RNA–Protein interactions for RNA: ENST00000302536.2

VAT1L-201, Transcript of vesicle amine transport 1 like, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAT1L, Length 3,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAT1L-201ENST00000302536 TOPBP1Q92547 1522 aa18.66■□□□□ 0.58
VAT1L-201ENST00000302536 FHOD3Q2V2M9 1422 aa18.65■□□□□ 0.58
VAT1L-201ENST00000302536 PDS5BQ9NTI5 1447 aa18.64■□□□□ 0.58
VAT1L-201ENST00000302536 ARHGAP35Q9NRY4 1499 aa18.61■□□□□ 0.57
VAT1L-201ENST00000302536 MIER1Q8N108 512 aa18.6■□□□□ 0.57
VAT1L-201ENST00000302536 URB2Q14146 1524 aaKnown RBP18.58■□□□□ 0.56
VAT1L-201ENST00000302536 AQRO60306 1485 aaKnown RBP eCLIP18.57■□□□□ 0.56
VAT1L-201ENST00000302536 ZNF316A6NFI3 1004 aaPredicted RBP18.56■□□□□ 0.56
VAT1L-201ENST00000302536 ERICH3Q5RHP9 1530 aa18.54■□□□□ 0.56
VAT1L-201ENST00000302536 ERCC6Q03468 1493 aa18.54■□□□□ 0.56
VAT1L-201ENST00000302536 ANP32EQ9BTT0 268 aa18.52■□□□□ 0.56
VAT1L-201ENST00000302536 NEFLP07196 543 aa18.5■□□□□ 0.55
VAT1L-201ENST00000302536 DNMBPQ6XZF7 1577 aa18.49■□□□□ 0.55
VAT1L-201ENST00000302536 CHIC2Q9UKJ5 165 aa18.49■□□□□ 0.55
VAT1L-201ENST00000302536 GAPVD1Q14C86 1478 aa18.48■□□□□ 0.55
VAT1L-201ENST00000302536 CNGB1Q14028 1251 aaPredicted RBP18.47■□□□□ 0.55
VAT1L-201ENST00000302536 CHMP7Q8WUX9 453 aaPredicted RBP18.46■□□□□ 0.55
VAT1L-201ENST00000302536 CCNB3Q8WWL7 1395 aa18.46■□□□□ 0.55
VAT1L-201ENST00000302536 MTUS2Q5JR59 1369 aa18.44■□□□□ 0.54
VAT1L-201ENST00000302536 ABCA10Q8WWZ4 1543 aa18.42■□□□□ 0.54
VAT1L-201ENST00000302536 LAMC3Q9Y6N6 1575 aa18.4■□□□□ 0.54
VAT1L-201ENST00000302536 SIN3AQ96ST3 1273 aa18.38■□□□□ 0.53
VAT1L-201ENST00000302536 PHLDB1Q86UU1 1377 aa18.38■□□□□ 0.53
VAT1L-201ENST00000302536 HIRIP3Q9BW71 556 aaPredicted RBP18.37■□□□□ 0.53
VAT1L-201ENST00000302536 RRP7BPQ9NSQ0 103 aa18.36■□□□□ 0.53
VAT1L-201ENST00000302536 KIF21AQ7Z4S6 1674 aa18.35■□□□□ 0.53
VAT1L-201ENST00000302536 ZNF608Q9ULD9 1512 aaPredicted RBP18.35■□□□□ 0.53
VAT1L-201ENST00000302536 ZNF777Q9ULD5 760 aaPredicted RBP18.35■□□□□ 0.53
VAT1L-201ENST00000302536 FHAD1B1AJZ9 1412 aa18.35■□□□□ 0.53
VAT1L-201ENST00000302536 TRIM52Q96A61 297 aa18.33■□□□□ 0.53
VAT1L-201ENST00000302536 PRDM2Q13029 1718 aa18.32■□□□□ 0.52
VAT1L-201ENST00000302536 SUPT16HQ9Y5B9 1047 aaKnown RBP18.31■□□□□ 0.52
VAT1L-201ENST00000302536 RAB3GAP2Q9H2M9 1393 aa18.29■□□□□ 0.52
VAT1L-201ENST00000302536 TSHZ2Q9NRE2 1034 aa18.28■□□□□ 0.52
VAT1L-201ENST00000302536 DHX57Q6P158 1386 aaKnown RBP18.28■□□□□ 0.52
VAT1L-201ENST00000302536 MRC2Q9UBG0 1479 aa18.26■□□□□ 0.51
VAT1L-201ENST00000302536 FKBP8Q14318 412 aa18.26■□□□□ 0.51
VAT1L-201ENST00000302536 LRRC9Q6ZRR7 1453 aa18.26■□□□□ 0.51
VAT1L-201ENST00000302536 PCF11O94913 1555 aaKnown RBP18.24■□□□□ 0.51
VAT1L-201ENST00000302536 FMN1Q68DA7 1419 aa18.21■□□□□ 0.51
VAT1L-201ENST00000302536 TIAM1Q13009 1591 aa18.2■□□□□ 0.5
VAT1L-201ENST00000302536 RRBP1Q9P2E9 1410 aaKnown RBP18.18■□□□□ 0.5
VAT1L-201ENST00000302536 FOXD1Q16676 465 aa18.17■□□□□ 0.5
VAT1L-201ENST00000302536 SNAPC4Q5SXM2 1469 aa18.15■□□□□ 0.5
VAT1L-201ENST00000302536 PRKCSHP14314 528 aaPredicted RBP18.15■□□□□ 0.5
VAT1L-201ENST00000302536 GRIN2BQ13224 1484 aa18.14■□□□□ 0.5
VAT1L-201ENST00000302536 ZNF644Q9H582 1327 aaPredicted RBP18.14■□□□□ 0.49
VAT1L-201ENST00000302536 IRX6P78412 446 aaPredicted RBP18.14■□□□□ 0.49
VAT1L-201ENST00000302536 CASKIN1Q8WXD9 1431 aa18.14■□□□□ 0.49
VAT1L-201ENST00000302536 SETD5Q9C0A6 1442 aa18.14■□□□□ 0.49
VAT1L-201ENST00000302536 JPH4Q96JJ6 628 aa18.14■□□□□ 0.49
VAT1L-201ENST00000302536 CUL7Q14999 1698 aa18.1■□□□□ 0.49
VAT1L-201ENST00000302536 CDK13Q14004 1512 aaKnown RBP18.08■□□□□ 0.48
VAT1L-201ENST00000302536 DDX10Q13206 875 aaKnown RBP18.07■□□□□ 0.48
VAT1L-201ENST00000302536 KCNH8Q96L42 1107 aa18.07■□□□□ 0.48
VAT1L-201ENST00000302536 CDK11AQ9UQ88 783 aaPredicted RBP18.07■□□□□ 0.48
VAT1L-201ENST00000302536 IFT140Q96RY7 1462 aa18.07■□□□□ 0.48
VAT1L-201ENST00000302536 FYCO1Q9BQS8 1478 aa18.07■□□□□ 0.48
VAT1L-201ENST00000302536 ABCA5Q8WWZ7 1642 aa18.06■□□□□ 0.48
VAT1L-201ENST00000302536 ZNF326Q5BKZ1 582 aaKnown RBP18.05■□□□□ 0.48
VAT1L-201ENST00000302536 TARBP1Q13395 1621 aaKnown RBP18.05■□□□□ 0.48
VAT1L-201ENST00000302536 FGD6Q6ZV73 1430 aa18.04■□□□□ 0.48
VAT1L-201ENST00000302536 CFDP1Q9UEE9 299 aaPredicted RBP18.04■□□□□ 0.48
VAT1L-201ENST00000302536 NCOA2Q15596 1464 aa18.03■□□□□ 0.48
VAT1L-201ENST00000302536 POLR3GLQ9BT43 218 aa18.02■□□□□ 0.48
VAT1L-201ENST00000302536 EFCAB5A4FU69 1503 aa18.02■□□□□ 0.48
VAT1L-201ENST00000302536 NBR1Q14596 966 aa18.02■□□□□ 0.47
VAT1L-201ENST00000302536 TONSLQ96HA7 1378 aa18■□□□□ 0.47
VAT1L-201ENST00000302536 CTTNBP2Q8WZ74 1663 aa17.99■□□□□ 0.47
VAT1L-201ENST00000302536 PLEKHD1A6NEE1 506 aa17.98■□□□□ 0.47
VAT1L-201ENST00000302536 IQGAP2Q13576 1575 aa17.98■□□□□ 0.47
VAT1L-201ENST00000302536 PTPRKQ15262 1439 aa17.97■□□□□ 0.47
VAT1L-201ENST00000302536 SENP3-EIF4A1A0A087X0R7 540 aa17.96■□□□□ 0.47
VAT1L-201ENST00000302536 MYT1LQ9UL68 1186 aa17.96■□□□□ 0.47
VAT1L-201ENST00000302536 RBM19Q9Y4C8 960 aaKnown RBP17.95■□□□□ 0.46
VAT1L-201ENST00000302536 MYOM3Q5VTT5 1437 aa17.95■□□□□ 0.46
VAT1L-201ENST00000302536 GRIN2AQ12879 1464 aa17.94■□□□□ 0.46
VAT1L-201ENST00000302536 PLB1Q6P1J6 1458 aa17.94■□□□□ 0.46
VAT1L-201ENST00000302536 PRG4Q92954 1404 aaPredicted RBP17.94■□□□□ 0.46
VAT1L-201ENST00000302536 WDR97A6NE52 1622 aa17.94■□□□□ 0.46
VAT1L-201ENST00000302536 CLSPNQ9HAW4 1339 aa17.93■□□□□ 0.46
VAT1L-201ENST00000302536 SLC4A1APQ9BWU0 796 aaKnown RBP17.92■□□□□ 0.46
VAT1L-201ENST00000302536 ADAMTS12P58397 1594 aa17.92■□□□□ 0.46
VAT1L-201ENST00000302536 EPRSP07814 1512 aaKnown RBP17.91■□□□□ 0.46
VAT1L-201ENST00000302536 PBRM1Q86U86 1689 aa17.91■□□□□ 0.46
VAT1L-201ENST00000302536 EIF4G3O43432 1585 aaKnown RBP17.9■□□□□ 0.46
VAT1L-201ENST00000302536 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.9■□□□□ 0.46
VAT1L-201ENST00000302536 KIAA0586Q9BVV6 1533 aa17.89■□□□□ 0.45
VAT1L-201ENST00000302536 CCDC18Q5T9S5 1454 aa17.89■□□□□ 0.45
VAT1L-201ENST00000302536 WDR62O43379 1518 aa17.88■□□□□ 0.45
VAT1L-201ENST00000302536 HNRNPMP52272 730 aaKnown RBP eCLIP17.88■□□□□ 0.45
VAT1L-201ENST00000302536 MAGI3Q5TCQ9 1506 aa17.88■□□□□ 0.45
VAT1L-201ENST00000302536 CARMIL2Q6F5E8 1435 aa17.87■□□□□ 0.45
VAT1L-201ENST00000302536 THOC2Q8NI27 1593 aaKnown RBP17.87■□□□□ 0.45
VAT1L-201ENST00000302536 MAP3K1Q13233 1512 aa17.87■□□□□ 0.45
VAT1L-201ENST00000302536 RTN4Q9NQC3 1192 aaKnown RBP17.86■□□□□ 0.45
VAT1L-201ENST00000302536 MPHOSPH9Q99550 1183 aa17.85■□□□□ 0.45
VAT1L-201ENST00000302536 PPP1R15AO75807 674 aaPredicted RBP17.84■□□□□ 0.45
VAT1L-201ENST00000302536 RTL5Q5HYW3 569 aaPredicted RBP17.83■□□□□ 0.44
VAT1L-201ENST00000302536 SYNJ2O15056 1496 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms