RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 NEFLP07196 543 aa17.6■□□□□ 0.41
CHMP3-201ENST00000263856 PHLDB1Q86UU1 1377 aa17.59■□□□□ 0.41
CHMP3-201ENST00000263856 CARMIL1Q5VZK9 1371 aa17.58■□□□□ 0.4
CHMP3-201ENST00000263856 IGF1RP08069 1367 aa17.56■□□□□ 0.4
CHMP3-201ENST00000263856 WDR97A6NE52 1622 aa17.56■□□□□ 0.4
CHMP3-201ENST00000263856 MAPKBP1O60336 1514 aa17.56■□□□□ 0.4
CHMP3-201ENST00000263856 ANP32CO43423 234 aa17.55■□□□□ 0.4
CHMP3-201ENST00000263856 NCAPD3P42695 1498 aa17.52■□□□□ 0.4
CHMP3-201ENST00000263856 TIAM1Q13009 1591 aa17.52■□□□□ 0.4
CHMP3-201ENST00000263856 CFTRP13569 1480 aa17.51■□□□□ 0.39
CHMP3-201ENST00000263856 FHOD3Q2V2M9 1422 aa17.51■□□□□ 0.39
CHMP3-201ENST00000263856 LRRC9Q6ZRR7 1453 aa17.5■□□□□ 0.39
CHMP3-201ENST00000263856 IRX6P78412 446 aaPredicted RBP17.47■□□□□ 0.39
CHMP3-201ENST00000263856 TONSLQ96HA7 1378 aa17.47■□□□□ 0.39
CHMP3-201ENST00000263856 FGD5Q6ZNL6 1462 aa17.47■□□□□ 0.39
CHMP3-201ENST00000263856 HMGXB3Q12766 1538 aa17.47■□□□□ 0.39
CHMP3-201ENST00000263856 ANP32EQ9BTT0 268 aa17.44■□□□□ 0.38
CHMP3-201ENST00000263856 PPP1R15AO75807 674 aaPredicted RBP17.44■□□□□ 0.38
CHMP3-201ENST00000263856 FHAD1B1AJZ9 1412 aa17.42■□□□□ 0.38
CHMP3-201ENST00000263856 ARID3CA6NKF2 412 aa17.41■□□□□ 0.38
CHMP3-201ENST00000263856 PCF11O94913 1555 aaKnown RBP17.41■□□□□ 0.38
CHMP3-201ENST00000263856 CNGB1Q14028 1251 aaPredicted RBP17.4■□□□□ 0.38
CHMP3-201ENST00000263856 CHIC2Q9UKJ5 165 aa17.4■□□□□ 0.38
CHMP3-201ENST00000263856 HNRNPUQ00839 825 aaKnown RBP eCLIP17.39■□□□□ 0.37
CHMP3-201ENST00000263856 CADPSQ9ULU8 1353 aa17.38■□□□□ 0.37
CHMP3-201ENST00000263856 MTUS2Q5JR59 1369 aa17.38■□□□□ 0.37
CHMP3-201ENST00000263856 RAD54L2Q9Y4B4 1467 aa17.37■□□□□ 0.37
CHMP3-201ENST00000263856 RRP7BPQ9NSQ0 103 aa17.35■□□□□ 0.37
CHMP3-201ENST00000263856 RBM19Q9Y4C8 960 aaKnown RBP17.35■□□□□ 0.37
CHMP3-201ENST00000263856 CCER2I3L3R5 266 aa17.3■□□□□ 0.36
CHMP3-201ENST00000263856 CCDC18Q5T9S5 1454 aa17.29■□□□□ 0.36
CHMP3-201ENST00000263856 MAP3K1Q13233 1512 aa17.28■□□□□ 0.36
CHMP3-201ENST00000263856 TIMELESSQ9UNS1 1208 aa17.28■□□□□ 0.36
CHMP3-201ENST00000263856 FANCD2Q9BXW9 1451 aa17.27■□□□□ 0.35
CHMP3-201ENST00000263856 FGD6Q6ZV73 1430 aa17.26■□□□□ 0.35
CHMP3-201ENST00000263856 FOXD1Q16676 465 aa17.25■□□□□ 0.35
CHMP3-201ENST00000263856 CFAP43Q8NDM7 1665 aa17.24■□□□□ 0.35
CHMP3-201ENST00000263856 FAM9BQ8IZU0 186 aa17.24■□□□□ 0.35
CHMP3-201ENST00000263856 POLR3GLQ9BT43 218 aa17.24■□□□□ 0.35
CHMP3-201ENST00000263856 TDRD9Q8NDG6 1382 aaKnown RBP17.23■□□□□ 0.35
CHMP3-201ENST00000263856 PTPRKQ15262 1439 aa17.22■□□□□ 0.35
CHMP3-201ENST00000263856 SENP3-EIF4A1A0A087X0R7 540 aa17.22■□□□□ 0.35
CHMP3-201ENST00000263856 HSPA5P11021 654 aaKnown RBP17.22■□□□□ 0.35
CHMP3-201ENST00000263856 ERICH6Q7L0X2 663 aa17.22■□□□□ 0.35
CHMP3-201ENST00000263856 FYCO1Q9BQS8 1478 aa17.21■□□□□ 0.35
CHMP3-201ENST00000263856 CASKIN1Q8WXD9 1431 aa17.21■□□□□ 0.35
CHMP3-201ENST00000263856 NESP48681 1621 aa17.21■□□□□ 0.35
CHMP3-201ENST00000263856 PRDM2Q13029 1718 aa17.19■□□□□ 0.34
CHMP3-201ENST00000263856 CDK11AQ9UQ88 783 aaPredicted RBP17.18■□□□□ 0.34
CHMP3-201ENST00000263856 FMN1Q68DA7 1419 aa17.18■□□□□ 0.34
CHMP3-201ENST00000263856 POLA1P09884 1462 aaPredicted RBP17.17■□□□□ 0.34
CHMP3-201ENST00000263856 UACAQ9BZF9 1416 aa17.16■□□□□ 0.34
CHMP3-201ENST00000263856 CCDC184Q52MB2 194 aa17.16■□□□□ 0.34
CHMP3-201ENST00000263856 AQRO60306 1485 aaKnown RBP eCLIP17.15■□□□□ 0.344e-6■■□□□ 13.9
CHMP3-201ENST00000263856 WASHC2AQ641Q2 1341 aa17.15■□□□□ 0.34
CHMP3-201ENST00000263856 EIF4G2P78344 907 aaKnown RBP eCLIP17.14■□□□□ 0.33
CHMP3-201ENST00000263856 NCOA2Q15596 1464 aa17.14■□□□□ 0.33
CHMP3-201ENST00000263856 ZNF326Q5BKZ1 582 aaKnown RBP17.13■□□□□ 0.33
CHMP3-201ENST00000263856 NAIPQ13075 1403 aa17.12■□□□□ 0.33
CHMP3-201ENST00000263856 MRS2Q9HD23 443 aa17.12■□□□□ 0.33
CHMP3-201ENST00000263856 TOPBP1Q92547 1522 aa17.12■□□□□ 0.33
CHMP3-201ENST00000263856 HFM1A2PYH4 1435 aa17.12■□□□□ 0.33
CHMP3-201ENST00000263856 PTPN23Q9H3S7 1636 aa17.11■□□□□ 0.33
CHMP3-201ENST00000263856 EFCAB5A4FU69 1503 aa17.11■□□□□ 0.33
CHMP3-201ENST00000263856 CC2D2AQ9P2K1 1620 aa17.1■□□□□ 0.33
CHMP3-201ENST00000263856 BCL11AQ9H165 835 aa17.1■□□□□ 0.33
CHMP3-201ENST00000263856 MYOM3Q5VTT5 1437 aa17.1■□□□□ 0.33
CHMP3-201ENST00000263856 MSH5O43196 834 aa17.1■□□□□ 0.33
CHMP3-201ENST00000263856 B4GALNT3Q6L9W6 998 aa17.1■□□□□ 0.33
CHMP3-201ENST00000263856 L3MBTL2Q969R5 705 aa17.09■□□□□ 0.33
CHMP3-201ENST00000263856 ABCA10Q8WWZ4 1543 aa17.08■□□□□ 0.33
CHMP3-201ENST00000263856 DNMBPQ6XZF7 1577 aa17.07■□□□□ 0.32
CHMP3-201ENST00000263856 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.07■□□□□ 0.32
CHMP3-201ENST00000263856 CTTNBP2Q8WZ74 1663 aa17.06■□□□□ 0.32
CHMP3-201ENST00000263856 MPHOSPH9Q99550 1183 aa17.06■□□□□ 0.32
CHMP3-201ENST00000263856 SNAPC4Q5SXM2 1469 aa17.06■□□□□ 0.32
CHMP3-201ENST00000263856 C11orf95C9JLR9 678 aaPredicted RBP17.05■□□□□ 0.32
CHMP3-201ENST00000263856 CUL7Q14999 1698 aa17■□□□□ 0.31
CHMP3-201ENST00000263856 SLC4A1APQ9BWU0 796 aaKnown RBP17■□□□□ 0.31
CHMP3-201ENST00000263856 SUPT6HQ7KZ85 1726 aaKnown RBP17■□□□□ 0.31
CHMP3-201ENST00000263856 PRKRIP1Q9H875 184 aaPredicted RBP16.99■□□□□ 0.31
CHMP3-201ENST00000263856 GAPVD1Q14C86 1478 aa16.99■□□□□ 0.31
CHMP3-201ENST00000263856 LRRIQ1Q96JM4 1722 aa16.98■□□□□ 0.31
CHMP3-201ENST00000263856 PPP4R2Q9NY27 417 aa16.98■□□□□ 0.31
CHMP3-201ENST00000263856 ZNF777Q9ULD5 760 aaPredicted RBP16.98■□□□□ 0.31
CHMP3-201ENST00000263856 NBPF8Q3BBV2 869 aa16.97■□□□□ 0.31
CHMP3-201ENST00000263856 DNAJC5BQ9UF47 199 aa16.97■□□□□ 0.31
CHMP3-201ENST00000263856 ZNF644Q9H582 1327 aaPredicted RBP16.96■□□□□ 0.31
CHMP3-201ENST00000263856 CNTLNQ9NXG0 1405 aa16.96■□□□□ 0.31
CHMP3-201ENST00000263856 URB2Q14146 1524 aaKnown RBP16.95■□□□□ 0.3
CHMP3-201ENST00000263856 GRIN2BQ13224 1484 aa16.95■□□□□ 0.3
CHMP3-201ENST00000263856 EHBP1L1Q8N3D4 1523 aa16.95■□□□□ 0.3
CHMP3-201ENST00000263856 KDM6BO15054 1643 aa16.95■□□□□ 0.3
CHMP3-201ENST00000263856 MAGI3Q5TCQ9 1506 aa16.94■□□□□ 0.3
CHMP3-201ENST00000263856 CDK13Q14004 1512 aaKnown RBP16.94■□□□□ 0.3
CHMP3-201ENST00000263856 CCDC7Q96M83 1385 aa16.94■□□□□ 0.3
CHMP3-201ENST00000263856 KDM5BQ9UGL1 1544 aa16.92■□□□□ 0.3
CHMP3-201ENST00000263856 KIF7Q2M1P5 1343 aa16.91■□□□□ 0.3
CHMP3-201ENST00000263856 NBR1Q14596 966 aa16.9■□□□□ 0.3
CHMP3-201ENST00000263856 UGGT2Q9NYU1 1516 aa16.89■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms