MBTL2Q969R5 705 aa27.63■■■□□ 2.01
CRLF3-201ENST00000324238 GRIN2BQ13224 1484 aa27.63■■■□□ 2.01
CRLF3-201ENST00000324238 MAGI3Q5TCQ9 1506 aa27.63■■■□□ 2.01
CRLF3-201ENST00000324238 FAM9BQ8IZU0 186 aa27.63■■■□□ 2.01
CRLF3-201ENST00000324238 ABCA5Q8WWZ7 1642 aa27.62■■■□□ 2.01
CRLF3-201ENST00000324238 CDK13Q14004 1512 aaKnown RBP27.62■■■□□ 2.01
CRLF3-201ENST00000324238 MPHOSPH9Q99550 1183 aa27.6■■■□□ 2.01
CRLF3-201ENST00000324238 ZNF777Q9ULD5 760 aaPredicted RBP27.59■■■□□ 2.01
CRLF3-201ENST00000324238 EIF4G2P78344 907 aaKnown RBP eCLIP27.57■■■□□ 2
CRLF3-201ENST00000324238 KDM5BQ9UGL1 1544 aa27.57■■■□□ 2
CRLF3-201ENST00000324238 KDM6BO15054 1643 aa27.55■■■□□ 2
CRLF3-201ENST00000324238 SAMD9Q5K651 1589 aa27.54■■■□□ 2
CRLF3-201ENST00000324238 ZNF608Q9ULD9 1512 aaPredicted RBP27.54■■■□□ 2
CRLF3-201ENST00000324238 DENND4BO75064 1496 aaPredicted RBP27.54■■■□□ 2
CRLF3-201ENST00000324238 POLR3GLQ9BT43 218 aa27.54■■■□□ 2
CRLF3-201ENST00000324238 NBPF8Q3BBV2 869 aa27.51■■□□□ 1.99
CRLF3-201ENST00000324238 SUPT6HQ7KZ85 1726 aaKnown RBP27.49■■□□□ 1.99
CRLF3-201ENST00000324238 ZNF326Q5BKZ1 582 aaKnown RBP27.48■■□□□ 1.99
CRLF3-201ENST00000324238 MRS2Q9HD23 443 aa27.46■■□□□ 1.99
CRLF3-201ENST00000324238 EPRSP07814 1512 aaKnown RBP27.46■■□□□ 1.99
CRLF3-201ENST00000324238 MSH5O43196 834 aa27.46■■□□□ 1.99
CRLF3-201ENST00000324238 UGGT2Q9NYU1 1516 aa27.46■■□□□ 1.99
CRLF3-201ENST00000324238 TARBP1Q13395 1621 aaKnown RBP27.46■■□□□ 1.99
CRLF3-201ENST00000324238 EHBP1L1Q8N3D4 1523 aa27.44■■□□□ 1.98
CRLF3-201ENST00000324238 SLC4A1APQ9BWU0 796 aaKnown RBP27.42■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms