RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 CDK11AQ9UQ88 783 aaPredicted RBP18.96■□□□□ 0.63
SKA3-201ENST00000298260 FANCIQ9NVI1 1328 aa18.96■□□□□ 0.63
SKA3-201ENST00000298260 WDR97A6NE52 1622 aa18.94■□□□□ 0.62
SKA3-201ENST00000298260 SYNJ1O43426 1573 aa18.94■□□□□ 0.62
SKA3-201ENST00000298260 ANP32CO43423 234 aa18.92■□□□□ 0.62
SKA3-201ENST00000298260 RAB3GAP2Q9H2M9 1393 aa18.91■□□□□ 0.62
SKA3-201ENST00000298260 HNRNPUQ00839 825 aaKnown RBP eCLIP18.89■□□□□ 0.61
SKA3-201ENST00000298260 MAPKBP1O60336 1514 aa18.88■□□□□ 0.61
SKA3-201ENST00000298260 CADPSQ9ULU8 1353 aa18.86■□□□□ 0.61
SKA3-201ENST00000298260 CCNB3Q8WWL7 1395 aa18.85■□□□□ 0.61
SKA3-201ENST00000298260 CFTRP13569 1480 aa18.85■□□□□ 0.61
SKA3-201ENST00000298260 PAK3O75914 559 aaPredicted RBP18.84■□□□□ 0.61
SKA3-201ENST00000298260 ARAP1Q96P48 1450 aa18.83■□□□□ 0.61
SKA3-201ENST00000298260 RRBP1Q9P2E9 1410 aaKnown RBP18.82■□□□□ 0.6
SKA3-201ENST00000298260 B4GALNT3Q6L9W6 998 aa18.82■□□□□ 0.6
SKA3-201ENST00000298260 CCER2I3L3R5 266 aa18.81■□□□□ 0.6
SKA3-201ENST00000298260 SALL2Q9Y467 1007 aaPredicted RBP18.81■□□□□ 0.6
SKA3-201ENST00000298260 CCDC136Q96JN2 1154 aa18.81■□□□□ 0.6
SKA3-201ENST00000298260 RTN4Q9NQC3 1192 aaKnown RBP18.77■□□□□ 0.6
SKA3-201ENST00000298260 FAM50AQ14320 339 aaKnown RBP18.74■□□□□ 0.59
SKA3-201ENST00000298260 CUX2O14529 1486 aa18.74■□□□□ 0.59
SKA3-201ENST00000298260 CUX1P39880 1505 aa18.73■□□□□ 0.59
SKA3-201ENST00000298260 IL27Q8NEV9 243 aa18.71■□□□□ 0.59
SKA3-201ENST00000298260 NOP58Q9Y2X3 529 aaKnown RBP18.7■□□□□ 0.58
SKA3-201ENST00000298260 FANCD2Q9BXW9 1451 aa18.7■□□□□ 0.58
SKA3-201ENST00000298260 CCDC184Q52MB2 194 aa18.7■□□□□ 0.58
SKA3-201ENST00000298260 PPP4R2Q9NY27 417 aa18.67■□□□□ 0.58
SKA3-201ENST00000298260 SETD5Q9C0A6 1442 aa18.66■□□□□ 0.58
SKA3-201ENST00000298260 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.66■□□□□ 0.58
SKA3-201ENST00000298260 SENP3-EIF4A1A0A087X0R7 540 aa18.65■□□□□ 0.58
SKA3-201ENST00000298260 TOP2BQ02880 1626 aa18.62■□□□□ 0.57
SKA3-201ENST00000298260 MYT1LQ9UL68 1186 aa18.62■□□□□ 0.57
SKA3-201ENST00000298260 FAM9BQ8IZU0 186 aa18.61■□□□□ 0.57
SKA3-201ENST00000298260 ATP1B4Q9UN42 357 aaPredicted RBP18.59■□□□□ 0.57
SKA3-201ENST00000298260 CNGB1Q14028 1251 aaPredicted RBP18.57■□□□□ 0.56
SKA3-201ENST00000298260 RAD54L2Q9Y4B4 1467 aa18.57■□□□□ 0.56
SKA3-201ENST00000298260 PHLDB1Q86UU1 1377 aa18.56■□□□□ 0.56
SKA3-201ENST00000298260 FGD5Q6ZNL6 1462 aa18.55■□□□□ 0.56
SKA3-201ENST00000298260 PRXQ9BXM0 1461 aa18.54■□□□□ 0.56
SKA3-201ENST00000298260 ARHGAP35Q9NRY4 1499 aa18.54■□□□□ 0.56
SKA3-201ENST00000298260 TONSLQ96HA7 1378 aa18.52■□□□□ 0.56
SKA3-201ENST00000298260 P3H3Q8IVL6 736 aa18.52■□□□□ 0.56
SKA3-201ENST00000298260 BIVM-ERCC5R4GMW8 1640 aa18.52■□□□□ 0.55
SKA3-201ENST00000298260 RTL5Q5HYW3 569 aaPredicted RBP18.51■□□□□ 0.55
SKA3-201ENST00000298260 KIF21AQ7Z4S6 1674 aa18.5■□□□□ 0.55
SKA3-201ENST00000298260 PRDM2Q13029 1718 aa18.49■□□□□ 0.55
SKA3-201ENST00000298260 URB2Q14146 1524 aaKnown RBP18.48■□□□□ 0.55
SKA3-201ENST00000298260 WASHC2AQ641Q2 1341 aa18.48■□□□□ 0.55
SKA3-201ENST00000298260 LAMC3Q9Y6N6 1575 aa18.47■□□□□ 0.55
SKA3-201ENST00000298260 TOPBP1Q92547 1522 aa18.47■□□□□ 0.55
SKA3-201ENST00000298260 PDS5BQ9NTI5 1447 aa18.47■□□□□ 0.55
SKA3-201ENST00000298260 NPM2Q86SE8 214 aaKnown RBP18.46■□□□□ 0.55
SKA3-201ENST00000298260 TDRD9Q8NDG6 1382 aaKnown RBP18.45■□□□□ 0.54
SKA3-201ENST00000298260 LAS1LQ9Y4W2 734 aaKnown RBP18.45■□□□□ 0.54
SKA3-201ENST00000298260 IPO9Q96P70 1041 aaKnown RBP18.45■□□□□ 0.54
SKA3-201ENST00000298260 ZBTB47Q9UFB7 747 aaPredicted RBP18.45■□□□□ 0.54
SKA3-201ENST00000298260 ERICH3Q5RHP9 1530 aa18.44■□□□□ 0.54
SKA3-201ENST00000298260 ANP32AP39687 249 aaKnown RBP18.44■□□□□ 0.54
SKA3-201ENST00000298260 MRS2Q9HD23 443 aa18.43■□□□□ 0.54
SKA3-201ENST00000298260 POLA1P09884 1462 aaPredicted RBP18.43■□□□□ 0.54
SKA3-201ENST00000298260 TIMELESSQ9UNS1 1208 aa18.43■□□□□ 0.54
SKA3-201ENST00000298260 HSPA5P11021 654 aaKnown RBP18.42■□□□□ 0.54
SKA3-201ENST00000298260 KIF27Q86VH2 1401 aa18.42■□□□□ 0.54
SKA3-201ENST00000298260 AKNAQ7Z591 1439 aa18.41■□□□□ 0.54
SKA3-201ENST00000298260 ERICH6BQ5W0A0 696 aa18.41■□□□□ 0.54
SKA3-201ENST00000298260 C11orf95C9JLR9 678 aaPredicted RBP18.39■□□□□ 0.53
SKA3-201ENST00000298260 ERCC6Q03468 1493 aa18.39■□□□□ 0.53
SKA3-201ENST00000298260 TIAM1Q13009 1591 aa18.37■□□□□ 0.53
SKA3-201ENST00000298260 LRRC9Q6ZRR7 1453 aa18.37■□□□□ 0.53
SKA3-201ENST00000298260 DNMBPQ6XZF7 1577 aa18.36■□□□□ 0.53
SKA3-201ENST00000298260 IGF1RP08069 1367 aa18.34■□□□□ 0.53
SKA3-201ENST00000298260 PRKRIP1Q9H875 184 aaPredicted RBP18.34■□□□□ 0.53
SKA3-201ENST00000298260 NEFMP07197 916 aa18.33■□□□□ 0.52
SKA3-201ENST00000298260 ZBED9Q6R2W3 1325 aa18.31■□□□□ 0.52
SKA3-201ENST00000298260 BRPF3Q9ULD4 1205 aa18.31■□□□□ 0.52
SKA3-201ENST00000298260 EIF5BO60841 1220 aaKnown RBP18.29■□□□□ 0.52
SKA3-201ENST00000298260 AQRO60306 1485 aaKnown RBP eCLIP18.27■□□□□ 0.523e-7■■■■■ 51.3
SKA3-201ENST00000298260 CARMIL1Q5VZK9 1371 aa18.27■□□□□ 0.52
SKA3-201ENST00000298260 CCDC18Q5T9S5 1454 aa18.25■□□□□ 0.51
SKA3-201ENST00000298260 FHAD1B1AJZ9 1412 aa18.24■□□□□ 0.51
SKA3-201ENST00000298260 EIF4G2P78344 907 aaKnown RBP eCLIP18.24■□□□□ 0.51
SKA3-201ENST00000298260 FOXD1Q16676 465 aa18.24■□□□□ 0.51
SKA3-201ENST00000298260 SKAP1Q86WV1 359 aa18.23■□□□□ 0.51
SKA3-201ENST00000298260 POLR3GLQ9BT43 218 aa18.23■□□□□ 0.51
SKA3-201ENST00000298260 PTPRKQ15262 1439 aa18.23■□□□□ 0.51
SKA3-201ENST00000298260 CNTLNQ9NXG0 1405 aa18.23■□□□□ 0.51
SKA3-201ENST00000298260 MRC2Q9UBG0 1479 aa18.22■□□□□ 0.51
SKA3-201ENST00000298260 KDM5BQ9UGL1 1544 aa18.22■□□□□ 0.51
SKA3-201ENST00000298260 ZNF608Q9ULD9 1512 aaPredicted RBP18.21■□□□□ 0.51
SKA3-201ENST00000298260 CHIC2Q9UKJ5 165 aa18.2■□□□□ 0.5
SKA3-201ENST00000298260 RRP7BPQ9NSQ0 103 aa18.19■□□□□ 0.5
SKA3-201ENST00000298260 ABCA10Q8WWZ4 1543 aa18.19■□□□□ 0.5
SKA3-201ENST00000298260 FBLN2P98095 1184 aa18.18■□□□□ 0.5
SKA3-201ENST00000298260 UBE2Q2Q8WVN8 375 aa18.17■□□□□ 0.5
SKA3-201ENST00000298260 NUDCQ9Y266 331 aa18.16■□□□□ 0.5
SKA3-201ENST00000298260 SLC4A3P48751 1232 aa18.16■□□□□ 0.5
SKA3-201ENST00000298260 GAPVD1Q14C86 1478 aa18.16■□□□□ 0.5
SKA3-201ENST00000298260 FHOD3Q2V2M9 1422 aa18.16■□□□□ 0.5
SKA3-201ENST00000298260 UACAQ9BZF9 1416 aa18.16■□□□□ 0.5
SKA3-201ENST00000298260 CCDC7Q96M83 1385 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 120.4 ms